HEADER TRANSFERASE 01-MAR-23 8CP3 TITLE APO-LARE IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD_SYNTHASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LARE,ATP-DEPENDENT SACRIFICIAL SULFUR TRANSFERASE LARE, COMPND 5 NAD_SYNTHASE DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS S2; SOURCE 3 ORGANISM_TAXID: 267377; SOURCE 4 GENE: MMP1239; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS LAR, SULFUR TRANSFERASE, LARE, AMP, 4FE-4S, THIOLATION, [FE-S] KEYWDS 2 CLUSTER, IRON-SULFUR CLUSTER, PP-LOOP, ATP PYROPHOSPHATASE, LACTATE, KEYWDS 3 LACTATE RACEMIZATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZECCHIN,L.PECQUEUR,B.GOLINELLI-PIMPANEAU REVDAT 2 07-FEB-24 8CP3 1 JRNL REVDAT 1 31-JAN-24 8CP3 0 JRNL AUTH P.ZECCHIN,L.PECQUEUR,J.OLTMANNS,C.VELOURS,V.SCHUNEMANN, JRNL AUTH 2 M.FONTECAVE,B.GOLINELLI-PIMPANEAU JRNL TITL STRUCTURE-BASED INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 [4FE-4S]-DEPENDENT SULFUR INSERTASE LARE. JRNL REF PROTEIN SCI. V. 33 E4874 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38100250 JRNL DOI 10.1002/PRO.4874 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1600 - 5.3800 1.00 2707 142 0.2378 0.2456 REMARK 3 2 5.3800 - 4.2700 1.00 2605 137 0.2038 0.2133 REMARK 3 3 4.2700 - 3.7300 1.00 2608 138 0.2072 0.2101 REMARK 3 4 3.7300 - 3.3900 1.00 2574 135 0.2163 0.2617 REMARK 3 5 3.3900 - 3.1500 1.00 2582 136 0.2530 0.3000 REMARK 3 6 3.1500 - 2.9600 1.00 2571 135 0.2682 0.2888 REMARK 3 7 2.9600 - 2.8100 1.00 2566 135 0.2447 0.2843 REMARK 3 8 2.8100 - 2.6900 1.00 2573 136 0.2521 0.3273 REMARK 3 9 2.6900 - 2.5900 1.00 2551 134 0.3051 0.3394 REMARK 3 10 2.5900 - 2.5000 1.00 2562 135 0.3573 0.3505 REMARK 3 11 2.5000 - 2.4200 1.00 2557 135 0.2982 0.3033 REMARK 3 12 2.4200 - 2.3500 0.96 2441 129 0.3131 0.3801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.374 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.986 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3878 REMARK 3 ANGLE : 1.095 5248 REMARK 3 CHIRALITY : 0.060 621 REMARK 3 PLANARITY : 0.008 649 REMARK 3 DIHEDRAL : 14.960 1397 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.403 10.003 12.524 REMARK 3 T TENSOR REMARK 3 T11: 0.6772 T22: 0.6985 REMARK 3 T33: 0.6309 T12: 0.0021 REMARK 3 T13: 0.0025 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.2761 L22: 3.2403 REMARK 3 L33: 3.2563 L12: -0.2169 REMARK 3 L13: -0.8775 L23: 1.2478 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.1118 S13: 0.1766 REMARK 3 S21: 0.1321 S22: 0.0783 S23: -0.2035 REMARK 3 S31: -0.1956 S32: 0.3977 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 184:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.609 26.322 32.008 REMARK 3 T TENSOR REMARK 3 T11: 1.3511 T22: 1.7367 REMARK 3 T33: 1.4295 T12: 0.0652 REMARK 3 T13: -0.0891 T23: -0.1866 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.3766 REMARK 3 L33: 0.4039 L12: 0.3172 REMARK 3 L13: -0.3675 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.5228 S12: -0.4135 S13: 1.1774 REMARK 3 S21: 0.0689 S22: 0.5220 S23: -0.6671 REMARK 3 S31: -0.1787 S32: -0.3332 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.222 9.677 13.116 REMARK 3 T TENSOR REMARK 3 T11: 0.7013 T22: 0.7470 REMARK 3 T33: 0.7732 T12: -0.0231 REMARK 3 T13: -0.0628 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 2.5173 L22: 3.4148 REMARK 3 L33: 2.6401 L12: 0.8610 REMARK 3 L13: 0.3499 L23: 0.9803 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: -0.2847 S13: -0.1930 REMARK 3 S21: 0.3275 S22: -0.0899 S23: -0.1459 REMARK 3 S31: 0.1286 S32: -0.2564 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 183:259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.342 21.100 44.512 REMARK 3 T TENSOR REMARK 