HEADER OXIDOREDUCTASE 24-FEB-23 8CNR TITLE HYBRID CLUSTER PROTEIN FROM THE THERMOPHILIC METHANOGEN TITLE 2 METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS AS ISOLATED IN A REDUCED TITLE 3 STATE AT 1.45-A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYBRID CLUSTER PROTEIN FROM THE THERMOPHILIC METHANOGEN COMPND 3 METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS; COMPND 4 CHAIN: A; COMPND 5 EC: 1.7.99.1; COMPND 6 OTHER_DETAILS: COMPARED TO THE AUTOMATIC GENE ANNOTATION, THE COMPND 7 SEQUENCE HAS 5 EXTRA RESIDUES IN N-TERMINAL (MRPSK). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS DSM SOURCE 3 2095; SOURCE 4 ORGANISM_TAXID: 523845; SOURCE 5 STRAIN: DSM 2095; SOURCE 6 VARIANT: /; SOURCE 7 CELL_LINE: /; SOURCE 8 ATCC: /; SOURCE 9 ORGAN: /; SOURCE 10 TISSUE: / KEYWDS HYBRID CLUSTER, PRISMANE PROTEIN, HYBRID CLUSTER PROTEIN, KEYWDS 2 METHANOGENIC ARCHAEA, ANAEROBIC BIOCHEMISTRY, THERMOPHILE, KEYWDS 3 METALLOCLUSTER, NITRIC OXIDE REDUCTASE, HYDROXYLAMINE, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.N.LEMAIRE,T.WAGNER REVDAT 3 19-JUN-24 8CNR 1 REMARK REVDAT 2 07-JUN-23 8CNR 1 JRNL REVDAT 1 19-APR-23 8CNR 0 JRNL AUTH O.N.LEMAIRE,M.BELHAMRI,T.WAGNER JRNL TITL STRUCTURAL AND BIOCHEMICAL ELUCIDATION OF CLASS I HYBRID JRNL TITL 2 CLUSTER PROTEIN NATIVELY EXTRACTED FROM A MARINE JRNL TITL 3 METHANOGENIC ARCHAEON. JRNL REF FRONT MICROBIOL V. 14 79204 2023 JRNL REFN ESSN 1664-302X JRNL PMID 37250035 JRNL DOI 10.3389/FMICB.2023.1179204 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 103571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 5332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0600 - 4.5100 1.00 3593 171 0.1621 0.1703 REMARK 3 2 4.5100 - 3.5800 1.00 3444 175 0.1053 0.1201 REMARK 3 3 3.5800 - 3.1300 1.00 3379 175 0.1171 0.1469 REMARK 3 4 3.1300 - 2.8400 1.00 3342 205 0.1171 0.1348 REMARK 3 5 2.8400 - 2.6400 1.00 3331 209 0.1156 0.1302 REMARK 3 6 2.6400 - 2.4800 1.00 3324 191 0.1099 0.1368 REMARK 3 7 2.4800 - 2.3600 1.00 3325 176 0.1097 0.1524 REMARK 3 8 2.3600 - 2.2500 1.00 3312 204 0.1073 0.1423 REMARK 3 9 2.2500 - 2.1700 1.00 3333 160 0.1132 0.1287 REMARK 3 10 2.1700 - 2.0900 1.00 3302 190 0.1170 0.1327 REMARK 3 11 2.0900 - 2.0300 1.00 3318 178 0.1172 0.1419 REMARK 3 12 2.0300 - 1.9700 1.00 3291 163 0.1154 0.1283 REMARK 3 13 1.9700 - 1.9200 1.00 3315 170 0.1190 0.1350 REMARK 3 14 1.9200 - 1.8700 0.99 3289 185 0.1241 0.1375 REMARK 3 15 1.8700 - 1.8300 1.00 3316 174 0.1276 0.1489 REMARK 3 16 1.8300 - 1.7900 1.00 3252 185 0.1314 0.1720 REMARK 3 17 1.7900 - 1.7500 1.00 3296 159 0.1467 0.1600 REMARK 3 18 1.7500 - 1.7200 0.99 3278 175 0.1514 0.1762 REMARK 3 19 1.7200 - 1.6900 0.99 3247 182 0.1530 0.1946 REMARK 3 20 1.6900 - 1.6600 0.99 3231 214 0.1514 0.1644 REMARK 3 21 1.6600 - 1.6300 0.99 3252 187 0.1585 0.1720 REMARK 3 22 1.6300 - 1.6100 0.99 3232 199 0.1632 0.1810 REMARK 3 23 1.6100 - 1.5900 0.98 3199 194 0.1722 0.1785 REMARK 3 24 1.5900 - 1.5600 0.98 3181 189 0.1778 0.2055 REMARK 3 25 1.5600 - 1.5400 0.97 3249 144 0.1826 0.1716 REMARK 3 26 1.5400 - 1.5200 0.97 3190 163 0.1937 0.2353 REMARK 3 27 1.5200 - 1.5000 0.97 3162 162 0.2131 0.2658 REMARK 3 