HEADER IMMUNE SYSTEM 19-FEB-23 8CMG TITLE HUMAN LEUKOCYTE ANTIGEN CLASS II ALLOTYPE DR1 PRESENTING SARS-COV-2 TITLE 2 NSP14 PEPTIDE (ORF1AB)6420-6434 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HUMAN LEUKOCYTE ANTIGEN DR BETA CHAIN ALLOTYPE DR1 COMPND 8 (DRB1*0101); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: NSP7, SARS-COV-2 NSP14 EPITOPE (ORF1AB)6420-6434; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 16 2; SOURCE 17 ORGANISM_TAXID: 2697049 KEYWDS HLA-II, HLA-DR, HLA-DR1, HUMAN LEUKOCYTE ANTIGEN, MAJOR KEYWDS 2 HISTOCOMPATIBILITY COMPLEX, MAJOR HISTOCOMPATIBILITY COMPLEX CLASS KEYWDS 3 2, SARS-COV-2, CORONAVIRUS, COVID-19, NSP14, ORF1AB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.J.MACLACHLAN,G.H.MASON,D.O.SOURFIELD,A.J.GODKIN,P.J.RIZKALLAH REVDAT 2 02-AUG-23 8CMG 1 JRNL REVDAT 1 26-JUL-23 8CMG 0 JRNL AUTH Y.CHEN,G.H.MASON,D.O.SCOURFIELD,A.GREENSHIELDS-WATSON, JRNL AUTH 2 T.A.HAIGH,A.K.SEWELL,H.M.LONG,A.M.GALLIMORE,P.RIZKALLAH, JRNL AUTH 3 B.J.MACLACHLAN,A.GODKIN JRNL TITL STRUCTURAL DEFINITION OF HLA CLASS II-PRESENTED SARS-COV-2 JRNL TITL 2 EPITOPES REVEALS A MECHANISM TO ESCAPE PRE-EXISTING CD4 + T JRNL TITL 3 CELL IMMUNITY. JRNL REF CELL REP V. 42 12827 2023 JRNL REFN ESSN 2211-1247 JRNL PMID 37471227 JRNL DOI 10.1016/J.CELREP.2023.112827 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6200 - 4.4500 1.00 3208 155 0.1720 0.1792 REMARK 3 2 4.4500 - 3.5300 1.00 2957 147 0.1656 0.1994 REMARK 3 3 3.5300 - 3.0900 1.00 2880 152 0.1859 0.2177 REMARK 3 4 3.0900 - 2.8000 1.00 2823 159 0.2051 0.2328 REMARK 3 5 2.8000 - 2.6000 1.00 2870 138 0.2117 0.2429 REMARK 3 6 2.6000 - 2.4500 1.00 2756 159 0.2103 0.2750 REMARK 3 7 2.4500 - 2.3300 1.00 2838 135 0.2029 0.2544 REMARK 3 8 2.3300 - 2.2300 0.99 2777 134 0.1892 0.2452 REMARK 3 9 2.2300 - 2.1400 1.00 2766 153 0.1952 0.2687 REMARK 3 10 2.1400 - 2.0700 1.00 2764 135 0.2103 0.2829 REMARK 3 11 2.0700 - 2.0000 1.00 2734 153 0.2193 0.2499 REMARK 3 12 2.0000 - 1.9400 1.00 2785 135 0.2153 0.2523 REMARK 3 13 1.9400 - 1.8900 1.00 2722 142 0.2155 0.2992 REMARK 3 14 1.8900 - 1.8500 1.00 2726 148 0.2273 0.2494 REMARK 3 15 1.8500 - 1.8100 0.99 2707 136 0.2462 0.2515 REMARK 3 16 1.8100 - 1.7700 0.99 2729 148 0.2891 0.3215 REMARK 3 17 1.7700 - 1.7300 0.99 2735 129 0.3173 0.3353 REMARK 3 18 1.7300 - 1.7000 0.99 2704 126 0.3622 0.3659 REMARK 3 19 1.7000 - 1.6700 1.00 2731 143 0.3983 0.4631 REMARK 3 20 1.6700 - 1.6400 0.97 2630 138 0.4414 0.4422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3285 REMARK 3 ANGLE : 1.254 4437 REMARK 3 CHIRALITY : 0.079 469 REMARK 3 PLANARITY : 0.012 572 REMARK 3 DIHEDRAL : 7.776 439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3123 -9.9092 -11.5331 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.3203 REMARK 3 T33: 0.2525 T12: 0.0605 REMARK 3 T13: -0.0317 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.1696 L22: 6.2759 REMARK 3 L33: 3.2749 L12: -1.9527 REMARK 3 L13: 1.1371 L23: -1.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0840 S13: -0.2157 REMARK 3 S21: 0.4163 S22: -0.1001 S23: -0.5483 REMARK 3 S31: 0.3335 S32: 0.3984 S33: 0.1409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5715 11.3329 -37.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.3303 REMARK 3 T33: 0.3009 T12: 0.0932 REMARK 3 T13: -0.0066 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.5077 L22: 5.1205 REMARK 3 L33: 6.1960 L12: 1.3234 REMARK 3 L13: -2.5904 L23: -0.4326 REMARK 3 S TENSOR REMARK 3 S11: -0.2838 S12: 0.6864 S13: 0.0972 REMARK 3 S21: -0.3173 S22: 0.0431 S23: 0.5293 REMARK 3 S31: -0.3986 S32: -0.8672 S33: 0.3005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8632 1.9188 -23.2937 REMARK 3 T TENSOR REMARK 3 T11: 0.2875 T22: 0.2097 REMARK 3 T33: 0.2682 T12: 0.0039 REMARK 3 T13: 0.0206 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9031 L22: 1.0059 REMARK 3 L33: 3.1276 L12: -0.5146 REMARK 3 L13: 0.9238 L23: -0.8881 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.0258 S13: -0.0823 REMARK 3 S21: 0.0105 S22: 0.0073 S23: 0.0304 REMARK 3 S31: 0.1912 S32: -0.1719 S33: -0.0706 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1302 -9.1773 -11.1917 REMARK 3 T TENSOR REMARK 3 T11: 0.4774 T22: 0.3269 REMARK 3 T33: 0.3312 T12: -0.0726 REMARK 3 T13: 0.0223 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 2.0914 L22: 1.5502 REMARK 3 L33: 8.3912 L12: 0.1336 REMARK 3 L13: 3.7451 L23: -0.