HEADER LIGASE 07-JUN-22 8D81 TITLE CEREBLON~DDB1 BOUND TO POMALIDOMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 396 THROUGH 706 DELETED, SUBSTITUTED WITH GNGNSG, COMPND 5 RESIDUES 396 THROUGH 706 DELETED, SUBSTITUTED WITH GNGNSG; COMPND 6 SYNONYM: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- COMPND 7 SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- COMPND 8 DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, COMPND 9 XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING COMPND 10 PROTEIN,XPCE; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PROTEIN CEREBLON; COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDB1, XAP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CRBN, AD-006; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CRL4, UBIQUITIN, E3, CEREBLON, LIGASE EXPDTA ELECTRON MICROSCOPY AUTHOR E.R.WATSON,G.C.LANDER REVDAT 2 01-MAR-23 8D81 1 COMPND JRNL REMARK REVDAT 1 20-JUL-22 8D81 0 JRNL AUTH E.R.WATSON,S.NOVICK,M.E.MATYSKIELA,P.P.CHAMBERLAIN, JRNL AUTH 2 A.H DE LA PENA,J.ZHU,E.TRAN,P.R.GRIFFIN,I.E.WERTZ,G.C.LANDER JRNL TITL MOLECULAR GLUE CELMOD COMPOUNDS ARE REGULATORS OF CEREBLON JRNL TITL 2 CONFORMATION. JRNL REF SCIENCE V. 378 549 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 36378961 JRNL DOI 10.1126/SCIENCE.ADD7574 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 87327 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8D81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265583. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CEREBLON~DDB1 BOUND TO REMARK 245 POMALIDOMIDE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 20.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : MANUAL PLUNGE IN 4 DEGREE C REMARK 245 COLD ROOM REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6250.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 698 REMARK 465 GLY A 699 REMARK 465 GLY A 700 REMARK 465 ASN A 701 REMARK 465 GLY A 702 REMARK 465 ASN A 703 REMARK 465 SER A 704 REMARK 465 GLY A 705 REMARK 465 GLU A 706 REMARK 465 ILE A 707 REMARK 465 GLN A 708 REMARK 465 SER A 772 REMARK 465 SER A 773 REMARK 465 SER A 774 REMARK 465 THR A 775 REMARK 465 ALA A 776 REMARK 465 PRO A 777 REMARK 465 HIS A 778 REMARK 465 GLU A 779 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 HIS B 12 REMARK 465 ASN B 13 REMARK 465 MET B 14 REMARK 465 GLY B 15 REMARK 465 ASN B 16 REMARK 465 HIS B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 MET B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 GLN B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 PRO B 44 REMARK 465 ILE B 426 REMARK 465 PRO B 427 REMARK 465 ASP B 428 REMARK 465 THR B 429 REMARK 465 GLU B 430 REMARK 465 ASP B 431 REMARK 465 GLU B 432 REMARK 465 ILE B 433 REMARK 465 SER B 434 