3 T11: 1.7487 T22: 1.9956 REMARK 3 T33: 1.3016 T12: -0.1415 REMARK 3 T13: 0.1374 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.3083 L22: 0.3951 REMARK 3 L33: 0.0712 L12: -0.3472 REMARK 3 L13: 0.0511 L23: -0.0937 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: -0.7365 S13: -0.2648 REMARK 3 S21: 1.9006 S22: 0.2954 S23: 0.2551 REMARK 3 S31: 0.5640 S32: 0.2574 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 3 through 84 or REMARK 3 (resid 85 through 88 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 91 through 94 or (resid 95 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 96 through 169 or REMARK 3 (resid 170 through 172 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 173 through 174 or (resid 184 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 185 or resid 187 REMARK 3 or (resid 188 through 190 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 191 through 193 or (resid 194 REMARK 3 through 195 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 196 or (resid 197 through 199 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 200 or (resid 201 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 202 or (resid 203 through 208 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 209 or resid 211 REMARK 3 or (resid 212 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 214 through 222 or (resid 223 through 240 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 241 or (resid REMARK 3 242 through 245 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 246 through 257 or resid 393)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 3 through 92 or REMARK 3 (resid 93 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 94 REMARK 3 through 171 or (resid 172 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 173 through 174 or resid 184 REMARK 3 through 229 or (resid 230 through 240 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 241 through 248 or REMARK 3 resid 251 through 252 or (resid 253 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 254 through 257 or REMARK 3 resid 394)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : U20 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MARS, 2021 REMARK 200 DATA SCALING SOFTWARE : XDS MARS, 2021 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32562 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 48.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 98.39 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP MARS, 2021 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 2 % PEG 400, REMARK 280 0.1 M HEPES PH 7.5, 5 MM AMP-PNP., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.40500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.80305 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.54667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.40500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.80305 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.54667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.40500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.80305 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.54667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.40500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.80305 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.54667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.40500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.80305 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.54667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.40500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.80305 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.54667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.60609 