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.2163 S12: -0.5862 S13: -0.2030 REMARK 3 S21: 0.2084 S22: 0.0619 S23: 0.1625 REMARK 3 S31: 0.6633 S32: -1.0041 S33: -0.2138 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8663 2.7308 -39.6256 REMARK 3 T TENSOR REMARK 3 T11: 0.3953 T22: 0.2541 REMARK 3 T33: 0.3052 T12: 0.0603 REMARK 3 T13: -0.0024 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.2870 L22: 1.1050 REMARK 3 L33: 3.2840 L12: 0.0651 REMARK 3 L13: -0.0734 L23: -0.6013 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.1986 S13: -0.1390 REMARK 3 S21: -0.2872 S22: -0.0490 S23: 0.0041 REMARK 3 S31: 0.2882 S32: -0.0312 S33: 0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 59.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 21.60 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 22.10 REMARK 200 R MERGE FOR SHELL (I) : 2.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 25 % REMARK 280 PEG8000, 0.2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 279.06000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.53000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 209.29500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.76500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 348.82500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 279.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 139.53000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.76500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 209.29500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 348.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 THR B 106 REMARK 465 GLN B 107 REMARK 465 PRO B 108 REMARK 465 LEU B 109 REMARK 465 GLN B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 19 OE1 GLU B 22 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 18.82 57.71 REMARK 500 ASN B 19 73.53 50.95 REMARK 500 ASN B 33 -109.96 63.08 REMARK 500 THR B 90 -76.34 -123.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CMG A 1 182 UNP P01903 DRA_HUMAN 26 207 DBREF 8CMG B -3 190 PDB 8CMG 8CMG -3 190 DBREF 8CMG C 1 15 UNP P0DTD1 R1AB_SARS2 6420 6434 SEQADV 8CMG MET A 0 UNP P01903 INITIATING METHIONINE SEQRES 1 A 183 MET ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE SEQRES 2 A 183 TYR LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP SEQRES 3 A 183 PHE ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS SEQRES 4 A 183 LYS GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE SEQRES 5 A 183 ALA SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA SEQRES 6 A 183 VAL ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER SEQRES 7 A 183 ASN TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR SEQRES 8 A 183 VAL LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN SEQRES 9 A 183 VAL LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL SEQRES 10 A 183 VAL ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR SEQRES 11 A 183 THR GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP SEQRES 12 A 183 HIS LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SEQRES 13 A 183 SER THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP SEQRES 14 A 183 GLY LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP SEQRES 15 A 183 ALA SEQRES 1 B 194 MET GLY SER MET GLY ASP THR ARG PRO ARG PHE LEU TRP SEQRES 2 B 194 GLN LEU LYS