HEADER CONTRACTILE PROTEIN 28-FEB-23 8COG TITLE HUMAN ARGINYLATED BETA-ACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, CYTOPLASMIC 1, N-TERMINALLY PROCESSED; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACTB; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS ACTIN, METHYLATED, FILAMENT, CONTRACTILE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR C.S.PINTO,S.E.BAKKER,A.SUCHENKO,H.HUSSAIN,T.HATANO,K.SAMPATH, AUTHOR 2 K.CHINTHALAPUDI,M.MISHIMA,M.BALASUBRAMANIAN REVDAT 1 06-MAR-24 8COG 0 JRNL AUTH C.S.PINTO,S.E.BAKKER,A.SUCHENKO,H.HUSSAIN,T.HATANO, JRNL AUTH 2 K.SAMPATH,K.CHINTHALAPUDI,M.MISHIMA,M.BALASUBRAMANIAN JRNL TITL STRUCTURE AND PHYSIOLOGICAL INVESTIGATION OF HUMAN JRNL TITL 2 ARGINYLATED BETA-ACTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, RELION, COOT, REFMAC REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.499 REMARK 3 NUMBER OF PARTICLES : 42701 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: RELION 3.09 WAS USED THROUGHOUT USING HELICAL REMARK 3 RECONSTRUCTION. REMARK 4 REMARK 4 8COG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292123797. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : POLYMERISED ARGINYLATED ACTIN REMARK 245 WITH BOUND ADP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE F 374 C PHE F 374 O -0.368 REMARK 500 PHE F 374 C PHE F 374 OXT 0.318 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP F 10 61.01 -101.37 REMARK 500 HIC F 72 32.48 76.95 REMARK 500 ALA F 180 -165.10 -161.26 REMARK 500 ALA F 330 63.22 38.60 REMARK 500 GLU F 333 30.12 -92.51 REMARK 500 THR F 350 -7.17 79.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-16776 RELATED DB: EMDB REMARK 900 HUMAN ARGINYLATED BETA-ACTIN DBREF 8COG F 1 374 UNP P60709 ACTB_HUMAN 2 375 SEQADV 8COG ARG F 1 UNP P60709 ASP 2 CONFLICT SEQRES 1 F 374 ARG ASP ASP ILE ALA ALA LEU VAL VAL ASP ASN GLY SER SEQRES 2 F 374 GLY MET CYS LYS ALA GLY PHE ALA GLY ASP ASP ALA PRO SEQRES 3 F 374 ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG HIS SEQRES 4 F 374 GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER TYR SEQRES 5 F 374 VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU THR SEQRES 6 F 374 LEU LYS TYR PRO ILE GLU HIC GLY ILE VAL THR ASN TRP SEQRES 7 F 374 ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR ASN SEQRES 8 F 374 GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO VAL LEU LEU SEQRES 9 F 374 THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU LYS SEQRES 10 F 374 MET THR GLN ILE MET PHE GLU THR PHE ASN THR PRO ALA SEQRES 11 F 374 MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR ALA SEQRES 12 F 374 SER GLY ARG THR THR GLY ILE VAL MET ASP SER GLY ASP SEQRES 13 F 374 GLY VAL THR HIS THR VAL PRO ILE TYR GLU GLY TYR ALA SEQRES 14 F 374 LEU PRO HIS ALA ILE LEU ARG LEU ASP LEU ALA GLY ARG SEQRES 15 F 374 ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU ARG SEQRES 16 F 374 GLY TYR SER PHE THR THR THR ALA GLU ARG GLU ILE VAL SEQRES 17 F 374 ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU ASP SEQRES 18 F 374 PHE GLU GLN GLU MET ALA THR ALA ALA SER SER SER SER SEQRES 19 F 374 LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL ILE SEQRES 20 F 374 THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU ALA LEU SEQRES 21 F 374 PHE GLN PRO SER PHE LEU GLY MET GLU SER CYS GLY ILE SEQRES 22 F 374 HIS GLU THR THR PHE ASN SER ILE MET LYS CYS ASP VAL SEQRES 23 F 374 ASP ILE ARG LYS ASP LEU TYR ALA ASN THR VAL LEU SER SEQRES 24 F 374 GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG MET SEQRES 25 F 374 GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET LYS SEQRES 26 F 374 ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER VAL SEQRES 27 F 374 TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR PHE SEQRES 28 F 374 GLN GLN MET TRP ILE SER LYS GLN GLU TYR ASP GLU SER SEQRES 29 F 374 GLY PRO SER ILE VAL HIS ARG LYS CYS PHE MODRES 8COG HIC F 72 HIS MODIFIED RESIDUE HET HIC F 72 11 HET ADP F 401 27 HET MG F 402 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 HIC C7 H11 N3 O2 FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ HELIX 1 AA1 GLY F 54 LYS F 60 1 7 HELIX 2 AA2 ASN F 77 ASN F 91 1 15 HELIX 3 AA3 PRO F 111 THR F 125 1 15 HELIX 4 AA4 GLN F 136 GLY F 145 1 10 HELIX 5 AA5 PRO F 171 ILE F 174 5 4 HELIX 6 AA6 ALA F 180 THR F 193 1 14 HELIX 7 AA7 THR F 201 CYS F 216 1 16 HELIX 8 AA8 ASP F 221 SER F 232 1 12 HELIX 9 AA9 GLY F 250 ARG F 255 5 6 HELIX 10 AB1 CYS F 256 GLN F 262 5 7 HELIX 11 AB2 GLY F 272 MET F 282 1 11 HELIX 12 AB3 ASP F 285 ALA F 294 1 10 HELIX 13 AB4 GLY F 307 ALA F 320 1 14 HELIX 14 AB5 GLU F 333 LYS F 335 5 3 HELIX 15 AB6 TYR F 336 LEU F 348 1 13 HELIX 16 AB7 LYS F 358 GLY F 365 1 8 HELIX 17 AB8 ILE F 368 CYS F 373 1 6 SHEET 1 AA1 5 CYS F 16 LYS F 17 0 SHEET 2 AA1 5 LEU F 7 ASN F 11 -1 N ASP F 10 O LYS F 17 SHEET 3 AA1 5 VAL F 102 GLU F 106 1 O LEU F 103 N VAL F 9 SHEET 4 AA1 5 ALA F 130 ILE F 135 1 O TYR F 132 N LEU F 104 SHEET 5 AA1 5 ILE F 356 SER F 357 -1 O ILE F 356 N MET F 131 SHEET 1 AA2 3 TYR F 52 VAL F 53 0 SHEET 2 AA2 3 VAL F 34 PRO F 37 -1 N GLY F 35 O TYR F 52 SHEET 3 AA2 3 LEU F 64 LYS F 67 -1 O THR F 65 N ARG F 36 SHEET 1 AA3 2 ILE F 70 GLU F 71 0 SHEET 2 AA3 2 ILE F 74 VAL F 75 -1 O ILE F 74 N GLU F 71 SHEET 1 AA4 3 TYR F 168 ALA F 169 0 SHEET 2 AA4 3 THR F 159 TYR F 165 -1 N TYR F 165 O TYR F 168 SHEET 3 AA4 3 LEU F 175 LEU F 177 -1 O LEU F 177 N THR F 159 SHEET 1 AA5 5 TYR F 168 ALA F 169 0 SHEET 2 AA5 5 THR F 159 TYR F 165 -1 N TYR F 165 O TYR F 168 SHEET 3 AA5 5 GLY F 149 SER F 154 -1 N GLY F 149 O ILE F 164 SHEET 4 AA5 5 ASN F 295 SER F 299 1 O VAL F 297 N MET F 152 SHEET 5 AA5 5 LYS F 327 ILE F 328 1 O LYS F 327 N THR F 296 SHEET 1 AA6 2 LYS F 237 GLU F 240 0 SHEET 2 AA6 2 VAL F 246 ILE F 249 -1 O ILE F 249 N LYS F 237 SSBOND 1 CYS F 216 CYS F 256 1555 1555 2.10 LINK C GLU F 71 N HIC F 72 1555 1555 1.33 LINK C HIC F 72 N GLY F 73 1555 1555 1.33 LINK O2B ADP F 401 MG MG F 402 1555 1555 2.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000