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 129.09333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.60609 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 129.09333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.60609 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 129.09333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.60609 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 129.09333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.60609 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 129.09333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.60609 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 129.09333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 PRO A -9 REMARK 465 MET A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ALA A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 ILE A 179 REMARK 465 LEU A 180 REMARK 465 SER A 181 REMARK 465 ALA A 182 REMARK 465 PRO A 183 REMARK 465 GLU A 249 REMARK 465 LYS A 250 REMARK 465 LYS A 258 REMARK 465 GLY A 259 REMARK 465 SER A 260 REMARK 465 GLY B -10 REMARK 465 PRO B -9 REMARK 465 MET B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 LEU B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 SER B 89 REMARK 465 LYS B 90 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 LEU B 180 REMARK 465 SER B 181 REMARK 465 ALA B 182 REMARK 465 LYS B 186 REMARK 465 ARG B 210 REMARK 465 TYR B 213 REMARK 465 SER B 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 SER A 89 OG REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 MET A 175 CG SD CE REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 204 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 TYR A 213 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 ILE A 217 CG1 CG2 CD1 REMARK 470 ASN A 225 CG OD1 ND2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ILE A 230 CG1 CG2 CD1 REMARK 470 PHE A 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 235 OG REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 240 CG OD1 ND2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 PHE A 248 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 LEU A 255 CG CD1 CD2 REMARK 470 ASN B 85 CG OD1 ND2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ILE B 87 CG1 CG2 CD1 REMARK 470 THR B 88 OG1 CG2 REMARK 470 ASP B 91 CG OD1 OD2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 THR B 177 OG1 CG2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 179 CG1 CG2 CD1 REMARK 470 PRO B 183 CG CD REMARK 470 ILE B 184 CG1 CG2 CD1 REMARK 470 ASN B 188 CG OD1 ND2 REMARK 470 MET B 189 CG SD CE REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 PHE B 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 199 CG1 CG2 CD1 REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 PHE B 203 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 205 CG1 CG2 CD1 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 SER B 207 OG REMARK 470 TYR B 208 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 214 CG CD1 CD2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 ILE B 217 CG1 CG2 CD1 REMARK 470 THR B 223 OG1 CG2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 ASN B 225 CG OD1 ND2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 SER B 227 OG REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 PHE B 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 232 CG OD1 OD2 REMARK 470 ASN B 233 CG OD1 ND2 REMARK 470 ASP B 234 CG OD1 OD2 REMARK 470 SER B 235 OG REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 239 CG1 CG2 CD1 REMARK 470 ASN B 240 CG OD1 ND2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 LEU B 243 CG CD1 CD2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 PHE B 248 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LEU B 255 CG CD1 CD2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1A ANP B 301 O HOH B 401 2.05 REMARK 500 O ASP A 91 N ARG A 95 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 207 -162.63 -78.03 REMARK 500 LEU B 92 95.36 -63.15 REMARK 500 GLU B 93 -10.91 65.64 REMARK 500 LEU B 107 -54.22 84.29 REMARK 500 THR B 173 -103.42 50.