data_8CMM # _entry.id 8CMM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CMM pdb_00008cmm 10.2210/pdb8cmm/pdb WWPDB D_1292128714 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-03-06 2 'Structure model' 2 0 2024-06-12 3 'Structure model' 2 1 2024-07-03 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Occupancy of atoms on special symmetry positions' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Author supporting evidence' 4 2 'Structure model' 'Data collection' 5 2 'Structure model' 'Database references' 6 2 'Structure model' 'Derived calculations' 7 2 'Structure model' 'Non-polymer description' 8 2 'Structure model' Other 9 2 'Structure model' 'Refinement description' 10 2 'Structure model' 'Source and taxonomy' 11 2 'Structure model' 'Structure summary' 12 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' atom_type 4 2 'Structure model' cell 5 2 'Structure model' chem_comp 6 2 'Structure model' chem_comp_atom 7 2 'Structure model' citation 8 2 'Structure model' citation_author 9 2 'Structure model' entity 10 2 'Structure model' entity_src_gen 11 2 'Structure model' ndb_struct_conf_na 12 2 'Structure model' ndb_struct_na_base_pair 13 2 'Structure model' ndb_struct_na_base_pair_step 14 2 'Structure model' pdbx_contact_author 15 2 'Structure model' pdbx_distant_solvent_atoms 16 2 'Structure model' pdbx_entity_instance_feature 17 2 'Structure model' pdbx_entity_nonpoly 18 2 'Structure model' pdbx_entity_src_syn 19 2 'Structure model' pdbx_nonpoly_scheme 20 2 'Structure model' pdbx_refine_tls 21 2 'Structure model' pdbx_refine_tls_group 22 2 'Structure model' pdbx_struct_assembly_gen 23 2 'Structure model' pdbx_struct_conn_angle 24 2 'Structure model' pdbx_struct_special_symmetry 25 2 'Structure model' pdbx_validate_close_contact 26 2 'Structure model' pdbx_validate_planes 27 2 'Structure model' pdbx_validate_rmsd_angle 28 2 'Structure model' pdbx_validate_symm_contact 29 2 'Structure model' refine 30 2 'Structure model' refine_hist 31 2 'Structure model' refine_ls_restr 32 2 'Structure model' refine_ls_shell 33 2 'Structure model' software 34 2 'Structure model' struct 35 2 'Structure model' struct_asym 36 2 'Structure model' struct_conn 37 2 'Structure model' symmetry 38 3 'Structure model' citation 39 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_cell.volume' 2 2 'Structure model' '_chem_comp.formula' 3 2 'Structure model' '_chem_comp.formula_weight' 4 2 'Structure model' '_chem_comp.id' 5 2 'Structure model' '_chem_comp.name' 6 2 'Structure model' '_citation.country' 7 2 'Structure model' '_citation.journal_abbrev' 8 2 'Structure model' '_citation.journal_id_CSD' 9 2 'Structure model' '_citation.journal_id_ISSN' 10 2 'Structure model' '_citation.pdbx_database_id_DOI' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_ndb_struct_na_base_pair.buckle' 14 2 'Structure model' '_ndb_struct_na_base_pair.opening' 15 2 'Structure model' '_ndb_struct_na_base_pair.propeller' 16 2 'Structure model' '_ndb_struct_na_base_pair.shear' 17 2 'Structure model' '_ndb_struct_na_base_pair.stagger' 18 2 'Structure model' '_ndb_struct_na_base_pair.stretch' 19 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_rise' 20 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 21 2 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 22 2 'Structure model' '_ndb_struct_na_base_pair_step.rise' 23 2 'Structure model' '_ndb_struct_na_base_pair_step.roll' 24 2 'Structure model' '_ndb_struct_na_base_pair_step.shift' 25 2 'Structure model' '_ndb_struct_na_base_pair_step.slide' 26 2 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 27 2 'Structure model' '_ndb_struct_na_base_pair_step.tip' 28 2 'Structure model' '_ndb_struct_na_base_pair_step.twist' 29 2 'Structure model' '_ndb_struct_na_base_pair_step.x_displacement' 30 2 'Structure model' '_ndb_struct_na_base_pair_step.y_displacement' 