28 1.5000 - 1.4800 0.95 3142 177 0.2293 0.2461 REMARK 3 29 1.4800 - 1.4700 0.95 3146 140 0.2481 0.2644 REMARK 3 30 1.4700 - 1.4500 0.89 2968 136 0.2668 0.2255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4492 REMARK 3 ANGLE : 1.288 6108 REMARK 3 CHIRALITY : 0.093 701 REMARK 3 PLANARITY : 0.011 789 REMARK 3 DIHEDRAL : 13.639 1674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9752 19.9446 -38.8272 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0729 REMARK 3 T33: 0.0879 T12: 0.0027 REMARK 3 T13: -0.0099 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.7876 L22: 0.6296 REMARK 3 L33: 0.6656 L12: 0.0360 REMARK 3 L13: -0.5253 L23: 0.0586 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.1191 S13: -0.0334 REMARK 3 S21: -0.0658 S22: -0.0081 S23: -0.0321 REMARK 3 S31: 0.0459 S32: 0.0111 S33: -0.0130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6940 12.0796 -47.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.0769 REMARK 3 T33: 0.1078 T12: 0.0127 REMARK 3 T13: 0.0259 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 4.8897 L22: 2.8392 REMARK 3 L33: 2.0290 L12: 1.8839 REMARK 3 L13: -2.6318 L23: 0.1246 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.0872 S13: -0.4217 REMARK 3 S21: -0.1164 S22: 0.0370 S23: -0.2170 REMARK 3 S31: 0.0814 S32: -0.0048 S33: -0.1116 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4287 25.8701 -26.5672 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0593 REMARK 3 T33: 0.0818 T12: -0.0049 REMARK 3 T13: -0.0040 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4476 L22: 0.9013 REMARK 3 L33: 0.4169 L12: -0.0160 REMARK 3 L13: -0.0004 L23: 0.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0084 S13: -0.0152 REMARK 3 S21: 0.0529 S22: 0.0019 S23: -0.0680 REMARK 3 S31: 0.0435 S32: 0.0221 S33: -0.0130 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2946 41.8383 -31.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0602 REMARK 3 T33: 0.0981 T12: 0.0086 REMARK 3 T13: -0.0057 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9002 L22: 1.5031 REMARK 3 L33: 0.6220 L12: -0.0234 REMARK 3 L13: 0.0888 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0288 S13: 0.0958 REMARK 3 S21: -0.0477 S22: -0.0428 S23: 0.1279 REMARK 3 S31: -0.0540 S32: -0.0313 S33: 0.0341 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8653 46.1921 -33.5252 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0113 REMARK 3 T33: 0.1462 T12: -0.0112 REMARK 3 T13: -0.0130 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.1659 L22: 1.0928 REMARK 3 L33: 2.3593 L12: -0.1449 REMARK 3 L13: 0.6647 L23: -0.1496 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.2611 S13: 0.0660 REMARK 3 S21: -0.1198 S22: -0.0089 S23: 0.0766 REMARK 3 S31: -0.0784 S32: -0.0099 S33: -0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6457 35.9695 -5.0657 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1040 REMARK 3 T33: 0.0957 T12: 0.0104 REMARK 3 T13: -0.0022 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.2685 L22: 1.2116 REMARK 3 L33: 3.3820 L12: 0.6020 REMARK 3 L13: 1.0825 L23: 0.9570 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.2452 S13: 0.0201 