REMARK 465 PRO B 435 REMARK 465 ASP B 436 REMARK 465 LYS B 437 REMARK 465 VAL B 438 REMARK 465 ILE B 439 REMARK 465 LEU B 440 REMARK 465 CYS B 441 REMARK 465 LEU B 442 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 ILE A 237 CG1 CG2 CD1 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 470 MET A 291 CG SD CE REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 VAL A 295 CG1 CG2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 370 CG CD OE1 NE2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LYS A 823 CG CD CE NZ REMARK 470 SER A 955 OG REMARK 470 SER A 981 OG REMARK 470 GLU A1019 CG CD OE1 OE2 REMARK 470 ASN A1111 CG OD1 ND2 REMARK 470 ASP A1116 CG OD1 OD2 REMARK 470 SER A1118 OG REMARK 470 MET A1120 CG SD CE REMARK 470 ARG A1122 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1123 CG CD OE1 OE2 REMARK 470 THR A1125 OG1 CG2 REMARK 470 LYS A1131 CG CD CE NZ REMARK 470 ASN B 45 CG OD1 ND2 REMARK 470 ILE B 46 CG1 CG2 CD1 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 HIS B 68 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 GLN B 86 CG CD OE1 NE2 REMARK 470 MET B 88 CG SD CE REMARK 470 PRO B 98 CG CD REMARK 470 MET B 109 CG SD CE REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ASN B 127 CG OD1 ND2 REMARK 470 VAL B 128 CG1 CG2 REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 PHE B 150 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 GLN B 183 CG CD OE1 NE2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 ASN B 267 CG OD1 ND2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 GLN B 325 CG CD OE1 NE2 REMARK 470 GLN B 327 CG CD OE1 NE2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 LYS B 364 CG CD CE NZ REMARK 470 LYS B 392 CG CD CE NZ REMARK 470 LYS B 413 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 98 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 -61.79 -92.75 REMARK 500 ASN A 36 -95.66 -166.35 REMARK 500 TYR A 58 57.60 -94.47 REMARK 500 ALA A 214 5.26 -67.92 REMARK 500 ASN A 241 19.40 -140.40 REMARK 500 THR A 308 -169.24 -128.85 REMARK 500 CYS A 313 118.02 -161.46 REMARK 500 PHE A 382 -118.72 59.56 REMARK 500 VAL A 729 1.00 -69.39 REMARK 500 THR A 745 49.40 -84.42 REMARK 500 ASN A 877 42.50 36.68 REMARK 500 ASN A 885 -116.48 50.53 REMARK 500 ARG A 928 -3.68 67.77 REMARK 500 SER A 929 73.18 -69.91 REMARK 500 ILE A 945 -61.62 -105.73 REMARK 500 ASP A 948 113.04 -161.43 REMARK 500 GLN A1015 55.44 -90.82 REMARK 500 GLU A1019 -91.07 51.46 REMARK 500 SER A1021 -142.08 58.02 REMARK 500 VAL A1061 -58.14 -120.02 REMARK 500 ASN A1111 34.14 -142.23 REMARK 500 LYS A1121 72.42 46.44 REMARK 500 ALA A1124 -1.71 67.91 REMARK 500 THR A1125 -154.04 50.90 REMARK 500 ILE B 47 21.21 49.59 REMARK 500 THR B 51 31.01 -97.78 REMARK 500 LEU B 72 -150.60 -136.00 