31 2 'Structure model' '_pdbx_entity_instance_feature.auth_comp_id' 32 2 'Structure model' '_pdbx_entity_instance_feature.comp_id' 33 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 34 2 'Structure model' '_refine.B_iso_mean' 35 2 'Structure model' '_refine.aniso_B[1][1]' 36 2 'Structure model' '_refine.aniso_B[1][2]' 37 2 'Structure model' '_refine.aniso_B[1][3]' 38 2 'Structure model' '_refine.aniso_B[2][2]' 39 2 'Structure model' '_refine.aniso_B[2][3]' 40 2 'Structure model' '_refine.aniso_B[3][3]' 41 2 'Structure model' '_refine.correlation_coeff_Fo_to_Fc' 42 2 'Structure model' '_refine.correlation_coeff_Fo_to_Fc_free' 43 2 'Structure model' '_refine.details' 44 2 'Structure model' '_refine.ls_R_factor_R_free' 45 2 'Structure model' '_refine.ls_R_factor_R_work' 46 2 'Structure model' '_refine.ls_R_factor_obs' 47 2 'Structure model' '_refine.ls_number_reflns_R_free' 48 2 'Structure model' '_refine.ls_number_reflns_R_work' 49 2 'Structure model' '_refine.ls_number_reflns_obs' 50 2 'Structure model' '_refine.ls_percent_reflns_R_free' 51 2 'Structure model' '_refine.ls_percent_reflns_obs' 52 2 'Structure model' '_refine.overall_SU_B' 53 2 'Structure model' '_refine.overall_SU_ML' 54 2 'Structure model' '_refine.pdbx_R_Free_selection_details' 55 2 'Structure model' '_refine.pdbx_ls_cross_valid_method' 56 2 'Structure model' '_refine.pdbx_ls_sigma_F' 57 2 'Structure model' '_refine.pdbx_overall_ESU_R' 58 2 'Structure model' '_refine.pdbx_overall_ESU_R_Free' 59 2 'Structure model' '_refine.pdbx_overall_phase_error' 60 2 'Structure model' '_refine.pdbx_solvent_ion_probe_radii' 61 2 'Structure model' '_refine.pdbx_solvent_shrinkage_radii' 62 2 'Structure model' '_refine.pdbx_solvent_vdw_probe_radii' 63 2 'Structure model' '_refine.pdbx_stereochemistry_target_values' 64 2 'Structure model' '_refine.solvent_model_details' 65 2 'Structure model' '_refine_hist.cycle_id' 66 2 'Structure model' '_refine_hist.number_atoms_solvent' 67 2 'Structure model' '_refine_hist.number_atoms_total' 68 2 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 69 2 'Structure model' '_software.name' 70 2 'Structure model' '_software.version' 71 2 'Structure model' '_struct.title' 72 2 'Structure model' '_symmetry.space_group_name_Hall' 73 3 'Structure model' '_citation.journal_id_ISSN' 74 3 'Structure model' '_citation.journal_volume' 75 3 'Structure model' '_citation.page_first' 76 3 'Structure model' '_citation.page_last' 77 3 'Structure model' '_citation.pdbx_database_id_DOI' 78 3 'Structure model' '_citation.pdbx_database_id_PubMed' 79 3 'Structure model' '_citation.title' 80 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CMM _pdbx_database_status.recvd_initial_deposition_date 2023-02-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email c.j.cardin@reading.ac.uk _pdbx_contact_author.name_first Christine _pdbx_contact_author.name_last Cardin _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2556-9995 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Prieto Otoya, T.D.' 1 0000-0003-3168-8568 'Cardin, C.J.' 2 0000-0002-2556-9995 'McQuaid, K.M.' 3 0000-0002-3222-5584 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 9096 _citation.page_last 9103 _citation.title 'Re-pairing DNA: binding of a ruthenium phi complex to a double mismatch.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d4sc01448k _citation.pdbx_database_id_PubMed 38903237 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prieto Otoya, T.D.' 1 ? primary 'McQuaid, K.T.' 2 ? primary 'Paterson, N.G.' 3 ? primary 'Cardin, D.J.' 4 ? primary 'Kellett, A.' 5 0000-0002-8947-1401 primary 'Cardin, C.J.' 6 0000-0002-2556-9995 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*TP*AP*TP*AP*AP*TP*GP*CP*G)-3') ; 3662.404 1 ? ? ? ? 2 non-polymer syn 'ruthenium polypyridyl complex (delta enantiomer)' 665.707 1 ? ? ? ? 