HEADER DNA BINDING PROTEIN/DNA 30-MAY-22 8D2M TITLE COVALENT SCHIFF BASE COMPLEX OF YEDK C2A AND ABASIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABASIC SITE PROCESSING PROTEIN YEDK; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS DNA-PROTEIN CROSSLINK, ABASIC SITE, SCHIFF BASE, REPLICATION STRESS, KEYWDS 2 DNA BINDING PROTEIN, DNA BINDING, PROTEIN-DNA COMPLEX, DNA BINDING KEYWDS 3 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.F.EICHMAN,K.A.PAULIN REVDAT 3 16-OCT-24 8D2M 1 REMARK REVDAT 2 25-OCT-23 8D2M 1 REMARK REVDAT 1 12-APR-23 8D2M 0 JRNL AUTH K.A.PAULIN,D.CORTEZ,B.F.EICHMAN JRNL TITL THE SOS RESPONSE-ASSOCIATED PEPTIDASE (SRAP) DOMAIN OF YEDK JRNL TITL 2 CATALYZES RING OPENING OF ABASIC SITES AND REVERSAL OF ITS JRNL TITL 3 DNA-PROTEIN CROSS-LINK. JRNL REF J.BIOL.CHEM. V. 298 02307 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35934051 JRNL DOI 10.1016/J.JBC.2022.102307 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0250 - 4.2806 0.99 2810 148 0.1546 0.1820 REMARK 3 2 4.2806 - 3.3984 1.00 2741 145 0.1477 0.1926 REMARK 3 3 3.3984 - 2.9690 1.00 2735 143 0.1819 0.2313 REMARK 3 4 2.9690 - 2.6976 1.00 2735 145 0.1966 0.2519 REMARK 3 5 2.6976 - 2.5043 1.00 2697 141 0.1974 0.2400 REMARK 3 6 2.5043 - 2.3567 1.00 2713 144 0.1813 0.2508 REMARK 3 7 2.3567 - 2.2387 1.00 2700 142 0.1750 0.2560 REMARK 3 8 2.2387 - 2.1412 1.00 2716 143 0.1775 0.2096 REMARK 3 9 2.1412 - 2.0588 1.00 2675 140 0.1865 0.2415 REMARK 3 10 2.0588 - 1.9878 1.00 2697 142 0.2085 0.2751 REMARK 3 11 1.9878 - 1.9256 1.00 2707 143 0.2167 0.2557 REMARK 3 12 1.9256 - 1.8706 1.00 2682 141 0.2221 0.3099 REMARK 3 13 1.8706 - 1.8213 0.95 2564 135 0.2539 0.3070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37024 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 37.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6NUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (WT/VOL) PEG 3350, 0.2 M SODIUM REMARK 280 PHOSPHATE MONOBASIC MONOHYDRATE, PH 4.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.73650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 226 REMARK 465 PHE A 227 REMARK 465 GLN A 228 REMARK 465 GLU B 20 REMARK 465 ASP B 21 REMARK 465 ILE B 22 REMARK 465 PHE B 227 REMARK 465 GLN B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CB CG CD OE1 OE2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 ARG A 85 NE CZ NH1 NH2 REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 ARG A 173 CD NE CZ NH1 NH2 REMARK 470 LYS A 183 CE NZ REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS B 108 CD