REMARK 500 ASP B 75 75.16 65.27 REMARK 500 ASP B 76 71.27 78.50 REMARK 500 SER B 77 -120.72 -166.63 REMARK 500 GLN B 115 48.63 -85.57 REMARK 500 LYS B 116 -171.00 -171.53 REMARK 500 GLU B 130 61.14 62.19 REMARK 500 ASP B 149 -111.87 51.17 REMARK 500 ILE B 152 -66.95 -121.63 REMARK 500 GLU B 153 -56.37 -122.21 REMARK 500 ILE B 154 96.93 53.90 REMARK 500 ILE B 184 105.15 -55.96 REMARK 500 LEU B 202 46.31 -91.64 REMARK 500 VAL B 213 -124.17 52.63 REMARK 500 SER B 214 139.19 -171.29 REMARK 500 GLN B 218 -3.27 68.14 REMARK 500 PHE B 232 51.17 -92.80 REMARK 500 LYS B 269 -101.46 48.98 REMARK 500 ASP B 270 56.05 -93.62 REMARK 500 LYS B 324 -95.70 56.36 REMARK 500 ILE B 393 -61.97 -120.48 REMARK 500 PHE B 414 146.43 -174.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 323 SG REMARK 620 2 CYS B 326 SG 110.5 REMARK 620 3 CYS B 391 SG 110.4 110.0 REMARK 620 4 CYS B 394 SG 112.8 107.6 105.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27242 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27239 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27234 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27236 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27235 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27240 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27238 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27237 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-27241 RELATED DB: EMDB DBREF 8D81 A 1 699 UNP Q16531 DDB1_HUMAN 1 395 DBREF 8D81 A 706 1140 UNP Q16531 DDB1_HUMAN 706 1140 DBREF 8D81 B 1 442 UNP Q96SW2 CRBN_HUMAN 1 442 SEQADV 8D81 GLY A 700 UNP Q16531 LINKER SEQADV 8D81 ASN A 701 UNP Q16531 LINKER SEQADV 8D81 GLY A 702 UNP Q16531 LINKER SEQADV 8D81 ASN A 703 UNP Q16531 LINKER SEQADV 8D81 SER A 704 UNP Q16531 LINKER SEQADV 8D81 GLY A 705 UNP Q16531 LINKER SEQRES 1 A 836 MET SER TYR ASN TYR VAL VAL THR ALA GLN LYS PRO THR SEQRES 2 A 836 ALA VAL ASN GLY CYS VAL THR GLY HIS PHE THR SER ALA SEQRES 3 A 836 GLU ASP LEU ASN LEU LEU ILE ALA LYS ASN THR ARG LEU SEQRES 4 A 836 GLU ILE TYR VAL VAL THR ALA GLU GLY LEU ARG PRO VAL SEQRES 5 A 836 LYS GLU VAL GLY MET TYR GLY LYS ILE ALA VAL MET GLU SEQRES 6 A 836 LEU PHE ARG PRO LYS GLY GLU SER LYS ASP LEU LEU PHE SEQRES 7 A 836 ILE LEU THR ALA LYS TYR ASN ALA CYS ILE LEU GLU TYR SEQRES 8 A 836 LYS GLN SER GLY GLU SER ILE ASP ILE ILE THR ARG ALA SEQRES 9 A 836 HIS GLY ASN VAL GLN ASP ARG ILE GLY ARG PRO SER GLU SEQRES 10 A 836 THR GLY ILE ILE GLY ILE ILE ASP PRO GLU CYS ARG MET SEQRES 11 A 836 ILE GLY LEU ARG LEU TYR ASP GLY LEU PHE LYS VAL ILE SEQRES 12 A 836 PRO LEU ASP ARG ASP ASN LYS GLU LEU LYS ALA PHE ASN SEQRES 13 A 836 ILE ARG LEU GLU GLU LEU HIS VAL ILE ASP VAL LYS PHE SEQRES 14 A 836 LEU TYR GLY CYS GLN ALA PRO THR ILE CYS PHE