REMARK 3 S21: 0.2599 S22: -0.0580 S23: -0.0196 REMARK 3 S31: 0.0075 S32: -0.0504 S33: -0.0156 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6231 30.7951 -9.4553 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.0955 REMARK 3 T33: 0.0819 T12: -0.0197 REMARK 3 T13: 0.0003 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8853 L22: 0.8364 REMARK 3 L33: 0.9958 L12: 0.0114 REMARK 3 L13: 0.0705 L23: 0.0617 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.1563 S13: 0.0074 REMARK 3 S21: 0.2139 S22: -0.0368 S23: 0.0248 REMARK 3 S31: 0.0146 S32: -0.0073 S33: 0.0196 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2324 16.2292 -9.0886 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.1186 REMARK 3 T33: 0.1077 T12: -0.0239 REMARK 3 T13: 0.0107 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.2877 L22: 1.6533 REMARK 3 L33: 0.6761 L12: -0.3972 REMARK 3 L13: 0.0433 L23: 0.5052 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: -0.2743 S13: -0.1024 REMARK 3 S21: 0.3312 S22: 0.0239 S23: 0.0838 REMARK 3 S31: 0.1423 S32: -0.0157 S33: 0.0435 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LAST REFINEMENT STEPS WERE PERFORMED BY REMARK 3 REFINING WITH TRANSLATION LIBERATION SCREW (TLS) THE MODEL WAS REMARK 3 REFINED WITH HYDROGENS IN RIDING POSITION. HYDROGENS WERE REMARK 3 OMITTED IN THE FINAL DEPOSITED MODEL. REMARK 4 REMARK 4 8CNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : / REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 51.061 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BROWN ORTHORHOMBIC RODS, APPEARED AFTER FEW WEEKS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLISATION WAS PERFORMED REMARK 280 ANAEROBICALLY AT 20 DEGREE CELSIUS USING THE SITTING DROP METHOD REMARK 280 ON 96-WELL MRC 2-DROP POLYSTYRENE CRYSTALLISATION PLATES REMARK 280 (SWISSCI) IN A COY TENT CONTAINING A N2/H2 (97:3%) ATMOSPHERE. REMARK 280 THE RESERVOIR CHAMBER WAS FILLED WITH 90 UL OF CRYSTALLISATION REMARK 280 CONDITION AND THE DROP WAS FORMED BY SPOTTING 0.55 UL PROTEIN REMARK 280 WITH 0.55 UL OF 20% (W/V) PEG 3,350 AND 200 MM MAGNESIUM REMARK 280 FORMATE. THE PROTEIN WAS CRYSTALLIZED AT 9.9 MG/ML IN 25 MM TRIS/ REMARK 280 HCL PH 7.6, 2 MM DITHIOTHREITOL AND 10% (V/V) GLYCEROL. REMARK 280 DENSITIES IN THE ELECTRON DENSITY MAP SUGGEST A CONTAMINATION REMARK 280 FROM ANOTHER CRYSTALLISATION CONDITION SPATIALLY CLOSE AND REMARK 280 CONTAINING 30% (V/V) 2-METHYL-2,4-PENTANEDIOL, 20 MM CALCIUM REMARK 280 CHLORIDE AND 100 MM SODIUM ACETATE, PH 4.6. CRYSTALS WERE CRYO- REMARK 280 PROTECTED BY SOAKING IN 20% (W/V) PEG 3,350 AND 200MM MAGNESIUM REMARK 280 FORMATE SUPPLEMENTED WITH 20% V/V GLYCEROL FOR A FEW SECONDS., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.77850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.77850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1173 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1224 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1333 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 402 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 9 27.20 -141.03 REMARK 500 ARG A 233 -167.17 -104.02 REMARK 500 SER A 266 -107.28 54.99 REMARK 500 ASN A 302 -40.82 72.41 REMARK 500 THR A 309 -169.00 -161.10 REMARK 500 PHE A 372 58.26 -96.25 REMARK 500 ALA A 428 145.47 -173.93 REMARK 500 TYR A 435 8.52 -151.19 REMARK 500 TYR A 489 -62.19 -142.43 REMARK 500 THR A 536 -104.00 -120.