CE NZ REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 3 O3' PED C 4 P -0.074 REMARK 500 PED D 4 O3' DG D 5 P -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 PED C 4 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG D 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 PED D 4 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 153.27 174.30 REMARK 500 GLN A 154 -126.64 42.41 REMARK 500 LEU A 223 -74.75 -71.48 REMARK 500 ARG B 4 138.16 -170.81 REMARK 500 GLN B 154 -128.99 38.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 8D2M A 2 222 UNP P76318 YEDK_ECOLI 2 222 DBREF 8D2M C 1 7 PDB 8D2M 8D2M 1 7 DBREF 8D2M B 2 222 UNP P76318 YEDK_ECOLI 2 222 DBREF 8D2M D 1 7 PDB 8D2M 8D2M 1 7 SEQADV 8D2M ALA A 2 UNP P76318 CYS 2 ENGINEERED MUTATION SEQADV 8D2M LEU A 223 UNP P76318 EXPRESSION TAG SEQADV 8D2M GLU A 224 UNP P76318 EXPRESSION TAG SEQADV 8D2M VAL A 225 UNP P76318 EXPRESSION TAG SEQADV 8D2M LEU A 226 UNP P76318 EXPRESSION TAG SEQADV 8D2M PHE A 227 UNP P76318 EXPRESSION TAG SEQADV 8D2M GLN A 228 UNP P76318 EXPRESSION TAG SEQADV 8D2M ALA B 2 UNP P76318 CYS 2 ENGINEERED MUTATION SEQADV 8D2M LEU B 223 UNP P76318 EXPRESSION TAG SEQADV 8D2M GLU B 224 UNP P76318 EXPRESSION TAG SEQADV 8D2M VAL B 225 UNP P76318 EXPRESSION TAG SEQADV 8D2M LEU B 226 UNP P76318 EXPRESSION TAG SEQADV 8D2M PHE B 227 UNP P76318 EXPRESSION TAG SEQADV 8D2M GLN B 228 UNP P76318 EXPRESSION TAG SEQRES 1 A 227 ALA GLY ARG PHE ALA GLN SER GLN THR ARG GLU ASP TYR SEQRES 2 A 227 LEU ALA LEU LEU ALA GLU ASP ILE GLU ARG ASP ILE PRO SEQRES 3 A 227 TYR ASP PRO GLU PRO ILE GLY ARG TYR ASN VAL ALA PRO SEQRES 4 A 227 GLY THR LYS VAL LEU LEU LEU SER GLU ARG ASP GLU HIS SEQRES 5 A 227 LEU HIS LEU ASP PRO VAL PHE TRP GLY TYR ALA PRO GLY SEQRES 6 A 227 TRP TRP ASP LYS PRO PRO LEU ILE ASN ALA ARG VAL GLU SEQRES 7 A 227 THR ALA ALA THR SER ARG MET PHE LYS PRO LEU TRP GLN SEQRES 8 A 227 HIS GLY ARG ALA ILE CYS PHE ALA ASP GLY TRP PHE GLU SEQRES 9 A 227 TRP LYS LYS GLU GLY ASP LYS LYS GLN PRO PHE PHE ILE SEQRES 10 A 227 TYR ARG ALA ASP GLY GLN PRO ILE PHE MET ALA ALA ILE SEQRES 11 A 227 GLY SER THR PRO PHE GLU ARG GLY ASP GLU ALA GLU GLY SEQRES 12 A 227 PHE LEU ILE VAL THR ALA ALA ALA ASP GLN GLY LEU VAL SEQRES 13 A 227 ASP ILE HIS ASP ARG ARG PRO LEU VAL LEU SER PRO GLU SEQRES 14 A 227 ALA ALA ARG GLU TRP MET ARG GLN GLU ILE SER GLY LYS SEQRES 15 A 227 GLU ALA SER GLU ILE ALA ALA SER GLY CYS VAL PRO ALA SEQRES 16 A 227 ASN GLN PHE SER TRP HIS PRO VAL SER ARG ALA VAL GLY SEQRES 17 A 227 ASN VAL LYS ASN GLN GLY ALA GLU LEU ILE GLN PRO VAL SEQRES 