VAL TYR SEQRES 15 A 836 GLN ASP PRO GLN GLY ARG HIS VAL LYS THR TYR GLU VAL SEQRES 16 A 836 SER LEU ARG GLU LYS GLU PHE ASN LYS GLY PRO TRP LYS SEQRES 17 A 836 GLN GLU ASN VAL GLU ALA GLU ALA SER MET VAL ILE ALA SEQRES 18 A 836 VAL PRO GLU PRO PHE GLY GLY ALA ILE ILE ILE GLY GLN SEQRES 19 A 836 GLU SER ILE THR TYR HIS ASN GLY ASP LYS TYR LEU ALA SEQRES 20 A 836 ILE ALA PRO PRO ILE ILE LYS GLN SER THR ILE VAL CYS SEQRES 21 A 836 HIS ASN ARG VAL ASP PRO ASN GLY SER ARG TYR LEU LEU SEQRES 22 A 836 GLY ASP MET GLU GLY ARG LEU PHE MET LEU LEU LEU GLU SEQRES 23 A 836 LYS GLU GLU GLN MET ASP GLY THR VAL THR LEU LYS ASP SEQRES 24 A 836 LEU ARG VAL GLU LEU LEU GLY GLU THR SER ILE ALA GLU SEQRES 25 A 836 CYS LEU THR TYR LEU ASP ASN GLY VAL VAL PHE VAL GLY SEQRES 26 A 836 SER ARG LEU GLY ASP SER GLN LEU VAL LYS LEU ASN VAL SEQRES 27 A 836 ASP SER ASN GLU GLN GLY SER TYR VAL VAL ALA MET GLU SEQRES 28 A 836 THR PHE THR ASN LEU GLY PRO ILE VAL ASP MET CYS VAL SEQRES 29 A 836 VAL ASP LEU GLU ARG GLN GLY GLN GLY GLN LEU VAL THR SEQRES 30 A 836 CYS SER GLY ALA PHE LYS GLU GLY SER LEU ARG ILE ILE SEQRES 31 A 836 ARG ASN GLY ILE GLY GLY ASN GLY ASN SER GLY GLU ILE SEQRES 32 A 836 GLN LYS LEU HIS ILE ARG THR VAL PRO LEU TYR GLU SER SEQRES 33 A 836 PRO ARG LYS ILE CYS TYR GLN GLU VAL SER GLN CYS PHE SEQRES 34 A 836 GLY VAL LEU SER SER ARG ILE GLU VAL GLN ASP THR SER SEQRES 35 A 836 GLY GLY THR THR ALA LEU ARG PRO SER ALA SER THR GLN SEQRES 36 A 836 ALA LEU SER SER SER VAL SER SER SER LYS LEU PHE SER SEQRES 37 A 836 SER SER THR ALA PRO HIS GLU THR SER PHE GLY GLU GLU SEQRES 38 A 836 VAL GLU VAL HIS ASN LEU LEU ILE ILE ASP GLN HIS THR SEQRES 39 A 836 PHE GLU VAL LEU HIS ALA HIS GLN PHE LEU GLN ASN GLU SEQRES 40 A 836 TYR ALA LEU SER LEU VAL SER CYS LYS LEU GLY LYS ASP SEQRES 41 A 836 PRO ASN THR TYR PHE ILE VAL GLY THR ALA MET VAL TYR SEQRES 42 A 836 PRO GLU GLU ALA GLU PRO LYS GLN GLY ARG ILE VAL VAL SEQRES 43 A 836 PHE GLN TYR SER ASP GLY LYS LEU GLN THR VAL ALA GLU SEQRES 44 A 836 LYS GLU VAL LYS GLY ALA VAL TYR SER MET VAL GLU PHE SEQRES 45 A 836 ASN GLY LYS LEU LEU ALA SER ILE ASN SER THR VAL ARG SEQRES 46 A 836 LEU TYR GLU TRP THR THR GLU LYS GLU LEU ARG THR GLU SEQRES 47 A 836 CYS ASN HIS TYR ASN ASN ILE MET ALA LEU TYR LEU LYS SEQRES 48 A 836 THR LYS GLY ASP PHE ILE LEU VAL GLY ASP LEU MET ARG SEQRES 49 A 836 SER VAL LEU LEU LEU ALA TYR LYS PRO MET GLU GLY ASN SEQRES 50 A 836 PHE GLU GLU ILE ALA ARG ASP PHE ASN PRO ASN TRP MET SEQRES 51 A 836 SER ALA VAL GLU ILE LEU ASP ASP ASP ASN PHE LEU GLY SEQRES 52 A 836 ALA GLU ASN ALA PHE ASN LEU PHE VAL CYS GLN LYS ASP SEQRES 53 A 836 SER ALA ALA THR THR ASP GLU GLU ARG GLN HIS LEU GLN SEQRES 54 A 836 GLU VAL GLY LEU PHE HIS LEU GLY GLU PHE VAL ASN VAL SEQRES 55 A 836 PHE CYS HIS GLY SER