HEADER DNA 12-MAY-22 8CS6 TITLE [AGG/CTC] SELF-ASSEMBLED 3D DNA HEXAGONAL TENSEGRITY TRIANGLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*G)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SYNTHETIC CONSTRUCT, SELF-ASSEMBLY, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,Y.P.OHAYON,N.C.SEEMAN,C.MAO,R.SHA REVDAT 4 25-OCT-23 8CS6 1 REMARK REVDAT 3 08-FEB-23 8CS6 1 JRNL REVDAT 2 18-JAN-23 8CS6 1 JRNL REVDAT 1 11-JAN-23 8CS6 0 JRNL AUTH B.LU,K.WOLOSZYN,Y.P.OHAYON,B.YANG,C.ZHANG,C.MAO,N.C.SEEMAN, JRNL AUTH 2 S.VECCHIONI,R.SHA JRNL TITL PROGRAMMABLE 3D HEXAGONAL GEOMETRY OF DNA TENSEGRITY JRNL TITL 2 TRIANGLES. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 13451 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 36520622 JRNL DOI 10.1002/ANIE.202213451 REMARK 2 REMARK 2 RESOLUTION. 6.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 39 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.6300 - 6.7600 0.83 728 39 0.2152 0.2555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.663 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 336.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 459.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 956 REMARK 3 ANGLE : 1.603 1467 REMARK 3 CHIRALITY : 0.098 166 REMARK 3 PLANARITY : 0.013 42 REMARK 3 DIHEDRAL : 39.607 406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.747 -29.772 9.423 REMARK 3 T TENSOR REMARK 3 T11: -6.4290 T22: -13.3371 REMARK 3 T33: -6.8537 T12: -10.5547 REMARK 3 T13: 7.1499 T23: 11.1553 REMARK 3 L TENSOR REMARK 3 L11: 1.8640 L22: 0.7390 REMARK 3 L33: 0.9580 L12: -1.9883 REMARK 3 L13: 1.8477 L23: 0.8847 REMARK 3 S TENSOR REMARK 3 S11: -2.1321 S12: 2.4172 S13: -0.1995 REMARK 3 S21: 4.1295 S22: 3.8798 S23: 0.5968 REMARK 3 S31: -1.5394 S32: -4.5077 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 119:125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.523 -27.989 7.243 REMARK 3 T TENSOR REMARK 3 T11: 2.7712 T22: 5.0843 REMARK 3 T33: 1.1237 T12: 1.5818 REMARK 3 T13: 1.0023 T23: 2.7174 REMARK 3 L TENSOR REMARK 3 L11: -0.0118 L22: -0.0799 REMARK 3 L33: -0.3560 L12: 0.0695 REMARK 3 L13: 0.3851 L23: -0.1518 REMARK 3 S TENSOR REMARK 3 S11: 3.4092 S12: 0.9666 S13: 0.0801 REMARK 3 S21: -0.0975 S22: 1.7985 S23: -0.3771 REMARK 3 S31: -1.0489 S32: -1.3282 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 209:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.917 -41.897 20.303 REMARK 3 T TENSOR REMARK 3 T11: 5.6647 T22: 5.7642 REMARK 3 T33: 4.3834 T12: 0.1777 REMARK 3 T13: -2.8026 T23: -1.9201 REMARK 3 L TENSOR REMARK 3 L11: 0.0088 L22: -0.0409 REMARK 3 L33: 0.0291 L12: 0.0285 REMARK 3 L13: 0.0486 L23: 0.0566 REMARK 3 S TENSOR REMARK 3 S11: -1.0014 S12: -1.0377 S13: -0.1478 REMARK 3 S21: 1.7312 S22: 1.0687 S23: 0.7719 REMARK 3 S31: -1.4974 S32: -0.9746 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 201:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.065 -10.212 -5.238 REMARK 3 T TENSOR REMARK 3 T11: 7.3131 T22: 0.1005 REMARK 3 T33: 1.8413 T12: -0.3398 REMARK 3 T13: 2.1163 T23: 2.2805 REMARK 3 L TENSOR REMARK 3 L11: -0.0548 L22: 0.0428 REMARK 3 L33: -0.0780 L12: -0.2125 REMARK 3 L13: -0.1292 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 2.0617 S12: 3.2531 S13: 1.4925 REMARK 3 S21: 1.4157 S22: 2.3131 S23: -0.3465 REMARK 3 S31: 1.4838 S32: 2.0328 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 780 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.760 REMARK 200 RESOLUTION RANGE LOW (A) : 60.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7R96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 87.