HEADER ISOMERASE/DNA 25-MAY-22 8CZQ TITLE THE CRYSTAL STRUCTURE OF MTBTOP1 IN COMPLEX WITH BOTH G- AND T- TITLE 2 SEGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA TOPOISOMERASE I; COMPND 5 EC: 5.99.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*TP*TP*CP*CP*GP*CP*TP*TP*GP*AP*C)-3'); COMPND 9 CHAIN: B, C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TOPA_1, TOPA, BN1213_00605, BN1303_02614, ERS013471_01645, SOURCE 5 ERS027644_01463, ERS124361_02532, RN05_3882; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS CRYSTAL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ET-HIS6-MOCR TEV-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 14 ORGANISM_TAXID: 1773 KEYWDS TOPOISOMERASE 1, MYCOBACTERIUM TUBERCULOSIS, G-SEGMENT, T-SEGMENT, KEYWDS 2 ISOMERASE, ISOMERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,Y.-C.TSE-DINH REVDAT 4 25-OCT-23 8CZQ 1 REMARK REVDAT 3 01-FEB-23 8CZQ 1 JRNL REVDAT 2 11-JAN-23 8CZQ 1 JRNL REVDAT 1 14-DEC-22 8CZQ 0 JRNL AUTH S.FERDOUS,T.DASGUPTA,T.ANNAMALAI,K.TAN,Y.C.TSE-DINH JRNL TITL THE INTERACTION BETWEEN TRANSPORT-SEGMENT DNA AND JRNL TITL 2 TOPOISOMERASE IA-CRYSTAL STRUCTURE OF MTBTOP1 IN COMPLEX JRNL TITL 3 WITH BOTH G- AND T-SEGMENTS. JRNL REF NUCLEIC ACIDS RES. V. 51 349 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36583363 JRNL DOI 10.1093/NAR/GKAC1205 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2500 - 5.7800 0.99 2759 114 0.2324 0.2575 REMARK 3 2 5.7800 - 4.5900 1.00 2643 140 0.2304 0.2192 REMARK 3 3 4.5900 - 4.0100 1.00 2631 94 0.2161 0.2255 REMARK 3 4 4.0100 - 3.6400 1.00 2557 158 0.2358 0.2669 REMARK 3 5 3.6400 - 3.3800 1.00 2556 145 0.2784 0.3317 REMARK 3 6 3.3800 - 3.1800 1.00 2524 156 0.2921 0.2975 REMARK 3 7 3.1800 - 3.0200 0.99 2549 149 0.2881 0.3338 REMARK 3 8 3.0200 - 2.8900 0.99 2509 125 0.3330 0.3538 REMARK 3 9 2.8900 - 2.7800 0.95 2469 117 0.3889 0.4069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.427 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5848 REMARK 3 ANGLE : 0.558 8082 REMARK 3 CHIRALITY : 0.038 913 REMARK 3 PLANARITY : 0.006 940 REMARK 3 DIHEDRAL : 18.413 1068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4303 13.3368 49.0038 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.3661 REMARK 3 T33: 0.5019 T12: 0.0648 REMARK 3 T13: 0.0356 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 1.6594 L22: 3.2786 REMARK 3 L33: 1.3237 L12: 0.9275 REMARK 3 L13: 0.4114 L23: 0.8900 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.1587 S13: 0.1195 REMARK 3 S21: -0.2586 S22: 0.0447 S23: -0.0600 REMARK 3 S31: -0.1074 S32: 0.2239 S33: 0.0448 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4006 29.3776 24.4689 REMARK 3 T TENSOR REMARK 3 T11: 0.8950 T22: 0.8202 REMARK 3 T33: 0.7958 T12: -0.2005 REMARK 3 T13: -0.0615 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 3.5711 L22: 3.0975 REMARK 3 L33: 6.0073 L12: 1.5229 REMARK 3 L13: 3.1162 L23: 0.9579 REMARK 3 S TENSOR REMARK 3 S11: -0.4196 S12: 1.0744 S13: 0.3021 REMARK 3 S21: -0.7961 S22: 0.4428 S23: 0.1084 REMARK 3 S31: -0.7577 S32: 0.7847 S33: 0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 704 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1911 -1.2332 37.