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CNZ RELATED DB: PDB REMARK 900 MMLARE-[4FE-4S] REMARK 900 RELATED ID: 8CP4 RELATED DB: PDB REMARK 900 MMLARE-[4FE-4S] IN COMPLEX WITH AMP DBREF 8CP3 A 1 258 UNP Q6LXV7 Q6LXV7_METMP 1 258 DBREF 8CP3 B 1 258 UNP Q6LXV7 Q6LXV7_METMP 1 258 SEQADV 8CP3 GLY A -10 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PRO A -9 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 MET A -8 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 LEU A -7 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLU A -6 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 VAL A -5 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 LEU A -4 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PHE A -3 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLN A -2 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLY A -1 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PRO A 0 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLY A 259 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 SER A 260 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLY B -10 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PRO B -9 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 MET B -8 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 LEU B -7 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLU B -6 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 VAL B -5 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 LEU B -4 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PHE B -3 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLN B -2 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLY B -1 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 PRO B 0 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 GLY B 259 UNP Q6LXV7 EXPRESSION TAG SEQADV 8CP3 SER B 260 UNP Q6LXV7 EXPRESSION TAG SEQRES 1 A 271 GLY PRO MET LEU GLU VAL LEU PHE GLN GLY PRO MET ILE SEQRES 2 A 271 ILE MET GLU LYS GLY LEU LEU GLU LYS TYR ASN SER LEU SEQRES 3 A 271 LEU GLU PHE PHE LYS ASN LYS LYS VAL ILE VAL ALA TYR SEQRES 4 A 271 SER GLY GLY VAL ASP SER THR LEU ILE SER LYS ILE ALA SEQRES 5 A 271 SER ASP ASN ALA GLN THR LEU ALA VAL THR ILE ASP ASN SEQRES 6 A 271 GLY PHE PHE SER GLU ASN VAL ILE LYS LYS ALA GLU ASN SEQRES 7 A 271 ARG ALA LYS LYS TYR ASN ILE PRO GLN LYS THR ILE LYS SEQRES 8 A 271 ILE ASP TYR LEU ASN GLU ILE THR SER LYS ASP LEU GLU SEQRES 9 A 271 ASN ARG CYS TYR ASN CYS LYS LYS ARG ILE ALA GLU GLU SEQRES 10 A 271 LEU LYS ARG ILE LYS ASN GLU LEU ASN TYR ASP ILE ILE SEQRES 11 A 271 VAL ASP GLY THR ILE TYR ASP ASP ILE PHE GLU ASP ARG SEQRES 12 A 271 PRO GLY ILE LYS ALA PHE ASN GLU SER ASN ILE ILE SER SEQRES 13 A 271 PRO LEU SER ASN LEU LYS PHE SER LYS ASN ASP VAL PHE SEQRES 14 A 271 GLU LEU SER ASN TYR LEU LYS ILE ASP ILE PRO LYS LYS SEQRES 15 A 271 ASP THR CYS MET ALA THR ARG ILE LEU SER ALA PRO ILE SEQRES 16 A 271 SER LYS GLU ASN MET ALA LYS SER ASN LEU ALA GLU GLU SEQRES 17 A 271 PHE ILE LYS LEU ASN PHE HIS ILE GLU SER TYR LEU ARG SEQRES 18 A 271 VAL ARG TYR LEU GLU ASN ILE ALA ILE ILE GLU LEU THR SEQRES 19 A 271 LYS ASN GLU SER GLU LYS ILE PHE ASP ASN ASP SER ILE SEQRES 20 A 271 GLU ARG ILE ASN THR GLU LEU LYS LYS ILE GLY PHE GLU SEQRES 21 A 271 LYS VAL VAL LEU ASP LEU ASN PHE