3 non-polymer syn 'ruthenium polypyridyl complex (lambda enantiomer)' 665.707 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 non-polymer nat 'LITHIUM ION' 6.941 1 ? ? ? ? 6 water nat water 18.015 70 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCTATAATGCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ruthenium polypyridyl complex (delta enantiomer)' V70 3 'ruthenium polypyridyl complex (lambda enantiomer)' V7F 4 'POTASSIUM ION' K 5 'LITHIUM ION' LI 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LI non-polymer . 'LITHIUM ION' ? 'Li 1' 6.941 V70 non-polymer . 'ruthenium polypyridyl complex (delta enantiomer)' ? 'C38 H24 N6 Ru 2' 665.707 V7F non-polymer . 'ruthenium polypyridyl complex (lambda enantiomer)' ? 'C38 H24 N6 Ru 2' 665.707 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V70 1 101 1 V70 DPP A . C 3 V7F 1 102 2 V7F LPP A . D 4 K 1 103 1 K K A . E 4 K 1 104 2 K K A . F 5 LI 1 105 1 LI LI A . G 6 HOH 1 201 54 HOH HOH A . G 6 HOH 2 202 81 HOH HOH A . G 6 HOH 3 203 55 HOH HOH A . G 6 HOH 4 204 74 HOH HOH A . G 6 HOH 5 205 53 HOH HOH A . G 6 HOH 6 206 48 HOH HOH A . G 6 HOH 7 207 37 HOH HOH A . G 6 HOH 8 208 3 HOH HOH A . G 6 HOH 9 209 62 HOH HOH A . G 6 HOH 10 210 6 HOH HOH A . G 6 HOH 11 211 14 HOH HOH A . G 6 HOH 12 212 7 HOH HOH A . G 6 HOH 13 213 22 HOH HOH A . G 6 HOH 14 214 40 HOH HOH A . G 6 HOH 15 215 31 HOH HOH A . G 6 HOH 16 216 35 HOH HOH A . G 6 HOH 17 217 67 HOH HOH A . G 6 HOH 18 218 23 HOH HOH A . G 6 HOH 19 219 52 HOH HOH A . G 6 HOH 20 220 29 HOH HOH A . G 6 HOH 21 221 11 HOH HOH A . G 6 HOH 22 222 10 HOH HOH A . G 6 HOH 23 223 45 HOH HOH A . G 6 HOH 24 224 8 HOH HOH A . G 6 HOH 25 225 32 HOH HOH A . G 6 HOH 26 226 16 HOH HOH A . G 6 HOH 27 227 33 HOH HOH A . G 6 HOH 28 228 9 HOH HOH A . G 6 HOH 29 229 69 HOH HOH A . G 6 HOH 30 230 27 HOH HOH A . G 6 HOH 31 231 68 HOH HOH A . G 6 HOH 32 232 28 HOH HOH A . G 6 HOH 33 233 19 HOH HOH A . G 6 HOH 34 234 77 HOH HOH A . G 6 HOH 35 235 43 HOH HOH A . G 6 HOH 36 236 70 HOH HOH A . G 6 HOH 37 237 26 HOH HOH A . G 6 HOH 38 238 38 HOH HOH A . G 6 HOH 39 239 12 HOH HOH A . G 6 HOH 40 240 65 HOH HOH A . G 6 HOH 41 241 59 HOH HOH A . G 6 HOH 42 242 61 HOH HOH A . G 6 HOH 43 243 17 HOH HOH A . G 6 HOH 44 244 5 HOH HOH A . G 6 HOH 45 245 50 HOH HOH A . G 6 HOH 46 246 1 HOH HOH A . G 6 HOH 47 247 66 HOH HOH A . G 6 HOH 48 248 36 HOH HOH A . G 6 HOH 49 249 34 HOH HOH A . G 6 HOH 50 250 4 HOH HOH A . G 6 HOH 51 251 30 HOH HOH A . G 6 HOH 52 252 18 HOH HOH A . G 6 HOH 53 253 13 HOH HOH A . G 6 HOH 54 254 49 HOH HOH A . G 6 HOH 55 255 20 HOH HOH A . G 6 HOH 56 256 2 HOH HOH A . G 6 HOH 57 257 79 HOH HOH A . G 6 HOH 58 258 51 HOH HOH A . G 6 HOH 59 259 41 HOH HOH A . G 6 HOH 60 260 46 HOH HOH A . G 6 HOH 61 261 56 HOH HOH A . G 6 HOH 62 262 63 HOH HOH A . G 6 HOH 63 263 25 HOH HOH A . G 6 HOH 64 264 21 HOH HOH A . G 6 HOH 65 265 58 HOH HOH A . G 6 HOH 66 266 60 HOH HOH A . G 6 HOH 67 267 24 HOH HOH A . G 6 HOH 68 268 15 HOH HOH A . G 6 HOH 69 269 47 HOH HOH A . G 6 HOH 70 270 57 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0415 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8CMM _cell.details ? _cell.formula_units_Z ? _cell.length_a 31.395 _cell.length_a_esd ? _cell.length_b 48.645 _cell.length_b_esd ? _cell.length_c 54.192 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CMM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01M MgCl2 hexahydrate, 0.05M HEPES sodium, and 4M LiCl' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-01-23 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8260 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8260 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 10.08 _reflns.entry_id 8CMM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.90 _reflns.d_resolution_low 36.20 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28800 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.046 _reflns.pdbx_Rpim_I_all 0.013 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 0.90 _reflns_shell.d_res_low 0.92 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all 4660 _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 718 _reflns_shell.percent_possible_obs 47.7 _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs 0.3 _reflns_shell.pdbx_Rrim_I_all 2.233 _reflns_shell.pdbx_Rpim_I_all 0.834 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.294 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.061 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.05 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.24 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.29 _refine.B_iso_max ? _refine.B_iso_mean 11.224 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.983 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8CMM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.90 _refine.ls_d_res_low 36.20 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27375 _refine.ls_number_reflns_R_free 1425 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.47 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.13700 _refine.ls_R_factor_R_free 0.15940 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.13592 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.018 _refine.pdbx_overall_ESU_R_Free 0.019 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.667 _refine.overall_SU_ML 0.016 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 0.90 _refine_hist.d_res_low 36.20 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 406 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 243 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.013 430 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.018 209 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.078 2.130 679 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.662 1.863 477 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.102 0.200 55 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.042 0.020 261 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 98 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 0.948 1.194 430 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.947 1.193 431 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.360 2.199 680 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 2.142 20.03 871 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 1.797 19.43 859 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 4.534 3.000 639 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 0.900 _refine_ls_shell.d_res_low 0.923 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_R_work 1096 _refine_ls_shell.percent_reflns_obs 50.95 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.416 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.430 # _struct.entry_id 8CMM _struct.title 'Re-pairing DNA - binding of a ruthenium phi complex to a double mismatch' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CMM _struct_keywords.text 'DNA mismatch, Ruthenium, Polypyridyl, Intercalation, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8CMM _struct_ref.pdbx_db_accession 8CMM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8CMM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8CMM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_445 -x-1,-y-1/2,z -1.0000000000 0.0000000000 0.0000000000 -31.3950000000 0.0000000000 -1.0000000000 0.0000000000 -24.3225000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D K . K ? ? ? 1_555 G HOH . O ? ? A K 103 A HOH 213 7_355 ? ? ? ? ? ? ? 3.060 ? ? metalc2 metalc ? ? D K . K ? ? ? 1_555 G HOH . O ? ? A K 103 A HOH 221 4_445 ? ? ? ? ? ? ? 3.142 ? ? metalc3 metalc ? ? D K . K ? ? ? 1_555 G HOH . O ? ? A K 103 A HOH 230 1_555 ? ? ? ? ? ? ? 3.125 ? ? metalc4 metalc ? ? D K . K ? ? ? 1_555 G HOH . O ? ? A K 103 A HOH 267 4_445 ? ? ? ? ? ? ? 