18 A 227 LEU GLU VAL LEU PHE GLN SEQRES 1 C 7 DG DT DC PED DG DG DA SEQRES 1 B 227 ALA GLY ARG PHE ALA GLN SER GLN THR ARG GLU ASP TYR SEQRES 2 B 227 LEU ALA LEU LEU ALA GLU ASP ILE GLU ARG ASP ILE PRO SEQRES 3 B 227 TYR ASP PRO GLU PRO ILE GLY ARG TYR ASN VAL ALA PRO SEQRES 4 B 227 GLY THR LYS VAL LEU LEU LEU SER GLU ARG ASP GLU HIS SEQRES 5 B 227 LEU HIS LEU ASP PRO VAL PHE TRP GLY TYR ALA PRO GLY SEQRES 6 B 227 TRP TRP ASP LYS PRO PRO LEU ILE ASN ALA ARG VAL GLU SEQRES 7 B 227 THR ALA ALA THR SER ARG MET PHE LYS PRO LEU TRP GLN SEQRES 8 B 227 HIS GLY ARG ALA ILE CYS PHE ALA ASP GLY TRP PHE GLU SEQRES 9 B 227 TRP LYS LYS GLU GLY ASP LYS LYS GLN PRO PHE PHE ILE SEQRES 10 B 227 TYR ARG ALA ASP GLY GLN PRO ILE PHE MET ALA ALA ILE SEQRES 11 B 227 GLY SER THR PRO PHE GLU ARG GLY ASP GLU ALA GLU GLY SEQRES 12 B 227 PHE LEU ILE VAL THR ALA ALA ALA ASP GLN GLY LEU VAL SEQRES 13 B 227 ASP ILE HIS ASP ARG ARG PRO LEU VAL LEU SER PRO GLU SEQRES 14 B 227 ALA ALA ARG GLU TRP MET ARG GLN GLU ILE SER GLY LYS SEQRES 15 B 227 GLU ALA SER GLU ILE ALA ALA SER GLY CYS VAL PRO ALA SEQRES 16 B 227 ASN GLN PHE SER TRP HIS PRO VAL SER ARG ALA VAL GLY SEQRES 17 B 227 ASN VAL LYS ASN GLN GLY ALA GLU LEU ILE GLN PRO VAL SEQRES 18 B 227 LEU GLU VAL LEU PHE GLN SEQRES 1 D 7 DG DT DC PED DG DG DA HET PED C 4 19 HET PED D 4 19 HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE FORMUL 2 PED 2(C5 H13 O6 P) FORMUL 5 HOH *160(H2 O) HELIX 1 AA1 THR A 10 ALA A 16 1 7 HELIX 2 AA2 ALA A 19 ILE A 26 1 8 HELIX 3 AA3 PHE A 87 GLY A 94 1 8 HELIX 4 AA4 PRO A 135 GLY A 139 5 5 HELIX 5 AA5 ASP A 153 ILE A 159 5 7 HELIX 6 AA6 SER A 168 ARG A 177 1 10 HELIX 7 AA7 SER A 181 GLY A 192 1 12 HELIX 8 AA8 PRO A 195 ASN A 197 5 3 HELIX 9 AA9 SER A 205 ASN A 210 5 6 HELIX 10 AB1 GLY A 215 GLN A 220 5 6 HELIX 11 AB2 THR B 10 ALA B 16 1 7 HELIX 12 AB3 PHE B 87 GLY B 94 1 8 HELIX 13 AB4 PRO B 135 GLY B 139 5 5 HELIX 14 AB5 ASP B 153 ILE B 159 5 7 HELIX 15 AB6 SER B 168 ARG B 177 1 10 HELIX 16 AB7 SER B 181 CYS B 193 1 13 HELIX 17 AB8 PRO B 195 ASN B 197 5 3 HELIX 18 AB9 SER B 205 ASN B 210 5 6 HELIX 19 AC1 GLY B 215 GLN B 220 5 6 SHEET 1 AA1 5 ARG A 35 VAL A 38 0 SHEET 2 AA1 5 PHE A 5 GLN A 7 -1 N GLN A 7 O ARG A 35 SHEET 3 AA1 5 GLY A 102 LYS A 107 -1 O GLY A 102 N ALA A 6 SHEET 4 AA1 5 GLN A 114 ARG A 120 -1 O ILE A 118 N TRP A 103 SHEET 5 AA1 5 PHE A 199 PRO A 203 -1 O SER A 200 N TYR A 119 SHEET 1 AA2 2 LYS A 43 ARG A 50 0 SHEET 2 AA2 2 HIS A 53 PHE A 60 -1 O HIS A 55 N SER A 48 SHEET 1 AA3 4 ASN A 75 ARG A 77 0 SHEET 2 AA3 4 PHE A 145 ALA A 151 1 O THR A 149 N