LEU VAL MET GLN ASN LEU GLY GLU SEQRES 56 A 836 THR SER THR PRO THR GLN GLY SER VAL LEU PHE GLY THR SEQRES 57 A 836 VAL ASN GLY MET ILE GLY LEU VAL THR SER LEU SER GLU SEQRES 58 A 836 SER TRP TYR ASN LEU LEU LEU ASP MET GLN ASN ARG LEU SEQRES 59 A 836 ASN LYS VAL ILE LYS SER VAL GLY LYS ILE GLU HIS SER SEQRES 60 A 836 PHE TRP ARG SER PHE HIS THR GLU ARG LYS THR GLU PRO SEQRES 61 A 836 ALA THR GLY PHE ILE ASP GLY ASP LEU ILE GLU SER PHE SEQRES 62 A 836 LEU ASP ILE SER ARG PRO LYS MET GLN GLU VAL VAL ALA SEQRES 63 A 836 ASN LEU GLN TYR ASP ASP GLY SER GLY MET LYS ARG GLU SEQRES 64 A 836 ALA THR ALA ASP ASP LEU ILE LYS VAL VAL GLU GLU LEU SEQRES 65 A 836 THR ARG ILE HIS SEQRES 1 B 442 MET ALA GLY GLU GLY ASP GLN GLN ASP ALA ALA HIS ASN SEQRES 2 B 442 MET GLY ASN HIS LEU PRO LEU LEU PRO ALA GLU SER GLU SEQRES 3 B 442 GLU GLU ASP GLU MET GLU VAL GLU ASP GLN ASP SER LYS SEQRES 4 B 442 GLU ALA LYS LYS PRO ASN ILE ILE ASN PHE ASP THR SER SEQRES 5 B 442 LEU PRO THR SER HIS THR TYR LEU GLY ALA ASP MET GLU SEQRES 6 B 442 GLU PHE HIS GLY ARG THR LEU HIS ASP ASP ASP SER CYS SEQRES 7 B 442 GLN VAL ILE PRO VAL LEU PRO GLN VAL MET MET ILE LEU SEQRES 8 B 442 ILE PRO GLY GLN THR LEU PRO LEU GLN LEU PHE HIS PRO SEQRES 9 B 442 GLN GLU VAL SER MET VAL ARG ASN LEU ILE GLN LYS ASP SEQRES 10 B 442 ARG THR PHE ALA VAL LEU ALA TYR SER ASN VAL GLN GLU SEQRES 11 B 442 ARG GLU ALA GLN PHE GLY THR THR ALA GLU ILE TYR ALA SEQRES 12 B 442 TYR ARG GLU GLU GLN ASP PHE GLY ILE GLU ILE VAL LYS SEQRES 13 B 442 VAL LYS ALA ILE GLY ARG GLN ARG PHE LYS VAL LEU GLU SEQRES 14 B 442 LEU ARG THR GLN SER ASP GLY ILE GLN GLN ALA LYS VAL SEQRES 15 B 442 GLN ILE LEU PRO GLU CYS VAL LEU PRO SER THR MET SER SEQRES 16 B 442 ALA VAL GLN LEU GLU SER LEU ASN LYS CYS GLN ILE PHE SEQRES 17 B 442 PRO SER LYS PRO VAL SER ARG GLU ASP GLN CYS SER TYR SEQRES 18 B 442 LYS TRP TRP GLN LYS TYR GLN LYS ARG LYS PHE HIS CYS SEQRES 19 B 442 ALA ASN LEU THR SER TRP PRO ARG TRP LEU TYR SER LEU SEQRES 20 B 442 TYR ASP ALA GLU THR LEU MET ASP ARG ILE LYS LYS GLN SEQRES 21 B 442 LEU ARG GLU TRP ASP GLU ASN LEU LYS ASP ASP SER LEU SEQRES 22 B 442 PRO SER ASN PRO ILE ASP PHE SER TYR ARG VAL ALA ALA SEQRES 23 B 442 CYS LEU PRO ILE ASP ASP VAL LEU ARG ILE GLN LEU LEU SEQRES 24 B 442 LYS ILE GLY SER ALA ILE GLN ARG LEU ARG CYS GLU LEU SEQRES 25 B 442 ASP ILE MET ASN LYS CYS THR SER LEU CYS CYS LYS GLN SEQRES 26 B 442 CYS GLN GLU THR GLU ILE THR THR LYS ASN GLU ILE PHE SEQRES 27 B 442 SER LEU SER LEU CYS GLY PRO MET ALA ALA TYR VAL ASN SEQRES 28 B 442 PRO HIS GLY TYR VAL HIS GLU THR LEU THR VAL TYR LYS SEQRES 29 B 442 ALA CYS ASN LEU ASN LEU ILE GLY ARG PRO SER THR GLU SEQRES 30 B 442 HIS SER TRP PHE PRO GLY TYR ALA TRP THR VAL ALA GLN SEQRES 31 B 442 CYS LYS ILE CYS ALA SER HIS ILE GLY TRP LYS