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.3755 T22: 0.4662 REMARK 3 T33: 0.5190 T12: 0.0141 REMARK 3 T13: -0.1529 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 1.6149 L22: 2.5347 REMARK 3 L33: 4.4636 L12: 0.0167 REMARK 3 L13: -1.2130 L23: 0.4765 REMARK 3 S TENSOR REMARK 3 S11: -0.1981 S12: 0.2977 S13: 0.0735 REMARK 3 S21: -0.3488 S22: 0.0963 S23: 0.4605 REMARK 3 S31: 0.1457 S32: -0.3006 S33: 0.0845 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9216 8.7457 52.0727 REMARK 3 T TENSOR REMARK 3 T11: 0.5124 T22: 0.7598 REMARK 3 T33: 0.7349 T12: -0.0192 REMARK 3 T13: 0.1443 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 6.5533 L22: 8.6838 REMARK 3 L33: 5.8160 L12: 2.7595 REMARK 3 L13: 0.5336 L23: -0.1253 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.1505 S13: -0.7262 REMARK 3 S21: -0.1104 S22: 0.0370 S23: -1.5620 REMARK 3 S31: -0.1997 S32: 1.5540 S33: -0.2397 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7742 6.2524 16.0297 REMARK 3 T TENSOR REMARK 3 T11: 0.5178 T22: 1.0430 REMARK 3 T33: 0.9834 T12: -0.1352 REMARK 3 T13: -0.1344 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 3.6251 L22: 7.5049 REMARK 3 L33: 6.6655 L12: -3.9528 REMARK 3 L13: 1.9124 L23: 0.2420 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 1.6303 S13: 0.7051 REMARK 3 S21: -0.1754 S22: -0.1785 S23: -0.3188 REMARK 3 S31: -0.0238 S32: -0.0533 S33: 0.2184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5833 10.4089 16.9778 REMARK 3 T TENSOR REMARK 3 T11: 0.8355 T22: 1.4854 REMARK 3 T33: 0.9897 T12: -0.2938 REMARK 3 T13: -0.0977 T23: 0.4813 REMARK 3 L TENSOR REMARK 3 L11: 7.2939 L22: 8.7389 REMARK 3 L33: 3.3556 L12: -6.3556 REMARK 3 L13: 3.4359 L23: -0.5998 REMARK 3 S TENSOR REMARK 3 S11: 0.1639 S12: -0.9329 S13: -0.5910 REMARK 3 S21: -0.2593 S22: 0.1735 S23: 1.3213 REMARK 3 S31: 0.2554 S32: -1.1315 S33: -0.4166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6CQI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, TRIHYDRATE, 12% REMARK 280 (W/V) PEG 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.25050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.25050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ASN A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 226 REMARK 465 ALA A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 SER A 230 REMARK 465 ASP A 231 REMARK 465 PRO A 232 REMARK 465 ASP A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 PRO A 236 REMARK 465 PRO A 237 REMARK 465 GLY A 266 REMARK 465 ASP A 267 REMARK 465 GLY A 283 REMARK 465 LEU A 284 REMARK 465 ASN A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 465 VAL A 475 REMARK 465 ASP A 476 REMARK 465 GLU A 477 REMARK 465 LEU A 478 REMARK 465 VAL A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 GLU A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 ASP A 485 REMARK 465 ALA A 486 REMARK 465 GLU A 487 REMARK 465 ARG A 488 REMARK 465 DC