3.098 ? ? metalc5 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? A K 104 A HOH 208 1_455 ? ? ? ? ? ? ? 3.254 ? ? metalc6 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? A K 104 A HOH 218 1_555 ? ? ? ? ? ? ? 3.317 ? ? metalc7 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? A K 104 A HOH 224 1_555 ? ? ? ? ? ? ? 3.214 ? ? metalc8 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? A K 104 A HOH 236 1_555 ? ? ? ? ? ? ? 3.101 ? ? metalc9 metalc ? ? F LI . LI ? ? ? 1_555 G HOH . O ? ? A LI 105 A HOH 208 1_455 ? ? ? ? ? ? ? 1.929 ? ? metalc10 metalc ? ? F LI . LI ? ? ? 1_555 G HOH . O ? ? A LI 105 A HOH 210 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc11 metalc ? ? F LI . LI ? ? ? 1_555 G HOH . O ? ? A LI 105 A HOH 224 1_555 ? ? ? ? ? ? ? 1.887 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 12 N1 A ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 12 N1 B ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 12 O6 A ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 12 O6 B ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 12 N2 A ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 12 N2 B ? A DC 1 A DG 12 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 A ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 B ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 A ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 B ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 A ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 B ? A DG 2 A DC 11 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 3 A DG 10 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 3 A DG 10 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 3 A DG 10 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 8 N1 ? ? A DT 4 A DA 8 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 8 N6 ? ? A DT 4 A DA 8 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 6 A DA 7 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 6 A DA 7 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 7 A DT 6 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 7 A DT 6 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 8 A DT 4 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 8 A DT 4 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 10 A DC 3 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 10 A DC 3 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 10 A DC 3 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 A ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N3 B ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 N4 A ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 11 N4 B ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 11 O2 A ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 11 O2 B ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 12 N1 A ? ? 1_555 A DC 1 N3 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 12 N1 B ? ? 1_555 A DC 1 N3 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 12 N2 A ? ? 1_555 A DC 1 O2 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 12 N2 B ? ? 1_555 A DC 1 O2 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 12 O6 A ? ? 1_555 A DC 1 N4 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 12 O6 B ? ? 1_555 A DC 1 N4 ? ? A DG 12 A DC 1 6_445 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 213 ? 7_355 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 221 ? 4_445 137.5 ? 2 O ? G HOH . ? A HOH 213 ? 7_355 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 88.0 ? 3 O ? G HOH . ? A HOH 221 ? 4_445 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 72.7 ? 4 O ? G HOH . ? A HOH 213 ? 7_355 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 267 ? 4_445 113.6 ? 5 O ? G HOH . ? A HOH 221 ? 4_445 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 267 ? 