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1346 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1347 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1348 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1349 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 606 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 SF4 A 606 S2 109.3 REMARK 620 3 SF4 A 606 S3 119.2 102.7 REMARK 620 4 SF4 A 606 S4 113.0 107.3 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 606 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 SF4 A 606 S1 100.6 REMARK 620 3 SF4 A 606 S3 119.1 109.6 REMARK 620 4 SF4 A 606 S4 119.6 104.6 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 606 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A 606 S1 112.2 REMARK 620 3 SF4 A 606 S2 108.9 105.0 REMARK 620 4 SF4 A 606 S4 118.3 104.7 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 606 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 SF4 A 606 S1 107.0 REMARK 620 3 SF4 A 606 S2 117.3 104.3 REMARK 620 4 SF4 A 606 S3 116.6 109.0 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 188 OG REMARK 620 2 HOH A1186 O 132.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF3 A 614 FE7 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 243 NE2 REMARK 620 2 SF3 A 614 S2 139.7 REMARK 620 3 GLU A 267 OE2 90.2 97.6 REMARK 620 4 CYS A 455 SG 107.0 110.7 99.1 REMARK 620 5 HOH A 724 O 78.2 85.7 165.1 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 299 OE1 REMARK 620 2 HOH A 971 O 117.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF3 A 614 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 SF3 A 614 S1 131.9 REMARK 620 3 SF3 A 614 S3 120.9 107.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF3 A 614 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 SF3 A 614 S2 118.3 REMARK 620 3 SF3 A 614 S3 99.3 105.2 REMARK 620 4 GLU A 490 OE2 106.8 114.6 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF3 A 614 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 430 SG REMARK 620 2 SF3 A 614 S1 116.4 REMARK 620 3 SF3 A 614 S2 108.9 119.0 REMARK 620 4 SF3 A 614 S3 100.0 104.5 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1111 O REMARK 620 2 HOH A1330 O 86.1 REMARK 620 3 HOH A1342 O 63.8 89.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 992 O REMARK 620 2 HOH A1196 O 93.9 REMARK 620 3 HOH A1211 O 173.8 88.4 REMARK 620 4 HOH A1237 O 74.1 145.0 107.1 REMARK 620 5 HOH A1340 O 93.1 86.2 92.8 62.4 REMARK 620 N 1 2 3 4 DBREF 8CNR A 1 548 PDB 8CNR 8CNR 1 548 SEQRES 1 A 548 MET ARG PRO SER LYS MET PHE CYS TYR GLN CYS GLN GLU SEQRES 2 A 548 THR ALA LYS ASN THR GLY CYS THR ILE ILE GLY VAL CYS SEQRES 3 A 548 GLY LYS LYS ASP ASN VAL ALA ASN LEU GLN ASP LEU LEU SEQRES 4 A 548 VAL TYR THR VAL LYS GLY LEU ALA VAL VAL ARG GLU ASN SEQRES 5 A 548 LEU GLY TYR SER ASN ASP LYS THR ASP ARG TYR ILE VAL SEQRES 6 A 548 ASP ALA