HEADER TRANSCRIPTION 15-FEB-23 8CKC TITLE VITAMIN D RECEPTOR COMPLEX WITH 25-AMINE DERIVATIVE OF 1,25D3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 11 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 12 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, AGONIST, NUCLEAR RECEPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 19-JUN-24 8CKC 1 REMARK REVDAT 1 26-APR-23 8CKC 0 JRNL AUTH U.GOMEZ-BOUZO,A.Y.BELORUSOVA,M.L.RIVADULLA,H.SANTALLA, JRNL AUTH 2 L.VERLINDEN,A.VERSTUYF,M.J.FERRONATO,A.C.CURINO, JRNL AUTH 3 M.M.FACCHINETTI,Y.FALL,G.GOMEZ,N.ROCHEL JRNL TITL STRUCTURAL ANALYSIS AND BIOLOGICAL ACTIVITIES OF C25-AMINO JRNL TITL 2 AND C25-NITRO VITAMIN D ANALOGS. JRNL REF BIOORG.CHEM. V. 136 06528 2023 JRNL REFN ISSN 0045-2068 JRNL PMID 37054528 JRNL DOI 10.1016/J.BIOORG.2023.106528 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 17620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7500 - 4.9300 1.00 1633 181 0.1915 0.2214 REMARK 3 2 4.9300 - 3.9200 1.00 1494 167 0.1415 0.1766 REMARK 3 3 3.9200 - 3.4200 1.00 1453 162 0.1545 0.2043 REMARK 3 4 3.4200 - 3.1100 1.00 1439 160 0.1885 0.2802 REMARK 3 5 3.1100 - 2.8900 1.00 1434 158 0.2082 0.2465 REMARK 3 6 2.8900 - 2.7200 1.00 1415 158 0.1969 0.2837 REMARK 3 7 2.7200 - 2.5800 0.99 1412 158 0.2134 0.2492 REMARK 3 8 2.5800 - 2.4700 0.99 1402 157 0.2263 0.3518 REMARK 3 9 2.4700 - 2.3700 0.92 1287 142 0.2433 0.2975 REMARK 3 10 2.3700 - 2.2900 0.73 1024 114 0.2549 0.2801 REMARK 3 11 2.2900 - 2.2200 0.56 788 88 0.2707 0.3054 REMARK 3 12 2.2200 - 2.1600 0.44 613 69 0.2569 0.3121 REMARK 3 13 2.1600 - 2.1000 0.33 461 51 0.2503 0.2998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2075 REMARK 3 ANGLE : 1.055 2804 REMARK 3 CHIRALITY : 0.054 319 REMARK 3 PLANARITY : 0.006 352 REMARK 3 DIHEDRAL : 19.061 791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5693 33.7484 -0.1519 REMARK 3 T TENSOR REMARK 3 T11: 0.4277 T22: 0.6750 REMARK 3 T33: 0.4000 T12: 0.0313 REMARK 3 T13: 0.0250 T23: -0.1794 REMARK 3 L TENSOR REMARK 3 L11: 3.9269 L22: 8.4628 REMARK 3 L33: 7.0678 L12: -0.6906 REMARK 3 L13: -1.2145 L23: 6.1865 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.3367 S13: 0.6398 REMARK 3 S21: 0.3098 S22: -0.7160 S23: 0.7871 REMARK 3 S31: 0.0979 S32: -0.9044 S33: 0.5518 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2665 27.6004 -7.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.4835 REMARK 3 T33: 0.2226 T12: -0.0757 REMARK 3 T13: 0.0384 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 2.4013 L22: 5.9178 REMARK 3 L33: 6.1539 L12: 0.1994 REMARK 3 L13: -1.1680 L23: 2.2568 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: -0.1155 S13: 0.1219 REMARK 3 S21: 0.2098 S22: -0.1439 S23: 0.1367 REMARK 3 S31: -0.0522 S32: -0.0615 S33: 0.0032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7445 23.7449 4.1181 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.7438 REMARK 3 T33: 0.2381 T12: -0.1310 REMARK 3 T13: -0.0072 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.9852 L22: 3.2104 REMARK 3 L33: 5.0107 L12: -1.3854 REMARK 3 L13: -1.9815 L23: 1.6575 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.8236 S13: -0.0675 REMARK 3 S21: 0.6134 S22: -0.0088 S23: -0.0329 REMARK 3 S31: 0.4346 S32: 0.1147 S33: 0.0757 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2571 22.0300 -16.