D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 16 OG REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LEU A 225 CG CD1 CD2 REMARK 470 THR A 238 OG1 CG2 REMARK 470 PHE A 239 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 243 CD1 CD2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 VAL A 271 CG1 CG2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 SER A 276 OG REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 THR A 290 OG1 CG2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 320 CD1 CD2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 359 CZ NH1 NH2 REMARK 470 GLN A 364 CG CD OE1 NE2 REMARK 470 LEU A 365 CG CD1 CD2 REMARK 470 TYR A 366 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 368 CG OD1 OD2 REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 GLU A 397 CD OE1 OE2 REMARK 470 THR A 398 OG1 CG2 REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 ARG A 436 CG CD NE CZ NH1 NH2 REMARK 470 MET A 438 CG SD CE REMARK 470 THR A 445 OG1 CG2 REMARK 470 MET A 447 CG SD CE REMARK 470 HIS A 450 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 451 CG CD OE1 NE2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 THR A 461 OG1 CG2 REMARK 470 LEU A 462 CG CD1 CD2 REMARK 470 THR A 463 OG1 CG2 REMARK 470 LEU A 468 CG CD1 CD2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 TYR A 471 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 472 CG1 CG2 REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 493 CG CD1 CD2 REMARK 470 ARG A 498 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 499 CG CD1 CD2 REMARK 470 ASP A 500 CG OD1 OD2 REMARK 470 ILE A 501 CG1 CG2 CD1 REMARK 470 GLU A 503 CG CD OE1 OE2 REMARK 470 LEU A 504 CG CD1 CD2 REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 SER A 643 OG REMARK 470 ASP A 673 CG OD1 OD2 REMARK 470 THR A 674 OG1 CG2 REMARK 470 THR A 678 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 27 OP1 DT B 9 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 143 NH1 ARG A 621 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 77 63.38 -115.40 REMARK 500 VAL A 186 -80.44 -122.07 REMARK 500 LYS A 189 -7.36 70.60 REMARK 500 THR A 244 -51.03 -123.53 REMARK 500 ALA A 247 -131.96 59.65 REMARK 500 ALA A 294 55.37 -146.60 REMARK 500 ARG A 318 -67.09 -104.41 REMARK 500 TYR A 366 -84.88 -102.85 REMARK 500 ARG A 380 -167.23 -117.85 REMARK 500 PRO A 412 0.70 -57.89 REMARK 500 SER A 448 89.46 -162.74 REMARK 500 HIS A 450 49.07 -91.41 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8CZQ A 2 704 UNP A0A0E8VY41_MYCTX DBREF2 8CZQ A A0A0E8VY41 63 765 DBREF 8CZQ B 1 12 PDB 8CZQ 8CZQ 1 12 DBREF 8CZQ C 1 12 PDB 8CZQ 8CZQ 1 12 DBREF 8CZQ D 1 12 PDB 8CZQ 8CZQ 1 12 SEQADV 8CZQ SER A -1 UNP A0A0E8VY4 EXPRESSION TAG SEQADV 8CZQ ASN A 0 UNP A0A0E8VY4 EXPRESSION TAG SEQADV 8CZQ ALA A 1 UNP A0A0E8VY4 EXPRESSION TAG SEQRES 1 A 706 SER ASN ALA ALA ASP PRO LYS THR LYS GLY ARG GLY SER SEQRES 2 A 706 GLY GLY ASN GLY SER GLY ARG ARG LEU VAL ILE VAL GLU SEQRES 3 A 706 SER PRO THR LYS ALA ARG LYS LEU ALA SER TYR LEU GLY SEQRES 4 A 706 SER GLY TYR ILE VAL