LEU PHE THR THR ILE THR ASN VAL ASN PHE ASP SEQRES 7 A 548 ASP LYS ASP ILE ILE GLU LYS ILE LYS GLU GLY LEU ALA SEQRES 8 A 548 LEU ARG GLU GLU ALA ALA SER LYS SER THR CYS PRO GLY SEQRES 9 A 548 CYS GLY GLY ASP LEU PRO ASP CYS ALA THR TRP THR ALA SEQRES 10 A 548 ASP SER ASP ASP GLU ILE ILE LYS LYS ALA ASN SER LEU SEQRES 11 A 548 GLU VAL SER VAL LEU ALA THR GLU ASN GLU ASP VAL ARG SEQRES 12 A 548 SER LEU ARG GLU LEU LEU THR TYR GLY VAL LYS GLY ILE SEQRES 13 A 548 ALA ALA TYR LEU HIS HIS ALA MET VAL LEU GLY TYR ASP SEQRES 14 A 548 ASN LYS ASP ILE HIS LYS PHE ILE ARG LYS ALA LEU VAL SEQRES 15 A 548 ALA THR THR ASP ASP SER LEU SER ALA ASP GLU LEU THR SEQRES 16 A 548 ALA LEU VAL LEU GLU CYS GLY LYS TYR ALA VAL ASP THR SEQRES 17 A 548 MET ALA LEU LEU ASP LYS ALA ASN THR GLU THR TYR GLY SEQRES 18 A 548 HIS PRO GLU ILE THR GLU VAL ASP ILE GLY VAL ARG ASN SEQRES 19 A 548 ASN PRO GLY ILE LEU ILE SER GLY HIS ASP LEU LYS ASP SEQRES 20 A 548 LEU GLU GLN LEU LEU GLU GLN THR LYS GLY THR GLY VAL SEQRES 21 A 548 ASP VAL TYR THR HIS SER GLU MET LEU PRO ALA HIS TYR SEQRES 22 A 548 TYR PRO ALA PHE LYS LYS TYR ASP HIS PHE VAL GLY ASN SEQRES 23 A 548 TYR GLY GLY SER TRP TRP ARG GLN LYS GLU GLU PHE GLU SEQRES 24 A 548 ALA PHE ASN GLY PRO ILE VAL MET THR THR ASN CYS LEU SEQRES 25 A 548 VAL PRO PRO ALA GLU SER TYR LYS ASP ARG ILE TYR THR SEQRES 26 A 548 THR GLY VAL VAL GLY PHE PRO GLY LEU LYS ARG ILE PRO SEQRES 27 A 548 GLU ASP GLU ASN GLY ASN LYS ASP PHE SER GLU VAL ILE SEQRES 28 A 548 GLU GLN ALA LYS LYS CYS ALA PRO PRO LYS GLN LEU GLU SEQRES 29 A 548 THR GLY LYS ILE VAL GLY GLY PHE ALA HIS ASN GLN VAL SEQRES 30 A 548 LEU ALA LEU ALA ASP LYS VAL VAL GLU ALA VAL LYS SER SEQRES 31 A 548 GLY ALA ILE ARG LYS PHE VAL VAL MET ALA GLY CYS ASP SEQRES 32 A 548 GLY ARG HIS PRO SER ARG GLU TYR TYR THR GLU PHE ALA SEQRES 33 A 548 LYS LYS LEU PRO ASN ASP THR VAL ILE LEU THR ALA GLY SEQRES 34 A 548 CYS ALA LYS TYR ARG TYR ASN LYS LEU GLY LEU GLY ASP SEQRES 35 A 548 ILE GLY GLY ILE PRO ARG VAL LEU ASP ALA GLY GLN CYS SEQRES 36 A 548 ASN ASP CYS TYR SER LEU ALA VAL ILE ALA LEU LYS LEU SEQRES 37 A 548 LYS GLU VAL PHE GLU LEU ASP ASP ILE ASN ASP LEU PRO SEQRES 38 A 548 ILE ALA PHE ASN VAL ALA TRP TYR GLU GLN LYS ALA VAL SEQRES 39 A 548 ALA VAL LEU LEU ALA LEU LEU TYR LEU GLY VAL LYS ASP SEQRES 40 A 548 ILE VAL LEU GLY PRO THR LEU PRO ALA PHE LEU SER PRO SEQRES 41 A 548 ASN VAL ALA LYS VAL LEU VAL GLU LYS PHE GLY ILE SER SEQRES 42 A 548 GLY ILE THR THR VAL ASP GLU ASP ILE GLU ARG LEU ILE SEQRES 43 A 548 ASN LYS HET MG A 601 1 HET MG A 602 1 HET ACT A 603 4 HET MG A 604 1 HET MG A 605 1 HET SF4 A 606 8 HET ETX A 607 6 HET FMT A 608 3 HET EDO A 609 4 HET FMT A 610 3 HET GOL A 611 6 HET FMT A 612 3 HET GOL A 613 6 HET SF3 A 614 7 HET MRD A 615 8 HET GOL A 616 6 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ETX 2-ETHOXYETHANOL HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SF3 FE4-S3 CLUSTER HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 4(MG 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 7 SF4 FE4 S4 FORMUL 8 ETX C4 H10 O2 FORMUL 9 FMT 3(C H2 O2) FORMUL 10 EDO C2 H6 O2 FORMUL 12 GOL 3(C3 H8 O3) FORMUL 15 SF3 FE4 S3 