4_445 95.8 ? 6 O ? G HOH . ? A HOH 230 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? G HOH . ? A HOH 267 ? 4_445 71.3 ? 7 O ? G HOH . ? A HOH 208 ? 1_455 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 218 ? 1_555 64.7 ? 8 O ? G HOH . ? A HOH 208 ? 1_455 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 224 ? 1_555 57.7 ? 9 O ? G HOH . ? A HOH 218 ? 1_555 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 224 ? 1_555 113.7 ? 10 O ? G HOH . ? A HOH 208 ? 1_455 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 236 ? 1_555 103.8 ? 11 O ? G HOH . ? A HOH 218 ? 1_555 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 236 ? 1_555 76.9 ? 12 O ? G HOH . ? A HOH 224 ? 1_555 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 236 ? 1_555 144.1 ? 13 O ? G HOH . ? A HOH 208 ? 1_455 LI ? F LI . ? A LI 105 ? 1_555 O ? G HOH . ? A HOH 210 ? 1_555 102.3 ? 14 O ? G HOH . ? A HOH 208 ? 1_455 LI ? F LI . ? A LI 105 ? 1_555 O ? G HOH . ? A HOH 224 ? 1_555 109.7 ? 15 O ? G HOH . ? A HOH 210 ? 1_555 LI ? F LI . ? A LI 105 ? 1_555 O ? G HOH . ? A HOH 224 ? 1_555 111.4 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A DG 12 ? B 1_555 O A HOH 248 ? ? 8_544 2.12 2 1 N7 A DG 2 ? ? 1_555 LI A LI 105 ? ? 1_655 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? B 127.09 119.70 7.39 1.20 Y 2 1 "O5'" A DC 11 ? A P A DC 11 ? A OP2 A DC 11 ? A 98.69 105.70 -7.01 0.90 N 3 1 "O3'" A DC 11 ? A P A DG 12 ? A OP1 A DG 12 ? A 89.18 105.20 -16.02 2.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 5 ? ? 0.067 'SIDE CHAIN' 2 1 DC A 11 ? A 0.068 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 216 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 8CMM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 268 ? 5.90 . 2 1 O ? A HOH 269 ? . 6.50 3 1 O ? A HOH 270 ? . 7.51 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 K K K N N 147 LI LI LI N N 148 V70 C01 C Y N 149 V70 C02 C Y N 150 V70 C03 C Y N 151 V70 C04 C Y N 152 V70 C05 C Y N 153 V70 C06 C Y N 154 V70 C07 C Y N 155 V70 C08 C Y N 156 V70 C09 C Y N 157 V70 C10 C Y N 158 V70 C11 C Y N 159 V70 C12 C Y N 160 V70 C13 C Y N 161 V70 C14 C Y N 162 V70 C15 C Y N 163 V70 C16 C Y N 164 V70 C17 C Y N 165 V70 C18 C Y N 166 V70 C19 C Y N 167 V70 C20 C Y N 168 V70 C21 C Y N 169 V70 C22 C Y N 170 V70 C23 C Y N 171 V70 C24 C Y N 172 V70 C25 C Y N 173 V70 C26 C Y N 174 V70 C27 C Y N 175 V70 C28 C Y N 176 V70 C29 C Y N 177 V70 C30 C Y N 178 V70 C31 C Y N 179 V70 C32 C Y N 180 V70 C33 C Y N 181 V70 C34 C Y N 182 V70 C35 C Y N 183 V70 C36 C Y N 184 V70 C37 C Y N 185 V70 C38 C Y N 186 V70 N01 N Y N 187 V70 N02 N N N 188 V70 N03 N Y N 189 V70 N04 N N N 190 V70 N05 N Y N 191 V70 N06 N Y N 192 V70 RU01 RU N N 193 V70 H01 H N N 194 V70 H02 H N N 195 V70 H03 H N N 196 V70 H04 H N N 197 V70 H05 H N N 198 V70 H06 H N N 199 V70 H07 H N N 200 V70 H08 H N N 201 V70 H09 H N N 202 V70 H10 H N N 203 V70 H11 H N N 204 V70 H25 H N N 205 V70 H12 H N N 206 V70 H13 H N N 207 V70 H14 H N N 208 V70 H15 H N N 209 V70 H16 H N N 210 V70 H17 H N N 211 V70 H18 H N N 212 V70 H19 H N N 213 V70 H20 H N N 214 V70 H21 H N N 215 V70 H22 H N N 216 V70 H23 H N N 217 V7F C11 C Y N 218 V7F C12 C Y N 219 V7F C13 C Y N 220 V7F C14 C Y N 221 V7F C15 C Y N 222 V7F C16 C Y N 223 V7F C17 C Y N 224 V7F C18 C Y N 225 V7F C19 C Y N 226 V7F C20 C Y N 227 V7F C21 C Y N 228 V7F C22 C Y N 229 V7F C23 C Y N 230 V7F C24 C Y N 231 V7F C25 C Y N 232 V7F C26 C Y N 233 V7F C29 C Y N 234 V7F C30 C Y N 235 V7F C31 C Y N 236 V7F C32 C Y N 237 V7F C33 C Y N 238 V7F C34 C Y N 239 V7F C35 C Y N 240 V7F C36 C Y N 241 V7F C37 C Y N 242 V7F C38 C Y N 243 V7F C01 C Y N 244 V7F C02 C Y N 245 V7F C03 C Y N 246 V7F C04 C Y N 247 V7F C05 C Y N 248 V7F C06 C Y N 249 V7F C07 C Y N 250 V7F C08 C Y N 251 V7F C09 C Y N 252 V7F C10 C Y N 253 V7F C27 C Y N 254 V7F C28 C Y N 255 V7F N01 N Y N 256 V7F N02 N N N 