GLU SER SER ARG GLY HIS ILE ARG SEQRES 5 A 706 ASP LEU PRO ARG ALA ALA SER ASP VAL PRO ALA LYS TYR SEQRES 6 A 706 LYS SER GLN PRO TRP ALA ARG LEU GLY VAL ASN VAL ASP SEQRES 7 A 706 ALA ASP PHE GLU PRO LEU TYR ILE ILE SER PRO GLU LYS SEQRES 8 A 706 ARG SER THR VAL SER GLU LEU ARG GLY LEU LEU LYS ASP SEQRES 9 A 706 VAL ASP GLU LEU TYR LEU ALA THR ASP GLY ASP ARG GLU SEQRES 10 A 706 GLY GLU ALA ILE ALA TRP HIS LEU LEU GLU THR LEU LYS SEQRES 11 A 706 PRO ARG ILE PRO VAL LYS ARG MET VAL PHE HIS GLU ILE SEQRES 12 A 706 THR GLU PRO ALA ILE ARG ALA ALA ALA GLU HIS PRO ARG SEQRES 13 A 706 ASP LEU ASP ILE ASP LEU VAL ASP ALA GLN GLU THR ARG SEQRES 14 A 706 ARG ILE LEU ASP ARG LEU TYR GLY TYR GLU VAL SER PRO SEQRES 15 A 706 VAL LEU TRP LYS LYS VAL ALA PRO LYS LEU SER ALA GLY SEQRES 16 A 706 ARG VAL GLN SER VAL ALA THR ARG ILE ILE VAL ALA ARG SEQRES 17 A 706 GLU ARG ASP ARG MET ALA PHE ARG SER ALA ALA TYR TRP SEQRES 18 A 706 ASP ILE LEU ALA LYS LEU ASP ALA SER VAL SER ASP PRO SEQRES 19 A 706 ASP ALA ALA PRO PRO THR PHE SER ALA ARG LEU THR ALA SEQRES 20 A 706 VAL ALA GLY ARG ARG VAL ALA THR GLY ARG ASP PHE ASP SEQRES 21 A 706 SER LEU GLY THR LEU ARG LYS GLY ASP GLU VAL ILE VAL SEQRES 22 A 706 LEU ASP GLU GLY SER ALA THR ALA LEU ALA ALA GLY LEU SEQRES 23 A 706 ASP GLY THR GLN LEU THR VAL ALA SER ALA GLU GLU LYS SEQRES 24 A 706 PRO TYR ALA ARG ARG PRO TYR PRO PRO PHE MET THR SER SEQRES 25 A 706 THR LEU GLN GLN GLU ALA SER ARG LYS LEU ARG PHE SER SEQRES 26 A 706 ALA GLU ARG THR MET SER ILE ALA GLN ARG LEU TYR GLU SEQRES 27 A 706 ASN GLY TYR ILE THR TYR MET ARG THR ASP SER THR THR SEQRES 28 A 706 LEU SER GLU SER ALA ILE ASN ALA ALA ARG THR GLN ALA SEQRES 29 A 706 ARG GLN LEU TYR GLY ASP GLU TYR VAL ALA PRO ALA PRO SEQRES 30 A 706 ARG GLN TYR THR ARG LYS VAL LYS ASN ALA GLN GLU ALA SEQRES 31 A 706 HIS GLU ALA ILE ARG PRO ALA GLY GLU THR PHE ALA THR SEQRES 32 A 706 PRO ASP ALA VAL ARG ARG GLU LEU ASP GLY PRO ASN ILE SEQRES 33 A 706 ASP ASP PHE ARG LEU TYR GLU LEU ILE TRP GLN ARG THR SEQRES 34 A 706 VAL ALA SER GLN MET ALA ASP ALA ARG GLY MET THR LEU SEQRES 35 A 706 SER LEU ARG ILE THR GLY MET SER GLY HIS GLN GLU VAL SEQRES 36 A 706 VAL PHE SER ALA THR GLY ARG THR LEU THR PHE PRO GLY SEQRES 37 A 706 PHE LEU LYS ALA TYR VAL GLU THR VAL ASP GLU LEU VAL SEQRES 38 A 706 GLY GLY GLU ALA ASP ASP ALA GLU ARG ARG LEU PRO HIS SEQRES 39 A 706 LEU THR PRO GLY GLN ARG LEU ASP ILE VAL GLU LEU THR SEQRES 40 A 706 PRO ASP GLY HIS ALA THR ASN PRO PRO ALA ARG TYR THR SEQRES 41 A 706 GLU ALA SER LEU VAL LYS ALA LEU GLU GLU LEU GLY ILE SEQRES 42 A 706 GLY ARG PRO SER THR TYR SER SER ILE ILE LYS THR ILE SEQRES 43 A 706 GLN ASP ARG GLY TYR VAL HIS LYS LYS GLY SER ALA LEU SEQRES 44 A 706 VAL PRO SER TRP VAL ALA PHE ALA VAL THR GLY LEU LEU SEQRES 45 A 706 GLU GLN HIS PHE GLY ARG LEU VAL ASP TYR ASP PHE THR SEQRES 46 A 706 ALA ALA MET GLU ASP GLU LEU ASP GLU ILE ALA ALA GLY SEQRES 47 A 706 ASN GLU ARG ARG THR ASN TRP LEU ASN ASN PHE TYR PHE SEQRES 48 A 706 GLY GLY ASP HIS GLY VAL PRO ASP SER VAL ALA ARG SER SEQRES 49 A 706 GLY GLY LEU LYS LYS LEU VAL GLY