FORMUL 16 MRD C6 H14 O2 FORMUL 18 HOH *649(H2 O) HELIX 1 AA1 THR A 14 THR A 18 5 5 HELIX 2 AA2 LYS A 29 GLY A 54 1 26 HELIX 3 AA3 ASN A 57 THR A 71 1 15 HELIX 4 AA4 ASP A 78 LYS A 99 1 22 HELIX 5 AA5 PRO A 110 THR A 114 5 5 HELIX 6 AA6 SER A 119 ASN A 128 1 10 HELIX 7 AA7 SER A 129 THR A 137 5 9 HELIX 8 AA8 ASN A 139 LEU A 166 1 28 HELIX 9 AA9 ASN A 170 THR A 184 1 15 HELIX 10 AB1 SER A 190 GLY A 221 1 32 HELIX 11 AB2 ASP A 244 LYS A 256 1 13 HELIX 12 AB3 SER A 266 TYR A 273 5 8 HELIX 13 AB4 TYR A 274 LYS A 279 1 6 HELIX 14 AB5 SER A 290 TRP A 292 5 3 HELIX 15 AB6 ARG A 293 ASN A 302 1 10 HELIX 16 AB7 ALA A 316 ASP A 321 5 6 HELIX 17 AB8 PHE A 347 LYS A 356 1 10 HELIX 18 AB9 ALA A 373 LEU A 380 1 8 HELIX 19 AC1 LEU A 380 SER A 390 1 11 HELIX 20 AC2 HIS A 406 SER A 408 5 3 HELIX 21 AC3 ARG A 409 LEU A 419 1 11 HELIX 22 AC4 GLY A 429 TYR A 435 5 7 HELIX 23 AC5 GLN A 454 ASN A 456 5 3 HELIX 24 AC6 ASP A 457 PHE A 472 1 16 HELIX 25 AC7 ASP A 476 LEU A 480 5 5 HELIX 26 AC8 GLU A 490 LEU A 503 1 14 HELIX 27 AC9 SER A 519 GLY A 531 1 13 HELIX 28 AD1 THR A 537 ILE A 546 1 10 SHEET 1 AA1 2 THR A 226 ASP A 229 0 SHEET 2 AA1 2 LYS A 367 GLY A 370 -1 O ILE A 368 N VAL A 228 SHEET 1 AA2 6 PHE A 283 ASN A 286 0 SHEET 2 AA2 6 ASP A 261 THR A 264 1 N THR A 264 O GLY A 285 SHEET 3 AA2 6 GLY A 237 SER A 241 1 N ILE A 240 O TYR A 263 SHEET 4 AA2 6 ILE A 305 MET A 307 1 O VAL A 306 N SER A 241 SHEET 5 AA2 6 ILE A 323 THR A 325 1 O TYR A 324 N MET A 307 SHEET 6 AA2 6 LYS A 335 ARG A 336 1 O LYS A 335 N THR A 325 SHEET 1 AA3 5 VAL A 449 ASP A 451 0 SHEET 2 AA3 5 THR A 423 THR A 427 1 N ILE A 425 O LEU A 450 SHEET 3 AA3 5 LYS A 395 VAL A 398 1 N VAL A 397 O VAL A 424 SHEET 4 AA3 5 ILE A 482 ALA A 487 1 O ALA A 483 N VAL A 398 SHEET 5 AA3 5 VAL A 509 GLY A 511 1 O VAL A 509 N PHE A 484 SHEET 1 AA4 2 ASP A 442 ILE A 443 0 SHEET 2 AA4 2 ILE A 446 PRO A 447 -1 O ILE A 446 N ILE A 443 LINK SG CYS A 8 FE1 SF4 A 606 1555 1555 2.29 LINK SG CYS A 11 FE2 SF4 A 606 1555 1555 2.25 LINK SG CYS A 20 FE3 SF4 A 606 1555 1555 2.35 LINK SG CYS A 26 FE4 SF4 A 606 1555 1555 2.31 LINK OG SER A 188 MG MG A 601 1555 1555 2.68 LINK NE2 HIS A 243 FE7 SF3 A 614 1555 1555 2.21 LINK OE2 GLU A 267 FE7 SF3 A 614 1555 1555 2.19 LINK OE1AGLU A 299 MG A MG A 602 1555 1555 2.85 LINK SG CYS A 311 FE3 SF3 A 614 1555 1555 2.26 LINK SG CYS A 402 FE4 SF3 A 614 1555 1555 2.37 LINK SG CYS A 430 FE1 SF3 A 614 1555 1555 2.33 LINK SG CYS A 455 FE7 SF3 A 614 1555 1555 2.36 LINK OE2 GLU A 490 FE4 SF3 A 614 1555 1555 2.07 LINK MG MG A 601 O HOH A1186 1555 1555 2.41 LINK MG A MG A 602 O HOH A 971 1555 1555 2.86 LINK MG MG A 604 O HOH A1111 1555 1555 2.96 LINK MG MG A 604 O HOH A1330 1555 1555 2.10 LINK MG MG A 604 O HOH A1342 1555 1555 2.46 LINK MG MG A 605 O HOH A 992 1555 2565 2.32 LINK MG MG A 605 O HOH A1196 1555 2565 2.17 LINK MG MG A 605 O HOH A1211 1555 1555 2.32 LINK MG MG A 605 O HOH A1237 1555 1555 2.31 LINK MG MG A 605 O HOH A1340 1555 1555 2.31 LINK FE7 SF3 A 614 O HOH A 724 1555 1555 2.41 CISPEP 1 ASN A 310 CYS A 311 0 0.24 CISPEP 2 GLY A 511 PRO A 512 0 10.18 CRYST1 97.557 102.454 58.896 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016979 0.00000