PHE THR SEQRES 32 B 442 ALA THR LYS LYS ASP MET SER PRO GLN LYS PHE TRP GLY SEQRES 33 B 442 LEU THR ARG SER ALA LEU LEU PRO THR ILE PRO ASP THR SEQRES 34 B 442 GLU ASP GLU ILE SER PRO ASP LYS VAL ILE LEU CYS LEU HET ZN B 501 1 HET Y70 B 502 20 HETNAM ZN ZINC ION HETNAM Y70 S-POMALIDOMIDE FORMUL 3 ZN ZN 2+ FORMUL 4 Y70 C13 H11 N3 O4 HELIX 1 AA1 PRO A 251 GLN A 255 5 5 HELIX 2 AA2 LEU A 317 ASN A 319 5 3 HELIX 3 AA3 ALA A 381 GLU A 384 5 4 HELIX 4 AA4 THR A 985 GLN A 990 1 6 HELIX 5 AA5 SER A 1044 ASN A 1059 1 16 HELIX 6 AA6 SER A 1064 ILE A 1068 5 5 HELIX 7 AA7 GLU A 1069 SER A 1075 1 7 HELIX 8 AA8 GLY A 1091 SER A 1096 1 6 HELIX 9 AA9 PHE A 1097 ILE A 1100 5 4 HELIX 10 AB1 SER A 1101 VAL A 1109 1 9 HELIX 11 AB2 ALA A 1126 ARG A 1138 1 13 HELIX 12 AB3 SER B 52 HIS B 57 1 6 HELIX 13 AB4 THR B 58 GLY B 61 5 4 HELIX 14 AB5 HIS B 103 GLN B 115 1 13 HELIX 15 AB6 SER B 220 PHE B 232 1 13 HELIX 16 AB7 HIS B 233 LEU B 237 5 5 HELIX 17 AB8 PRO B 241 TYR B 248 1 8 HELIX 18 AB9 ALA B 250 ASP B 265 1 16 HELIX 19 AC1 ASN B 276 CYS B 287 1 12 HELIX 20 AC2 ASP B 291 ILE B 301 1 11 HELIX 21 AC3 SER B 303 CYS B 318 1 16 HELIX 22 AC4 THR B 329 THR B 333 5 5 SHEET 1 AA1 5 VAL A1004 HIS A1009 0 SHEET 2 AA1 5 GLN A1025 THR A1032 -1 O LEU A1029 N CYS A1008 SHEET 3 AA1 5 ILE A1037 SER A1042 -1 O VAL A1040 N VAL A1028 SHEET 4 AA1 5 ASN A 4 GLN A 10 -1 N ALA A 9 O ILE A1037 SHEET 5 AA1 5 PHE A1088 ASP A1090 1 O ILE A1089 N ASN A 4 SHEET 1 AA2 4 CYS A 18 GLY A 21 0 SHEET 2 AA2 4 ASN A 30 ALA A 34 -1 O LEU A 32 N VAL A 19 SHEET 3 AA2 4 ARG A 38 VAL A 44 -1 O GLU A 40 N ILE A 33 SHEET 4 AA2 4 LEU A 49 GLY A 56 -1 O VAL A 55 N LEU A 39 SHEET 1 AA3 4 ILE A 61 PHE A 67 0 SHEET 2 AA3 4 LEU A 76 THR A 81 -1 O LEU A 80 N ALA A 62 SHEET 3 AA3 4 ASN A 85 LYS A 92 -1 O LEU A 89 N LEU A 77 SHEET 4 AA3 4 ASP A 99 ASN A 107 -1 O ARG A 103 N ILE A 88 SHEET 1 AA4 3 GLY A 122 ILE A 124 0 SHEET 2 AA4 3 MET A 130 LEU A 133 -1 O GLY A 132 N ILE A 123 SHEET 3 AA4 3 VAL A 142 PRO A 144 -1 O ILE A 143 N ILE A 131 SHEET 1 AA5 4 VAL A 164 PHE A 169 0 SHEET 2 AA5 4 ILE A 178 ASP A 184 -1 O VAL A 181 N ILE A 165 SHEET 3 AA5 4 GLY A 187 TYR A 193 -1 O LYS A 191 N PHE A 180 SHEET 4 AA5 4 GLU A 210 ASN A 211 -1 O GLU A 210 N VAL A 190 SHEET 1 AA6 2 MET A 218 ALA A 221 0 SHEET 2 AA6 2 ALA A 229 ILE A 232 -1 O ILE A 230 N ILE A 220 SHEET 1 AA7 2 ILE A 237 HIS A 240 0 SHEET 2 AA7 2 TYR A 245 ILE A 248 -1 O ILE A 248 N ILE A 237 SHEET 1 AA8 4 ILE A 258 ARG A 263 0 SHEET 2 AA8 4 ARG A 270 ASP A 275 -1 O GLY A 274 N CYS A 260 SHEET 3 AA8 4 ARG A 279 LEU A 284 -1 O LEU A 283 N TYR A 271 SHEET 4 AA8 4 VAL A 302 GLU A 307 -1 O GLY A 306 N LEU A 280 SHEET 1 AA9 2 GLU A 289 GLN A 290 0 SHEET 2 AA9 2 VAL A 295 THR A 296 -1 O THR A 296 N GLU A 289 SHEET 1 AB1 3 VAL A 321 VAL A 322 0 