HEADER OXIDOREDUCTASE 28-FEB-23 8CON TITLE CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE FROM ARABIDOPSIS THALIANA TITLE 2 IN COMPLEX WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE CLASS-P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATADH; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ADH1, ADH, AT1G77120, F22K20.19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS OXIDOREDUCTASE, ALCOHOL DEHYDROGENASE, ZN-BINDING DEHYDROGENASE, KEYWDS 2 METALLOPROTEIN, ROSSMAN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR S.FERMANI,S.FANTI,G.CARLONI,G.FALINI,M.MELONI,M.ZAFFAGNINI REVDAT 2 29-MAY-24 8CON 1 JRNL REVDAT 1 21-FEB-24 8CON 0 JRNL AUTH M.MELONI,J.ROSSI,S.FANTI,G.CARLONI,D.TEDESCO,P.TREFFON, JRNL AUTH 2 L.PICCININI,G.FALINI,P.TROST,E.VIERLING,F.LICAUSI, JRNL AUTH 3 B.GIUNTOLI,F.MUSIANI,S.FERMANI,M.ZAFFAGNINI JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF ARABIDOPSIS JRNL TITL 2 ALCOHOL DEHYDROGENASES REVEALS DISTINCT FUNCTIONAL JRNL TITL 3 PROPERTIES BUT SIMILAR REDOX SENSITIVITY. JRNL REF PLANT J. V. 118 1054 2024 JRNL REFN ESSN 1365-313X JRNL PMID 38308388 JRNL DOI 10.1111/TPJ.16651 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2778 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2707 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 182.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BIPYRAMIDAL OR OR RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NAOH PH 7.0-8.0, 2% V/V REMARK 280 PEG 400 AND 2.0 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.71767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.43533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.43533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.71767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 619 O HOH A 717 1.85 REMARK 500 O HOH A 718 O HOH A 727 1.88 REMARK 500 O HOH A 695 O HOH A 736 1.95 REMARK 500 O HOH A 680 O HOH A 685 2.03 REMARK 500 NE2 GLN A 276 O HOH A 501 2.04 REMARK 500 O HOH A 706 O HOH A 712 2.04 REMARK 500 O4 SO4 A 408 O HOH A 502 2.08 REMARK 500 O HOH A 729 O HOH A 734 2.09 REMARK 500 O ASP A 302 O HOH A 503 2.12 REMARK 500 O4 SO4 A 407 O HOH A 504 2.17 REMARK 500 O HOH A 607 O HOH A 739 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 556 O HOH A 670 4555 2.02 REMARK 500 O HOH A 506 O HOH A 530 6555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 95 5.46 -68.38 REMARK 500 LEU A 144 19.01 59.20 REMARK 500 CYS A 177 -104.48 -152.03 REMARK 500 LYS A 300 -163.77 -104.25 REMARK 500 GLU A 314 43.88 71.83 REMARK 500 GLU A 369 -15.87 70.02 REMARK 500 ILE A 371 -72.77 -82.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 HIS A 69 NE2 105.4 REMARK 620 3 GLU A 70 OE2 107.5 114.2 REMARK 620 4 CYS A 177 SG 118.4 109.0 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 CYS A 102 SG 113.3 REMARK 620 3 CYS A 105 SG 115.6 106.9 REMARK 620 4 CYS A 113 SG 97.6 118.9 104.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CO4 RELATED DB: PDB DBREF 8CON A 1 379 UNP P06525 ADH1_ARATH 1 379 SEQRES 1 A 379 MET SER THR THR GLY GLN ILE ILE ARG CYS LYS ALA ALA SEQRES 2 A 379 VAL ALA TRP GLU ALA GLY LYS PRO LEU VAL ILE GLU GLU SEQRES 3 A 379 VAL GLU VAL ALA PRO PRO GLN LYS HIS GLU VAL ARG ILE SEQRES 4 A 379 LYS ILE LEU PHE THR SER LEU CYS HIS THR ASP VAL TYR SEQRES 5 A 379 PHE TRP GLU ALA LYS GLY GLN THR PRO LEU PHE PRO ARG SEQRES 6 A 379 ILE PHE GLY HIS GLU ALA GLY GLY ILE VAL GLU SER VAL SEQRES 7 A 379 GLY GLU GLY VAL THR ASP LEU GLN PRO GLY ASP HIS VAL SEQRES 8 A 379 LEU PRO ILE PHE THR GLY GLU CYS GLY GLU CYS ARG HIS SEQRES 9 A 379 CYS HIS SER GLU GLU SER ASN MET CYS ASP LEU LEU ARG SEQRES 10 A 379 ILE ASN THR GLU ARG GLY GLY MET ILE HIS ASP GLY GLU SEQRES 11 A 379 SER ARG PHE SER ILE ASN GLY LYS PRO ILE TYR HIS PHE SEQRES 12 A 379 LEU GLY THR SER THR PHE SER GLU TYR THR VAL VAL HIS SEQRES 13 A 379 SER GLY GLN VAL ALA LYS ILE ASN PRO ASP ALA PRO