PHE GLU CYS HIS PHE PHE ASN GLY THR GLU SEQRES 3 B 194 ARG VAL ARG LEU LEU GLU ARG CYS ILE TYR ASN GLN GLU SEQRES 4 B 194 GLU SER VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG SEQRES 5 B 194 ALA VAL THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP SEQRES 6 B 194 ASN SER GLN LYS ASP LEU LEU GLU GLN ARG ARG ALA ALA SEQRES 7 B 194 VAL ASP THR TYR CYS ARG HIS ASN TYR GLY VAL GLY GLU SEQRES 8 B 194 SER PHE THR VAL GLN ARG ARG VAL GLU PRO LYS VAL THR SEQRES 9 B 194 VAL TYR PRO SER LYS THR GLN PRO LEU GLN HIS HIS ASN SEQRES 10 B 194 LEU LEU VAL CYS SER VAL SER GLY PHE TYR PRO GLY SER SEQRES 11 B 194 ILE GLU VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS SEQRES 12 B 194 ALA GLY VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP SEQRES 13 B 194 TRP THR PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO SEQRES 14 B 194 ARG SER GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SEQRES 15 B 194 SER VAL THR SER PRO LEU THR VAL GLU TRP ARG ALA SEQRES 1 C 15 LEU ASP ALA TYR ASN MET MET ILE SER ALA GLY PHE SER SEQRES 2 C 15 LEU TRP HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET SO4 A 209 5 HET SO4 A 210 5 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET SO4 B 208 5 HET SO4 B 209 5 HET EDO C 101 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 16(C2 H6 O2) FORMUL 12 SO4 4(O4 S 2-) FORMUL 24 HOH *228(H2 O) HELIX 1 AA1 LEU A 45 PHE A 51 5 7 HELIX 2 AA2 GLU A 55 SER A 77 1 23 HELIX 3 AA3 THR B 51 LEU B 53 5 3 HELIX 4 AA4 GLY B 54 SER B 63 1 10 HELIX 5 AA5 GLN B 64 TYR B 78 1 15 HELIX 6 AA6 TYR B 78 GLU B 87 1 10 HELIX 7 AA7 SER B 88 THR B 90 5 3 SHEET 1 AA1 8 GLU A 40 TRP A 43 0 SHEET 2 AA1 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 AA1 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 AA1 8 GLU A 3 ASN A 15 -1 N ALA A 10 O MET A 23 SHEET 5 AA1 8 PHE B 7 PHE B 18 -1 O CYS B 15 N ILE A 7 SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O LEU B 27 N GLU B 14 SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O PHE B 40 N GLU B 28 SHEET 8 AA1 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 AA2 4 GLU A 88 THR A 93 0 SHEET 2 AA2 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA2 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA2 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 AA3 4 GLU A 88 THR A 93 0 SHEET 2 AA3 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA3 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA3 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 AA4 4 LYS A 126 PRO A 127 0 SHEET 2 AA4 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 AA4 4 TYR A 161 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 AA4 4 LEU A 174 TRP A 178 -1 O LEU A 174 N VAL A 165 SHEET 1 AA5 4 LYS B 98 SER B 104 0 SHEET 2 AA5 4 LEU B 114 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 AA5 4 PHE B 155 GLU B 162 -1 O LEU B 161 N LEU B 115 SHEET 4 AA5 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 AA6 4 LYS B 98 SER B 104 0 SHEET 2 AA6 4 LEU B 114 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 AA6 4 PHE B 155 GLU B 162 -1 O LEU B 161 N LEU B 115 SHEET 4 AA6 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 AA7 4 GLN B 136 GLU B 138 0 SHEET 2 AA7 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 AA7 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 AA7 4 LEU B 184 ARG B 189 -1 O VAL B 186 N CYS B 173 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.06 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.13 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 CISPEP 1 ASN A 15 PRO A 16 0 5.00 CISPEP 2 THR A 113 PRO A 114 0 -4.17 CISPEP 3 TYR B 123 PRO B 124 0 -2.13 CRYST1 61.250 61.250 418.590 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016327 0.009426 0.000000 0.00000 SCALE2 0.000000 0.018852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002389 0.00000