HEADER MEMBRANE PROTEIN 16-FEB-23 8CL8 TITLE KROKINOBACTER EIKASTUS RHODOPSIN 2 (KR2) EXTRAPOLATED MAP 1US AFTER TITLE 2 LIGHT ACTIVATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM PUMPING RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DOKDONIA EIKASTA; SOURCE 3 ORGANISM_TAXID: 308116; SOURCE 4 GENE: NAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS KR2, LIGHT DRIVEN SODIUM PUMP, SODIUM PUMP, PHOTOACTIVATION, KEYWDS 2 PHOTOCYCLE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.BERTRAND,M.W.KEPA,T.WEINERT,M.WRANIK,J.STANDFUSS REVDAT 1 13-DEC-23 8CL8 0 JRNL AUTH M.WRANIK,M.W.KEPA,E.V.BEALE,D.JAMES,Q.BERTRAND,T.WEINERT, JRNL AUTH 2 A.FURRER,H.GLOVER,D.GASHI,M.CARRILLO,Y.KONDO,R.T.STIPP, JRNL AUTH 3 G.KHUSAINOV,K.NASS,D.OZEROV,C.CIRELLI,P.J.M.JOHNSON, JRNL AUTH 4 F.DWORKOWSKI,J.H.BEALE,S.STUBBS,T.ZAMOFING,M.SCHNEIDER, JRNL AUTH 5 K.KRAUSKOPF,L.GAO,O.THORN-SESHOLD,C.BOSTEDT,C.BACELLAR, JRNL AUTH 6 M.O.STEINMETZ,C.MILNE,J.STANDFUSS JRNL TITL A MULTI-RESERVOIR EXTRUDER FOR TIME-RESOLVED SERIAL PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY AND COMPOUND SCREENING AT X-RAY JRNL TITL 3 FREE-ELECTRON LASERS. JRNL REF NAT COMMUN V. 14 7956 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38042952 JRNL DOI 10.1038/S41467-023-43523-5 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 15718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.328 REMARK 3 R VALUE (WORKING SET) : 0.327 REMARK 3 FREE R VALUE : 0.358 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8300 - 4.3300 0.94 2635 136 0.3096 0.3180 REMARK 3 2 4.3300 - 3.4500 0.95 2513 131 0.2871 0.2995 REMARK 3 3 3.4500 - 3.0200 0.95 2483 133 0.3182 0.3607 REMARK 3 4 3.0200 - 2.7500 0.94 2465 127 0.3503 0.3971 REMARK 3 5 2.7500 - 2.5500 0.93 2427 128 0.3861 0.4951 REMARK 3 6 2.5500 - 2.4000 0.92 2415 125 0.4137 0.4422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2367 REMARK 3 ANGLE : 0.925 3134 REMARK 3 CHIRALITY : 0.057 335 REMARK 3 PLANARITY : 0.022 372 REMARK 3 DIHEDRAL : 15.944 879 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4154 116.9607 258.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.4001 T22: 0.2980 REMARK 3 T33: 0.1735 T12: -0.0641 REMARK 3 T13: -0.0191 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.1586 L22: 1.3241 REMARK 3 L33: 1.6285 L12: -0.2084 REMARK 3 L13: -0.2234 L23: 0.2698 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.4211 S13: 0.1125 REMARK 3 S21: -0.3804 S22: -0.0908 S23: 0.1807 REMARK 3 S31: -0.0688 S32: -0.3083 S33: 0.0602 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2650 111.0542 267.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.2157 REMARK 3 T33: 0.2114 T12: -0.1005 REMARK 3 T13: -0.0477 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.2516 L22: 1.6043 REMARK 3 L33: 1.0184 L12: -0.4932 REMARK 3 L13: 0.6820 L23: 0.4005 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.4260 S13: -0.0048 REMARK 3 S21: -0.5651 S22: -0.0376 S23: 0.0720 REMARK 3 S31: -0.2953 S32: 0.3205 S33: 0.0195 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7270 101.0724 270.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.1106 REMARK 3 T33: 0.2122 T12: -0.0027 REMARK 3 T13: -0.0045 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.2724 L22: 1.4535 REMARK 3 L33: 2.3695 L12: 0.0072 REMARK 3 L13: -0.0078 L23: -0.2169 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.3078 S13: -0.1563 REMARK 3 S21: -0.4245 S22: -0.0609 S23: 0.0609 REMARK 3 S31: 0.6475 S32: 0.1127 S33: 0.0238 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4323 108.0665 265.2342 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.2264 REMARK 3 T33: 0.1619 T12: -0.0494 REMARK 3 T13: -0.0073 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.4646 L22: 2.2143 REMARK 3 L33: 1.7740 L12: -0.0268 REMARK 3 L13: 0.4296 L23: 0.2997 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: 0.3377 S13: -0.2235 REMARK 3 S21: -0.5493 S22: 0.0392 S23: 0.2216 REMARK 3 S31: -0.0687 S32: -0.3142 S33: 0.1641 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 293.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : ESA REMARK 200 X-RAY GENERATOR MODEL : SWISSFEL ARAMIS BEAMLINE ESA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.028919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 15.