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 9.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75 M AMMONIUM SULFATE, 120 MM TRIS, REMARK 280 120 MM ACETIC ACID, 6 MM EDTA, PH 9.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.64250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.64250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.64250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.62850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -105.01164 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 121.25700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N2 DG A 102 O2 DC D 202 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 101 N1 DA A 101 C2 0.112 REMARK 500 DA A 101 C2 DA A 101 N3 0.062 REMARK 500 DA A 101 N3 DA A 101 C4 0.051 REMARK 500 DA A 101 C4 DA A 101 C5 0.145 REMARK 500 DA A 101 C5 DA A 101 C6 0.152 REMARK 500 DA A 101 C6 DA A 101 N1 0.077 REMARK 500 DA A 101 C5 DA A 101 N7 0.058 REMARK 500 DA A 101 N7 DA A 101 C8 0.092 REMARK 500 DA A 101 N9 DA A 101 C4 0.088 REMARK 500 DA A 101 C6 DA A 101 N6 0.114 REMARK 500 DG A 102 C5' DG A 102 C4' 0.048 REMARK 500 DG A 102 N1 DG A 102 C2 0.087 REMARK 500 DG A 102 N3 DG A 102 C4 0.063 REMARK 500 DG A 102 C4 DG A 102 C5 0.077 REMARK 500 DG A 102 C5 DG A 102 C6 0.141 REMARK 500 DG A 102 C6 DG A 102 N1 0.081 REMARK 500 DG A 102 C5 DG A 102 N7 0.063 REMARK 500 DG A 102 C6 DG A 102 O6 0.122 REMARK 500 DG A 103 C2 DG A 103 N3 0.054 REMARK 500 DG A 103 N3 DG A 103 C4 0.091 REMARK 500 DG A 103 C4 DG A 103 C5 0.048 REMARK 500 DG A 103 C6 DG A 103 N1 0.069 REMARK 500 DG A 103 N9 DG A 103 C4 0.067 REMARK 500 DG A 103 C6 DG A 103 O6 0.061 REMARK 500 DC A 104 C1' DC A 104 N1 0.080 REMARK 500 DC A 107 C1' DC A 107 N1 0.098 REMARK 500 DC A 113 O3' DC A 113 C3' -0.061 REMARK 500 DC A 120 C1' DC A 120 N1 0.087 REMARK 500 DA B 123 O3' DA B 123 C3' -0.062 REMARK 500 DC B 124 O3' DC B 124 C3' -0.038 REMARK 500 DC D 200 C2 DC D 200 N3 0.056 REMARK 500 DC D 200 N3 DC D 200 C4 0.046 REMARK 500 DT D 201 C1' DT D 201 N1 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 101 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA A 101 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA A 101 C4 - C5 - N7 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 102 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG A 102 C4 - C5 - N7 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG A 102 C6 - C5 - N7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 107 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 120 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA B 123 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC B 124 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 209 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 203 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA D 205 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG D 207 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7R96 RELATED DB: PDB REMARK 900 DIFFERENT STICKY ENDS DBREF 8CS6 A 101 121 PDB 8CS6 8CS6 101 121 DBREF 8CS6 B 119 125 PDB 8CS6 8CS6 119 125 DBREF 8CS6 C 209 213 PDB 8CS6 8CS6 209 213 DBREF 8CS6 D 200 208 PDB 8CS6 8CS6 200 208 SEQRES 1 A 21 DA DG DG DC DA DG DC DC DT DG DT DA DC SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DG DT DA DC DA SEQRES 1 C 5 DG DG DC DT DG SEQRES 1 D 9 DC DT DC DT DG DA DT DG DT CRYST1 121.257 121.257 59.285 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008247 0.004761 0.000000 0.00000 SCALE2 0.000000 0.009523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016868 0.00000