SHEET 2 AB1 3 SER A 331 LEU A 336 -1 O VAL A 334 N VAL A 322 SHEET 3 AB1 3 VAL A 347 PHE A 353 -1 O VAL A 348 N LYS A 335 SHEET 1 AB2 4 MET A 362 VAL A 365 0 SHEET 2 AB2 4 GLN A 374 SER A 379 -1 O VAL A 376 N CYS A 363 SHEET 3 AB2 4 SER A 386 ILE A 390 -1 O ARG A 388 N THR A 377 SHEET 4 AB2 4 ILE A 712 PRO A 716 -1 O VAL A 715 N LEU A 387 SHEET 1 AB3 5 SER A 720 GLN A 727 0 SHEET 2 AB3 5 CYS A 732 VAL A 742 -1 O GLY A 734 N CYS A 725 SHEET 3 AB3 5 GLU A 785 ASP A 795 -1 O ILE A 794 N PHE A 733 SHEET 4 AB3 5 VAL A 801 GLN A 806 -1 O HIS A 805 N LEU A 791 SHEET 5 AB3 5 SER A 764 VAL A 765 1 N SER A 764 O ALA A 804 SHEET 1 AB4 4 GLU A 811 CYS A 819 0 SHEET 2 AB4 4 TYR A 828 MET A 835 -1 O GLY A 832 N LEU A 814 SHEET 3 AB4 4 GLY A 846 PHE A 851 -1 O PHE A 851 N PHE A 829 SHEET 4 AB4 4 THR A 860 VAL A 866 -1 O VAL A 866 N GLY A 846 SHEET 1 AB5 4 VAL A 870 PHE A 876 0 SHEET 2 AB5 4 LYS A 879 ILE A 884 -1 O LYS A 879 N PHE A 876 SHEET 3 AB5 4 THR A 887 TRP A 893 -1 O TYR A 891 N LEU A 880 SHEET 4 AB5 4 LEU A 899 TYR A 906 -1 O ARG A 900 N GLU A 892 SHEET 1 AB6 4 LEU A 914 LYS A 917 0 SHEET 2 AB6 4 PHE A 920 VAL A 923 -1 O LEU A 922 N LYS A 915 SHEET 3 AB6 4 LEU A 931 TYR A 935 -1 O LEU A 933 N ILE A 921 SHEET 4 AB6 4 PHE A 942 ARG A 947 -1 O GLU A 943 N ALA A 934 SHEET 1 AB7 4 VAL A 957 ILE A 959 0 SHEET 2 AB7 4 PHE A 965 GLU A 969 -1 O LEU A 966 N GLU A 958 SHEET 3 AB7 4 ASN A 973 GLN A 978 -1 O CYS A 977 N PHE A 965 SHEET 4 AB7 4 GLN A 993 HIS A 999 -1 O PHE A 998 N LEU A 974 SHEET 1 AB8 4 GLU B 65 GLU B 66 0 SHEET 2 AB8 4 ALA B 133 TYR B 144 -1 O TYR B 144 N GLU B 65 SHEET 3 AB8 4 VAL B 157 VAL B 167 -1 O ILE B 160 N GLU B 140 SHEET 4 AB8 4 THR B 96 LEU B 99 -1 N LEU B 97 O ALA B 159 SHEET 1 AB9 5 GLN B 79 PRO B 82 0 SHEET 2 AB9 5 GLN B 179 ILE B 184 -1 O VAL B 182 N GLN B 79 SHEET 3 AB9 5 VAL B 157 VAL B 167 -1 N LYS B 166 O GLN B 183 SHEET 4 AB9 5 ALA B 133 TYR B 144 -1 N GLU B 140 O ILE B 160 SHEET 5 AB9 5 PHE B 120 TYR B 125 -1 N ALA B 124 O PHE B 135 SHEET 1 AC1 2 LEU B 321 CYS B 322 0 SHEET 2 AC1 2 LEU B 423 PRO B 424 -1 O LEU B 423 N CYS B 322 SHEET 1 AC2 2 ALA B 348 ASN B 351 0 SHEET 2 AC2 2 GLY B 354 GLU B 358 -1 O HIS B 357 N TYR B 349 SHEET 1 AC3 2 THR B 361 VAL B 362 0 SHEET 2 AC3 2 TRP B 415 GLY B 416 -1 N TRP B 415 O VAL B 362 SHEET 1 AC4 3 LEU B 368 LEU B 370 0 SHEET 2 AC4 3 ALA B 385 CYS B 391 -1 O GLN B 390 N ASN B 369 SHEET 3 AC4 3 TRP B 400 THR B 403 -1 O LYS B 401 N THR B 387 LINK SG CYS B 323 ZN ZN B 501 1555 1555 2.34 LINK SG CYS B 326 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 391 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 394 ZN ZN B 501 1555 1555 2.33 CISPEP 1 GLU A 224 PRO A 225 0 0.37 CISPEP 2 GLY A 357 PRO A 358 0 -2.83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000