LEU SEQRES 14 A 379 ASP LYS VAL CYS ILE VAL SER CYS GLY LEU SER THR GLY SEQRES 15 A 379 LEU GLY ALA THR LEU ASN VAL ALA LYS PRO LYS LYS GLY SEQRES 16 A 379 GLN SER VAL ALA ILE PHE GLY LEU GLY ALA VAL GLY LEU SEQRES 17 A 379 GLY ALA ALA GLU GLY ALA ARG ILE ALA GLY ALA SER ARG SEQRES 18 A 379 ILE ILE GLY VAL ASP PHE ASN SER LYS ARG PHE ASP GLN SEQRES 19 A 379 ALA LYS GLU PHE GLY VAL THR GLU CYS VAL ASN PRO LYS SEQRES 20 A 379 ASP HIS ASP LYS PRO ILE GLN GLN VAL ILE ALA GLU MET SEQRES 21 A 379 THR ASP GLY GLY VAL ASP ARG SER VAL GLU CYS THR GLY SEQRES 22 A 379 SER VAL GLN ALA MET ILE GLN ALA PHE GLU CYS VAL HIS SEQRES 23 A 379 ASP GLY TRP GLY VAL ALA VAL LEU VAL GLY VAL PRO SER SEQRES 24 A 379 LYS ASP ASP ALA PHE LYS THR HIS PRO MET ASN PHE LEU SEQRES 25 A 379 ASN GLU ARG THR LEU LYS GLY THR PHE PHE GLY ASN TYR SEQRES 26 A 379 LYS PRO LYS THR ASP ILE PRO GLY VAL VAL GLU LYS TYR SEQRES 27 A 379 MET ASN LYS GLU LEU GLU LEU GLU LYS PHE ILE THR HIS SEQRES 28 A 379 THR VAL PRO PHE SER GLU ILE ASN LYS ALA PHE ASP TYR SEQRES 29 A 379 MET LEU LYS GLY GLU SER ILE ARG CYS ILE ILE THR MET SEQRES 30 A 379 GLY ALA HET ZN A 401 1 HET ZN A 402 1 HET NAI A 403 44 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET PG4 A 409 13 HET PG4 A 410 13 HET PG4 A 411 13 HET PEG A 412 7 HET PEG A 413 7 HET PEG A 414 7 HET PEG A 415 7 HET PEG A 416 7 HET PEG A 417 7 HET EDO A 418 4 HET EDO A 419 4 HETNAM ZN ZINC ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN NAI NADH HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 NAI C21 H29 N7 O14 P2 FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 PG4 3(C8 H18 O5) FORMUL 13 PEG 6(C4 H10 O3) FORMUL 19 EDO 2(C2 H6 O2) FORMUL 21 HOH *249(H2 O) HELIX 1 AA1 CYS A 47 ALA A 56 1 10 HELIX 2 AA2 PRO A 168 CYS A 173 1 6 HELIX 3 AA3 CYS A 177 ASN A 188 1 12 HELIX 4 AA4 GLY A 204 ALA A 217 1 14 HELIX 5 AA5 LYS A 230 GLU A 237 1 8 HELIX 6 AA6 ASN A 245 HIS A 249 5 5 HELIX 7 AA7 PRO A 252 ASP A 262 1 11 HELIX 8 AA8 SER A 274 CYS A 284 1 11 HELIX 9 AA9 PRO A 308 ASN A 313 1 6 HELIX 10 AB1 PHE A 321 TYR A 325 5 5 HELIX 11 AB2 ASP A 330 ASN A 340 1 11 HELIX 12 AB3 LEU A 345 LYS A 347 5 3 HELIX 13 AB4 GLU A 357 GLY A 368 1 12 SHEET 1 AA1 4 ILE A 8 VAL A 14 0 SHEET 2 AA1 4 VAL A 23 VAL A 29 -1 O VAL A 27 N CYS A 10 SHEET 3 AA1 4 PHE A 133 ILE A 135 -1 O SER A 134 N GLU A 28 SHEET 4 AA1 4 LYS A 138 PRO A 139 -1 O LYS A 138 N ILE A 135 SHEET 1 AA2 5 TYR A 152 HIS A 156 0 SHEET 2 AA2 5 GLU A 36 SER A 45 -1 N ILE A 39 O THR A 153 SHEET 3 AA2 5 GLU A 70 VAL A 78 -1 O ILE A 74 N LYS A 40 SHEET 4 AA2 5 HIS A 90 PRO A 93 -1 O VAL A 91 N GLY A 73 SHEET 5 AA2 5 VAL A 160 LYS A 162 -1 O ALA A 161 N LEU A 92 SHEET 1 AA3 4 TYR A 152 HIS A 156 0 SHEET 2 AA3 4 GLU A 36 SER A 45 -1 N ILE A 39 O THR A 153 SHEET 3 AA3 4 ARG A 372 THR A 376 -1 O ILE A 375 N THR A 44 SHEET 4 AA3 4 ILE A 349 PRO A 354 1 N HIS A 351 O ILE A 374 SHEET 1 AA4 6 GLU A 242 VAL A 244 0 SHEET 2 AA4 6 ARG A 221 VAL A 225 1 N GLY A 224 O GLU A 242 SHEET 3 AA4 6 SER A 197 PHE A 201 1 N ILE A 200 O VAL A 225 SHEET 4 AA4 6 ARG A 267 GLU A 270 1 O VAL A 269 N PHE A 201 SHEET 5 AA4 6 VAL A 291 LEU A 294 1 O VAL A 293 N GLU A 270 SHEET 6 AA4 6 THR A 316 GLY A 319 1 O LYS A 318 N ALA A 292 LINK NZ ALYS A 360 O1 PEG A 417 1555 1555 1.30 LINK SG CYS A 47 ZN ZN A 401 1555 1555 2.26 LINK NE2 HIS A 69 ZN ZN A 401 1555 1555 2.24 LINK OE2 GLU A 70 ZN ZN A 401 1555 1555 2.00 LINK SG CYS A 99 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 102 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 105 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 113 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 177 ZN ZN A 401 1555 1555 2.31 CISPEP 1 PHE A 63 PRO A 64 0 -1.99 CRYST1 63.405 63.405 182.153 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015772 0.009106 0.000000 0.00000 SCALE2 0.000000 0.018212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000