257 V7F N03 N Y N 258 V7F N04 N N N 259 V7F N05 N Y N 260 V7F N06 N Y N 261 V7F RU01 RU N N 262 V7F H03 H N N 263 V7F H04 H N N 264 V7F H05 H N N 265 V7F H06 H N N 266 V7F H07 H N N 267 V7F H08 H N N 268 V7F H09 H N N 269 V7F H10 H N N 270 V7F H11 H N N 271 V7F H25 H N N 272 V7F H14 H N N 273 V7F H15 H N N 274 V7F H16 H N N 275 V7F H17 H N N 276 V7F H18 H N N 277 V7F H19 H N N 278 V7F H20 H N N 279 V7F H21 H N N 280 V7F H22 H N N 281 V7F H23 H N N 282 V7F H01 H N N 283 V7F H02 H N N 284 V7F H12 H N N 285 V7F H13 H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 V70 C01 C08 doub Y N 152 V70 C01 C11 sing Y N 153 V70 C01 N03 sing Y N 154 V70 C02 C03 doub Y N 155 V70 C02 C16 sing Y N 156 V70 C02 C18 sing Y N 157 V70 C03 C07 sing Y N 158 V70 C03 N04 sing N N 159 V70 C04 C10 doub Y N 160 V70 C04 C23 sing Y N 161 V70 C04 N06 sing Y N 162 V70 C05 C20 sing Y N 163 V70 C05 C24 doub Y N 164 V70 C06 C13 sing Y N 165 V70 C06 C15 doub Y N 166 V70 C07 C14 doub Y N 167 V70 C07 N02 sing N N 168 V70 C08 C17 sing Y N 169 V70 C08 N05 sing Y N 170 V70 C09 C14 sing Y N 171 V70 C09 C16 doub Y N 172 V70 C09 C36 sing Y N 173 V70 C10 C13 sing Y N 174 V70 C10 N01 sing Y N 175 V70 C11 C25 sing Y N 176 V70 C11 C31 doub Y N 177 V70 C12 C21 sing Y N 178 V70 C12 N03 doub Y N 179 V70 C13 C27 doub Y N 180 V70 C14 C26 sing Y N 181 V70 C15 C19 sing Y N 182 V70 C16 C30 sing Y N 183 V70 C17 C29 doub Y N 184 V70 C17 C33 sing Y N 185 V70 C18 C35 doub Y N 186 V70 C19 N01 doub Y N 187 V70 C20 N06 doub Y N 188 V70 C21 C25 doub Y N 189 V70 C22 C34 sing Y N 190 V70 C22 N05 doub Y N 191 V70 C23 C24 sing Y N 192 V70 C23 C28 doub Y N 193 V70 C26 C32 doub Y N 194 V70 C27 C28 sing Y N 195 V70 C29 C31 sing Y N 196 V70 C30 C37 doub Y N 197 V70 C32 C38 sing Y N 198 V70 C33 C34 doub Y N 199 V70 C35 C37 sing Y N 200 V70 C36 C38 doub Y N 201 V70 N01 RU01 sing N N 202 V70 N02 RU01 sing N N 203 V70 N03 RU01 sing N N 204 V70 N04 RU01 sing N N 205 V70 N05 RU01 sing N N 206 V70 N06 RU01 sing N N 207 V70 C05 H01 sing N N 208 V70 C06 H02 sing N N 209 V70 C12 H03 sing N N 210 V70 C15 H04 sing N N 211 V70 C18 H05 sing N N 212 V70 C19 H06 sing N N 213 V70 C20 H07 sing N N 214 V70 C21 H08 sing N N 215 V70 C22 H09 sing N N 216 V70 C24 H10 sing N N 217 V70 C25 H11 sing N N 218 V70 C26 H25 sing N N 219 V70 C27 H12 sing N N 220 V70 C28 H13 sing N N 221 V70 C29 H14 sing N N 222 V70 C30 H15 sing N N 223 V70 C31 H16 sing N N 224 V70 C32 H17 sing N N 225 V70 C33 H18 sing N N 226 V70 C34 H19 sing N N 227 V70 C35 H20 sing N N 228 V70 C36 H21 sing N N 229 V70 C37 H22 sing N N 230 V70 C38 H23 sing N N 231 V7F C11 C25 doub Y N 232 V7F C11 C31 sing Y N 233 V7F C11 C01 sing Y N 234 V7F C12 C21 doub Y N 235 V7F C12 N03 sing Y N 236 V7F C13 C06 doub Y N 237 V7F C13 C10 sing Y N 238 V7F C13 C27 sing Y N 239 V7F C14 C26 doub Y N 240 V7F C14 C07 sing Y N 241 V7F C14 C09 sing Y N 242 V7F C15 C19 doub Y N 243 V7F C15 C06 sing Y N 244 V7F C16 C30 doub Y N 245 V7F C16 C02 sing Y N 246 V7F C16 C09 sing Y N 247 V7F C17 C29 sing Y N 248 V7F C17 C33 doub Y N 249 V7F C17 C08 sing Y N 250 V7F C18 C35 sing Y N 251 V7F C18 C02 doub Y N 252 V7F C19 N01 sing Y N 253 V7F C20 C05 doub Y N 254 V7F C20 N06 sing Y N 255 V7F C21 C25 sing Y N 256 V7F C22 C34 doub Y N 257 V7F C22 N05 sing Y N 258 V7F C23 C24 doub Y N 259 V7F C23 C04 sing Y N 260 V7F C23 C28 sing Y N 261 V7F C24 C05 sing Y N 262 V7F C26 C32 sing Y N 263 V7F C29 C31 doub Y N 264 V7F C30 C37 sing Y N 265 V7F C32 C38 doub Y N 266 V7F C33 C34 sing Y N 267 V7F C35 C37 doub Y N 268 V7F C36 C38 sing Y N 269 V7F C36 C09 doub Y N 270 V7F C01 C08 sing Y N 271 V7F C01 N03 doub Y N 272 V7F C02 C03 sing Y N 273 V7F C03 C07 doub Y N 274 V7F C03 N04 sing N N 275 V7F C04 C10 sing Y N 276 V7F C04 N06 doub Y N 277 V7F C07 N02 sing N N 278 V7F C08 N05 doub Y N 279 V7F C10 N01 doub Y N 280 V7F C27 C28 doub Y N 281 V7F N01 RU01 sing N N 282 V7F N02 RU01 