ALA A 76 SHEET 3 AA3 4 ILE A 126 GLY A 132 -1 N ILE A 131 O LEU A 146 SHEET 4 AA3 4 ARG A 162 PRO A 164 0 SHEET 1 AA4 4 ARG A 95 ALA A 100 0 SHEET 2 AA4 4 ILE A 126 GLY A 132 -1 O MET A 128 N CYS A 98 SHEET 3 AA4 4 PHE A 145 ALA A 151 -1 O LEU A 146 N ILE A 131 SHEET 4 AA4 4 VAL A 166 LEU A 167 0 SHEET 1 AA5 5 ARG B 35 VAL B 38 0 SHEET 2 AA5 5 PHE B 5 GLN B 7 -1 N GLN B 7 O ARG B 35 SHEET 3 AA5 5 GLY B 102 GLU B 109 -1 O GLY B 102 N ALA B 6 SHEET 4 AA5 5 LYS B 112 ARG B 120 -1 O ILE B 118 N TRP B 103 SHEET 5 AA5 5 PHE B 199 PRO B 203 -1 O SER B 200 N TYR B 119 SHEET 1 AA6 2 LYS B 43 ARG B 50 0 SHEET 2 AA6 2 HIS B 53 PHE B 60 -1 O HIS B 55 N SER B 48 SHEET 1 AA7 4 ASN B 75 ARG B 77 0 SHEET 2 AA7 4 PHE B 145 ALA B 151 1 O THR B 149 N ALA B 76 SHEET 3 AA7 4 ILE B 126 GLY B 132 -1 N ILE B 131 O LEU B 146 SHEET 4 AA7 4 ARG B 162 PRO B 164 0 SHEET 1 AA8 4 ARG B 95 ALA B 100 0 SHEET 2 AA8 4 ILE B 126 GLY B 132 -1 O ALA B 130 N ALA B 96 SHEET 3 AA8 4 PHE B 145 ALA B 151 -1 O LEU B 146 N ILE B 131 SHEET 4 AA8 4 VAL B 166 LEU B 167 0 LINK N ALA A 2 C1' PED C 4 1555 1555 1.56 LINK O3' DC C 3 P PED C 4 1555 1555 1.53 LINK O3' PED C 4 P DG C 5 1555 1555 1.58 LINK N ALA B 2 C1' PED D 4 1555 1555 1.52 LINK O3' DC D 3 P PED D 4 1555 1555 1.55 LINK O3' PED D 4 P DG D 5 1555 1555 1.51 CISPEP 1 THR A 134 PRO A 135 0 -1.40 CISPEP 2 THR B 134 PRO B 135 0 0.48 CRYST1 60.940 41.473 82.580 90.00 95.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016410 0.000000 0.001624 0.00000 SCALE2 0.000000 0.024112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012169 0.00000 CONECT 1 3524 CONECT 3493 3515 CONECT 3515 3493 3516 3517 3518 CONECT 3516 3515 CONECT 3517 3515 CONECT 3518 3515 3520 CONECT 3519 3523 3524 3526 3527 CONECT 3520 3518 3521 3528 3529 CONECT 3521 3520 3522 3523 3530 CONECT 3522 3521 3531 CONECT 3523 3519 3521 3525 3532 CONECT 3524 1 3519 3533 CONECT 3525 3523 3534 CONECT 3526 3519 CONECT 3527 3519 CONECT 3528 3520 CONECT 3529 3520 CONECT 3530 3521 CONECT 3531 3522 CONECT 3532 3523 CONECT 3533 3524 CONECT 3534 3525 CONECT 3634 7153 CONECT 7122 7144 CONECT 7144 7122 7145 7146 7147 CONECT 7145 7144 CONECT 7146 7144 CONECT 7147 7144 7149 CONECT 7148 7152 7153 7155 7156 CONECT 7149 7147 7150 7157 7158 CONECT 7150 7149 7151 7152 7159 CONECT 7151 7150 7160 CONECT 7152 7148 7150 7154 7161 CONECT 7153 3634 7148 7162 CONECT 7154 7152 7163 CONECT 7155 7148 CONECT 7156 7148 CONECT 7157 7149 CONECT 7158 7149 CONECT 7159 7150 CONECT 7160 7151 CONECT 7161 7152 CONECT 7162 7153 CONECT 7163 7154 MASTER 296 0 2 19 30 0 0 6 3928 4 44 38 END