ILE ASN LEU GLU GLY SEQRES 50 A 706 ILE ASP ALA ARG GLU VAL ASN SER ILE LYS LEU PHE ASP SEQRES 51 A 706 ASP THR HIS GLY ARG PRO ILE TYR VAL ARG VAL GLY LYS SEQRES 52 A 706 ASN GLY PRO TYR LEU GLU ARG LEU VAL ALA GLY ASP THR SEQRES 53 A 706 GLY GLU PRO THR PRO GLN ARG ALA ASN LEU SER ASP SER SEQRES 54 A 706 ILE THR PRO ASP GLU LEU THR LEU GLN VAL ALA GLU GLU SEQRES 55 A 706 LEU PHE ALA THR SEQRES 1 B 12 DC DT DT DC DC DG DC DT DT DG DA DC SEQRES 1 C 12 DC DT DT DC DC DG DC DT DT DG DA DC SEQRES 1 D 12 DC DT DT DC DC DG DC DT DT DG DA DC HET GOL A 801 6 HET ACT A 802 4 HET ACT A 803 4 HET ACT A 804 4 HET ACT A 805 4 HET PO4 A 806 5 HET PO4 A 807 5 HET PO4 A 808 5 HET PO4 A 809 5 HET PO4 C 101 5 HET PO4 D 101 5 HET PO4 D 102 5 HET PO4 D 103 5 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 10 PO4 8(O4 P 3-) HELIX 1 AA1 SER A 25 GLY A 37 1 13 HELIX 2 AA2 ALA A 55 VAL A 59 5 5 HELIX 3 AA3 GLN A 66 ARG A 70 5 5 HELIX 4 AA4 LYS A 89 LYS A 101 1 13 HELIX 5 AA5 ASP A 113 LYS A 128 1 16 HELIX 6 AA6 THR A 142 GLU A 151 1 10 HELIX 7 AA7 ASP A 157 VAL A 186 1 30 HELIX 8 AA8 VAL A 195 ALA A 212 1 18 HELIX 9 AA9 THR A 253 PHE A 257 5 5 HELIX 10 AB1 ASP A 273 LEU A 280 1 8 HELIX 11 AB2 MET A 308 LEU A 320 1 13 HELIX 12 AB3 SER A 323 ASN A 337 1 15 HELIX 13 AB4 SER A 351 TYR A 366 1 16 HELIX 14 AB5 THR A 401 ARG A 407 1 7 HELIX 15 AB6 ASP A 410 PRO A 412 5 3 HELIX 16 AB7 ASN A 413 SER A 430 1 18 HELIX 17 AB8 GLY A 466 ALA A 470 5 5 HELIX 18 AB9 THR A 518 GLY A 530 1 13 HELIX 19 AC1 ARG A 533 ARG A 547 1 15 HELIX 20 AC2 SER A 560 PHE A 574 1 15 HELIX 21 AC3 ASP A 581 ALA A 595 1 15 HELIX 22 AC4 ARG A 599 GLY A 610 1 12 HELIX 23 AC5 ASP A 617 SER A 622 1 6 HELIX 24 AC6 GLY A 624 ILE A 636 1 13 HELIX 25 AC7 ASP A 637 ASN A 642 1 6 HELIX 26 AC8 THR A 689 LEU A 693 5 5 HELIX 27 AC9 THR A 694 THR A 704 1 11 SHEET 1 AA1 4 TYR A 40 SER A 44 0 SHEET 2 AA1 4 ARG A 19 VAL A 23 1 N VAL A 21 O GLU A 43 SHEET 3 AA1 4 GLU A 105 LEU A 108 1 O TYR A 107 N LEU A 20 SHEET 4 AA1 4 VAL A 133 ARG A 135 1 O LYS A 134 N LEU A 108 SHEET 1 AA2 2 ARG A 50 ASP A 51 0 SHEET 2 AA2 2 ILE A 84 ILE A 85 -1 O ILE A 84 N ASP A 51 SHEET 1 AA3 2 VAL A 73 ASN A 74 0 SHEET 2 AA3 2 GLU A 80 PRO A 81 -1 O GLU A 80 N ASN A 74 SHEET 1 AA4 2 ALA A 217 ILE A 221 0 SHEET 2 AA4 2 PRO A 506 ALA A 510 -1 O ASP A 507 N ASP A 220 SHEET 1 AA5 6 ARG A 249 ARG A 250 0 SHEET 2 AA5 6 ARG A 242 VAL A 246 -1 N VAL A 246 O ARG A 249 SHEET 3 AA5 6 VAL A 453 LEU A 462 -1 O VAL A 454 N ALA A 245 SHEET 4 AA5 6 ALA A 435 THR A 445 -1 N ILE A 444 O PHE A 455 SHEET 5 AA5 6 GLN A 288 ARG A 301 -1 N ARG A 301 O ALA A 435 SHEET 6 AA5 6 LEU A 499 ASP A 500 -1 O LEU A 499 N LEU A 289 SHEET 1 AA6 2 VAL A 550 LYS A 553 0 SHEET 2 AA6 2 ALA A 556 PRO A 559 -1 O VAL A 558 N HIS A 551 SHEET 1 AA7 4 SER A 643 ASP A 648 0 SHEET 2 AA7 4 PRO A 654 GLY A 660 -1 O VAL A 657 N ILE A 644 SHEET 3 AA7 4 GLY A 663 LEU A 669 -1 O GLU A 667 N TYR A 656 SHEET 4 AA7 4 PRO A 679 ASN A 683 -1 O GLN A 680 N ARG A 668 CRYST1 92.501 98.632 104.090 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009607 0.00000