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.3832 T22: 0.5837 REMARK 3 T33: 0.2779 T12: -0.0333 REMARK 3 T13: 0.0041 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 5.4983 L22: 7.9251 REMARK 3 L33: 7.0802 L12: -2.0443 REMARK 3 L13: -0.7039 L23: 7.2309 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.1056 S13: -0.0101 REMARK 3 S21: 0.4226 S22: 0.4802 S23: -0.8998 REMARK 3 S31: 0.0268 S32: 0.8225 S33: -0.2804 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4754 37.2977 -15.8790 REMARK 3 T TENSOR REMARK 3 T11: 0.4916 T22: 0.5782 REMARK 3 T33: 0.3002 T12: -0.0717 REMARK 3 T13: 0.1087 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.3604 L22: 2.3927 REMARK 3 L33: 5.8469 L12: -0.8634 REMARK 3 L13: 2.1502 L23: 1.9130 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: 0.5526 S13: 1.0183 REMARK 3 S21: -0.6811 S22: -0.1228 S23: -0.5623 REMARK 3 S31: -1.0483 S32: 1.4275 S33: -0.0678 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20698 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS PH 6.5, 1.6 M LITHIUM REMARK 280 SULFATE AND 50 MM MAGNESIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.40667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.70333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.55500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.85167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 219.25833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.40667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.70333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.85167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.55500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 219.25833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -32.86800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 56.92905 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.85167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 ARG A 251 REMARK 465 SER A 453 REMARK 465 GLU B 696 REMARK 465 GLY B 697 REMARK 465 SER B 698 REMARK 465 PRO B 699 REMARK 465 SER B 700 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 695 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 268 O ACT A 501 2.06 REMARK 500 O HOH A 602 O HOH A 685 2.10 REMARK 500 N HIS A 399 O HOH A 601 2.11 REMARK 500 O HOH A 688 O HOH A 693 2.11 REMARK 500 O TYR A 175 O HOH A 602 2.15 REMARK 500 N GLN A 398 O HOH A 601 2.15 REMARK 500 O HOH A 614 O HOH A 665 2.16 REMARK 500 NH2 ARG A 396 O HOH A 603 2.17 REMARK 500 N UYU A 502 O HOH A 604 2.17 REMARK 500 O ALA A 331 O HOH A 605 2.18 REMARK 500 O VAL A 452 O HOH A 606 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 622 O HOH A 655 8565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 316 65.67 -107.16 REMARK 500 LEU A 367 30.55 -90.90 REMARK 500 GLN A 375 -63.82 -94.00 REMARK 500 GLN A 375 -63.82 -92.17 REMARK 500 ARG B 692 -176.58 -56.77 REMARK 500 LEU B 693 -59.67 65.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CKC A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8CKC B 686 700 UNP Q15788 NCOA1_HUMAN 686 700 SEQADV 8CKC GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8CKC SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8CKC HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8CKC MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 15 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 2 B 15 PRO SER HET ACT A 501 4 HET UYU A 502 30 HETNAM ACT ACETATE ION HETNAM UYU (1R,3S,5Z)-5-[(2E)-2-[(1R,3AS,7AR)-1-[(2R)-6-AZANYL-6- HETNAM 2 UYU METHYL-HEPTAN-2-YL]-7A-METHYL-2,3,3A,5,6,7-HEXAHYDRO- HETNAM 3 UYU 1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE- HETNAM 4 UYU CYCLOHEXANE-1,3-DIOL FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 UYU C27 H45 N O2 FORMUL 5 HOH *100(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 MET A 275 1 22 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 GLY A 318 ASP A 320 5 3 HELIX 6 AA6 CYS A 324 LYS A 330 1 7 HELIX 7 AA7 THR A 334 LEU A 351 1 18 HELIX 8 AA8 HIS A 354 LEU A 367 1 14 HELIX 9 AA9 ASP A 376 HIS A 399 1 24 HELIX 10 AB1 LEU A 404 PHE A 432 1 29 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 GLY A 449 1 9 HELIX 13 AB4 HIS B 687 ARG B 692 1 6 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 65.736 65.736 263.110 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015212 0.008783 0.000000 0.00000 SCALE2 0.000000 0.017566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003801 0.00000