LYS GLY SER SEQRES 1 B 271 GLY PRO MET LEU GLU VAL LEU PHE GLN GLY PRO MET ILE SEQRES 2 B 271 ILE MET GLU LYS GLY LEU LEU GLU LYS TYR ASN SER LEU SEQRES 3 B 271 LEU GLU PHE PHE LYS ASN LYS LYS VAL ILE VAL ALA TYR SEQRES 4 B 271 SER GLY GLY VAL ASP SER THR LEU ILE SER LYS ILE ALA SEQRES 5 B 271 SER ASP ASN ALA GLN THR LEU ALA VAL THR ILE ASP ASN SEQRES 6 B 271 GLY PHE PHE SER GLU ASN VAL ILE LYS LYS ALA GLU ASN SEQRES 7 B 271 ARG ALA LYS LYS TYR ASN ILE PRO GLN LYS THR ILE LYS SEQRES 8 B 271 ILE ASP TYR LEU ASN GLU ILE THR SER LYS ASP LEU GLU SEQRES 9 B 271 ASN ARG CYS TYR ASN CYS LYS LYS ARG ILE ALA GLU GLU SEQRES 10 B 271 LEU LYS ARG ILE LYS ASN GLU LEU ASN TYR ASP ILE ILE SEQRES 11 B 271 VAL ASP GLY THR ILE TYR ASP ASP ILE PHE GLU ASP ARG SEQRES 12 B 271 PRO GLY ILE LYS ALA PHE ASN GLU SER ASN ILE ILE SER SEQRES 13 B 271 PRO LEU SER ASN LEU LYS PHE SER LYS ASN ASP VAL PHE SEQRES 14 B 271 GLU LEU SER ASN TYR LEU LYS ILE ASP ILE PRO LYS LYS SEQRES 15 B 271 ASP THR CYS MET ALA THR ARG ILE LEU SER ALA PRO ILE SEQRES 16 B 271 SER LYS GLU ASN MET ALA LYS SER ASN LEU ALA GLU GLU SEQRES 17 B 271 PHE ILE LYS LEU ASN PHE HIS ILE GLU SER TYR LEU ARG SEQRES 18 B 271 VAL ARG TYR LEU GLU ASN ILE ALA ILE ILE GLU LEU THR SEQRES 19 B 271 LYS ASN GLU SER GLU LYS ILE PHE ASP ASN ASP SER ILE SEQRES 20 B 271 GLU ARG ILE ASN THR GLU LEU LYS LYS ILE GLY PHE GLU SEQRES 21 B 271 LYS VAL VAL LEU ASP LEU ASN PHE LYS GLY SER HET ANP A 301 44 HET BME A 302 4 HET SO4 A 303 5 HET SO4 A 304 5 HET ANP B 301 44 HET GOL B 302 6 HET BME B 303 4 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 BME 2(C2 H6 O S) FORMUL 5 SO4 6(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 14 HOH *30(H2 O) HELIX 1 AA1 GLU A 5 LYS A 20 1 16 HELIX 2 AA2 GLY A 31 ALA A 45 1 15 HELIX 3 AA3 SER A 58 TYR A 72 1 15 HELIX 4 AA4 ASP A 91 LEU A 114 1 24 HELIX 5 AA5 ILE A 124 GLU A 130 5 7 HELIX 6 AA6 PRO A 133 GLU A 140 1 8 HELIX 7 AA7 SER A 145 LEU A 150 1 6 HELIX 8 AA8 SER A 153 LEU A 164 1 12 HELIX 9 AA9 SER A 185 HIS A 204 1 20 HELIX 10 AB1 THR A 223 PHE A 231 1 9 HELIX 11 AB2 ASP A 232 ILE A 246 1 15 HELIX 12 AB3 GLU B 5 LYS B 20 1 16 HELIX 13 AB4 GLY B 31 ALA B 45 1 15 HELIX 14 AB5 SER B 58 TYR B 72 1 15 HELIX 15 AB6 GLU B 93 LEU B 114 1 22 HELIX 16 AB7 ILE B 124 GLU B 130 5 7 HELIX 17 AB8 PRO B 133 GLU B 140 1 8 HELIX 18 AB9 SER B 145 LEU B 150 1 6 HELIX 19 AC1 SER B 153 LEU B 164 1 12 HELIX 20 AC2 ASN B 188 HIS B 204 1 17 HELIX 21 AC3 THR B 223 PHE B 231 1 9 HELIX 22 AC4 ASP B 232 ILE B 246 1 15 SHEET 1 AA1 4 GLN A 76 LYS A 80 0 SHEET 2 AA1 4 GLN A 46 ASP A 53 1 N THR A 51 O ILE A 79 SHEET 3 AA1 4 LYS A 23 ALA A 27 1 N VAL A 26 O VAL A 50 SHEET 4 AA1 4 ILE A 118 VAL A 120 1 O VAL A 120 N ALA A 27 SHEET 1 AA2 5 LEU A 209 LEU A 214 0 SHEET 2 AA2 5 ILE A 217 LEU A 222 -1 O ILE A 219 N ARG A 212 SHEET 3 AA2 5 VAL A 252 ASP A 254 1 O VAL A 252 N ALA A 218 SHEET 4 AA2 5 LYS B 250 ASP B 254 -1 O LEU B 253 N LEU A 253 SHEET 5 AA2 5 ILE B 217 ILE B 220 1 N ILE B 220 O ASP B 254 SHEET 1 AA3 4 GLN B 76 LYS B 80 0 SHEET 2 AA3 4 GLN B 46 ASP B 53 1 N THR B 51 O ILE B 79 SHEET 3 AA3 4 LYS B 23 ALA B 27 1 N VAL B 26 O VAL B 50 SHEET 4 AA3 4 ILE B 118 VAL B 120 1 O ILE B 118 N ILE B 25 SSBOND 1 CYS A 96 CYS B 174 1555 1555 2.03 SSBOND 2 CYS A 174 CYS B 96 1555 1555 2.04 LINK SG CYS A 99 S2 BME A 302 1555 1555 2.00 LINK SG CYS B 99 S2 BME B 303 1555 1555 2.01 CRYST1 144.810 144.810 193.640 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006906 0.003987 0.000000 0.00000 SCALE2 0.000000 0.007974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005164 0.00000 MTRIX1 1 -0.963381 0.129855 0.234595 -136.79840 1 MTRIX2 1 0.137723 -0.511048 0.848447 15.46429 1 MTRIX3 1 0.230065 0.849687 0.474450 18.94973 1