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 60.4 REMARK 200 DATA REDUNDANCY : 400.1 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20_4459 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE PH 4.4 150 MM REMARK 280 MAGNESIUM CHLORIDE 34 % PEG 200, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.47500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.44500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.44500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 VAL A 230 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 255 C14 RET A 326 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR A 17 H131 LFA A 325 3857 1.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -80.04 -109.48 REMARK 500 LEU A 103 161.78 77.58 REMARK 500 THR A 131 -86.63 -112.12 REMARK 500 TYR A 226 46.14 -83.39 REMARK 500 ASP A 231 54.05 -145.87 REMARK 500 SER A 236 -165.87 -163.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 94 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 456 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 457 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 458 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 10.64 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 12.38 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 301 REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA A 314 REMARK 610 LFA A 315 REMARK 610 LFA A 316 REMARK 610 LFA A 317 REMARK 610 LFA A 318 REMARK 610 LFA A 319 REMARK 610 LFA A 320 REMARK 610 LFA A 321 REMARK 610 LFA A 322 REMARK 610 LFA A 323 REMARK 610 LFA A 324 REMARK 610 LFA A 325 DBREF 8CL8 A 8 271 UNP N0DKS8 N0DKS8_9FLAO 8 271 SEQRES 1 A 264 ALA ASN PHE GLU ASN PHE ILE GLY ALA THR GLU GLY PHE SEQRES 2 A 264 SER GLU ILE ALA TYR GLN PHE THR SER HIS ILE LEU THR SEQRES 3 A 264 LEU GLY TYR ALA VAL MET LEU ALA GLY LEU LEU TYR PHE SEQRES 4 A 264 ILE LEU THR ILE LYS ASN VAL ASP LYS LYS PHE GLN MET SEQRES 5 A 264 SER ASN ILE LEU SER ALA VAL VAL MET VAL SER ALA PHE SEQRES 6 A 264 LEU LEU LEU TYR ALA GLN ALA GLN ASN TRP THR SER SER SEQRES 7 A 264 PHE THR PHE ASN GLU GLU VAL GLY ARG TYR PHE LEU ASP SEQRES 8 A 264 PRO SER GLY ASP LEU PHE ASN ASN GLY TYR ARG TYR LEU SEQRES 9 A 264 ASN TRP LEU ILE ASP VAL PRO MET LEU LEU PHE GLN ILE SEQRES 10 A 264 LEU PHE VAL VAL SER LEU THR THR SER LYS PHE SER SER SEQRES 11 A 264 VAL ARG ASN GLN PHE TRP PHE SER GLY ALA MET MET ILE SEQRES 12 A 264 ILE THR GLY TYR ILE GLY GLN PHE TYR GLU VAL SER ASN SEQRES 13 A 264 LEU THR ALA PHE LEU VAL TRP GLY ALA ILE SER SER ALA SEQRES 14 A 264 PHE PHE PHE HIS ILE LEU TRP VAL MET LYS LYS VAL ILE SEQRES 15 A 264 ASN GLU GLY LYS GLU GLY ILE SER PRO ALA GLY GLN LYS SEQRES 16 A 264 ILE LEU SER ASN ILE TRP ILE LEU PHE LEU ILE SER TRP SEQRES 17 A 264 THR LEU TYR PRO GLY ALA TYR LEU MET PRO TYR LEU THR SEQRES 18 A 264 GLY VAL ASP GLY PHE LEU TYR SER GLU ASP GLY VAL MET SEQRES 19 A 264 ALA ARG GLN LEU VAL TYR THR ILE ALA ASP VAL SER SER SEQRES 20 A 264 LYS VAL ILE TYR GLY VAL LEU LEU GLY ASN LEU ALA ILE SEQRES 21 A 264 THR LEU SER LYS HET LFA A 301 16 HET LFA A 302 8 HET LFA A 303 6 HET LFA A 304 6 HET LFA A 305 13 HET LFA A 306 10 HET LFA A 307 8 HET LFA A 308 12 HET LFA A 309 11 HET LFA A 310 5 HET LFA A 311 10 HET LFA A 312 5 HET LFA A 313 10 HET LFA A 314 9 HET LFA A 315 9 HET LFA A 316 6 HET LFA A 317 5 HET LFA A 318 4 HET LFA A 319 6 HET LFA A 320 10 HET LFA A 321 3 HET LFA A 322 9 HET LFA A 323 10 HET LFA A 324 12 HET LFA A 325 40 HET RET A 326 48 HETNAM LFA EICOSANE HETNAM RET RETINAL HETSYN LFA LIPID FRAGMENT FORMUL 2 LFA 25(C20 H42) FORMUL 27 RET C20 H28 O FORMUL 28 HOH *62(H2 O) HELIX 1 AA1 ASN A 9 THR A 17 1 9 HELIX 2 AA2 SER A 21 THR A 49 1 29 HELIX 3 AA3 ILE A 50 VAL A 53 5 4 HELIX 4 AA4 ASP A 54 LYS A 56 5 3 HELIX 5 AA5 PHE A 57 SER A 84 1 28 HELIX 6 AA6 ASN A 106 ILE A 124 1 19 HELIX 7 AA7 LEU A 125 VAL A 127 5 3 HELIX 8 AA8 LYS A 134 GLN A 157 1 24 HELIX 9 AA9 PHE A 158 GLU A 160 5 3 HELIX 10 AB1 ASN A 163 GLU A 194 1 32 HELIX 11 AB2 SER A 197 MET A 224 1 28 HELIX 12 AB3 PRO A 225 THR A 228 5 4 HELIX 13 AB4 SER A 236 SER A 270 1 35 SHEET 1 AA1 2 PHE A 86 ASN A 89 0 SHEET 2 AA1 2 ARG A 94 LEU A 97 -1 O ARG A 94 N ASN A 89 LINK NZ LYS A 255 C15 RET A 326 1555 1555 1.43 CRYST1 41.460 84.890 234.950 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004256 0.00000