sing N N 283 V7F N03 RU01 sing N N 284 V7F N04 RU01 sing N N 285 V7F N05 RU01 sing N N 286 V7F N06 RU01 sing N N 287 V7F C12 H03 sing N N 288 V7F C15 H04 sing N N 289 V7F C18 H05 sing N N 290 V7F C19 H06 sing N N 291 V7F C20 H07 sing N N 292 V7F C21 H08 sing N N 293 V7F C22 H09 sing N N 294 V7F C24 H10 sing N N 295 V7F C25 H11 sing N N 296 V7F C26 H25 sing N N 297 V7F C29 H14 sing N N 298 V7F C30 H15 sing N N 299 V7F C31 H16 sing N N 300 V7F C32 H17 sing N N 301 V7F C33 H18 sing N N 302 V7F C34 H19 sing N N 303 V7F C35 H20 sing N N 304 V7F C36 H21 sing N N 305 V7F C37 H22 sing N N 306 V7F C38 H23 sing N N 307 V7F C05 H01 sing N N 308 V7F C06 H02 sing N N 309 V7F C27 H12 sing N N 310 V7F C28 H13 sing N N 311 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8CMM 'double helix' 8CMM 'b-form double helix' 8CMM 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 12 6_445 0.329 -0.317 0.107 5.271 -17.383 -2.475 1 A_DC1:DG12_A A 1 ? A 12 ? 19 1 1 A DG 2 1_555 A DC 11 6_445 -0.310 -0.150 0.073 0.999 -12.560 -3.485 2 A_DG2:DC11_A A 2 ? A 11 ? 19 1 1 A DC 3 1_555 A DG 10 6_445 0.244 -0.162 0.093 4.086 -11.329 -0.759 3 A_DC3:DG10_A A 3 ? A 10 ? 19 1 1 A DT 4 1_555 A DA 8 6_445 -0.152 -0.077 -0.354 13.602 -5.669 4.858 4 A_DT4:DA8_A A 4 ? A 8 ? 20 1 1 A DC 1 6_445 A DG 12 1_555 0.329 -0.317 0.107 5.271 -17.383 -2.475 5 A_DC1:DG12_A A 1 ? A 12 ? 19 1 1 A DG 2 6_445 A DC 11 1_555 -0.310 -0.150 0.073 0.999 -12.560 -3.485 6 A_DG2:DC11_A A 2 ? A 11 ? 19 1 1 A DC 3 6_445 A DG 10 1_555 0.244 -0.162 0.093 4.086 -11.329 -0.759 7 A_DC3:DG10_A A 3 ? A 10 ? 19 1 1 A DT 4 6_445 A DA 8 1_555 -0.152 -0.077 -0.354 13.602 -5.669 4.858 8 A_DT4:DA8_A A 4 ? A 8 ? 20 1 1 A DT 6 1_555 A DA 7 6_445 -0.077 -0.099 0.295 -15.646 18.803 1.348 9 A_DT6:DA7_A A 6 ? A 7 ? 20 1 1 A DA 7 1_555 A DT 6 6_445 0.077 -0.099 0.295 15.646 18.803 1.348 10 A_DA7:DT6_A A 7 ? A 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 12 6_445 A DG 2 1_555 A DC 11 6_445 0.516 0.555 3.457 3.398 4.419 34.376 0.204 -0.306 3.532 7.417 -5.703 34.811 1 AA_DC1DG2:DC11DG12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A DG 2 1_555 A DC 11 6_445 A DC 3 1_555 A DG 10 6_445 0.638 -0.661 3.219 -2.123 2.582 35.129 -1.462 -1.358 3.121 4.266 3.507 35.282 2 AA_DG2DC3:DG10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A DC 3 1_555 A DG 10 6_445 A DT 4 1_555 A DA 8 6_445 -0.944 -0.844 3.083 2.463 2.738 19.270 -3.680 3.854 2.795 8.083 -7.272 19.615 3 AA_DC3DT4:DA8DG10_AA A 3 ? A 10 ? A 4 ? A 8 ? 1 A DC 1 6_445 A DG 12 1_555 A DG 2 6_445 A DC 11 1_555 0.516 0.555 3.457 3.398 4.419 34.376 0.204 -0.306 3.532 7.417 -5.703 34.811 4 AA_DC1DG2:DC11DG12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A DG 2 6_445 A DC 11 1_555 A DC 3 6_445 A DG 10 1_555 0.638 -0.661 3.219 -2.123 2.582 35.129 -1.462 -1.358 3.121 4.266 3.507 35.282 5 AA_DG2DC3:DG10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A DC 3 6_445 A DG 10 1_555 A DT 4 6_445 A DA 8 1_555 -0.944 -0.844 3.083 2.463 2.738 19.270 -3.680 3.854 2.795 8.083 -7.272 19.615 6 AA_DC3DT4:DA8DG10_AA A 3 ? A 10 ? A 4 ? A 8 ? 1 A DT 6 1_555 A DA 7 6_445 A DA 7 1_555 A DT 6 6_445 0.000 2.668 2.667 0.000 7.672 5.159 -4.481 0.000 3.703 56.131 0.000 9.243 7 AA_DT6DA7:DT6DA7_AA A 6 ? A 7 ? A 7 ? A 6 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'H2020 Marie Curie Actions of the European Commission' 'European Union' 861381 1 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/T008342/1 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 V70 ? ? V70 ? ? 'SUBJECT OF INVESTIGATION' ? 2 V7F ? ? V7F ? ? 'SUBJECT OF INVESTIGATION' ? # _atom_sites.entry_id 8CMM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.031852 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020557 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018453 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H K LI N O P RU # loop_