HEADER HYDROLASE/INHIBITOR 09-JUN-22 8D9A TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 2 COMPLEXED WITH FLUORINATED INHIBITOR 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HDAC6 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE DEACETYLASE 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HISTONE DEACETYLASE, INHIBITOR, METALLOHYDROLASE, KEYWDS 2 HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.R.WATSON,D.W.CHRISTIANSON REVDAT 3 18-OCT-23 8D9A 1 REMARK REVDAT 2 05-OCT-22 8D9A 1 JRNL REVDAT 1 28-SEP-22 8D9A 0 JRNL AUTH P.R.WATSON,P.BAI,C.WANG,A.D.CRAGIN,J.M.HOOKER, JRNL AUTH 2 D.W.CHRISTIANSON JRNL TITL AROMATIC RING FLUORINATION PATTERNS MODULATE INHIBITORY JRNL TITL 2 POTENCY OF FLUOROPHENYLHYDROXAMATES COMPLEXED WITH HISTONE JRNL TITL 3 DEACETYLASE 6. JRNL REF BIOCHEMISTRY V. 61 1945 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 36073962 JRNL DOI 10.1021/ACS.BIOCHEM.2C00332 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 67707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.5100 - 4.2100 1.00 4976 152 0.1526 0.1865 REMARK 3 2 4.2100 - 3.3400 1.00 4817 149 0.1566 0.1603 REMARK 3 3 3.3400 - 2.9200 1.00 4746 144 0.1906 0.2396 REMARK 3 4 2.9200 - 2.6500 1.00 4736 145 0.1957 0.2197 REMARK 3 5 2.6500 - 2.4600 1.00 4703 146 0.1875 0.2330 REMARK 3 6 2.4600 - 2.3200 1.00 4696 137 0.1846 0.2248 REMARK 3 7 2.3200 - 2.2000 1.00 4677 148 0.1910 0.2341 REMARK 3 8 2.2000 - 2.1100 0.99 4668 139 0.2026 0.2459 REMARK 3 9 2.1100 - 2.0200 1.00 4664 137 0.1955 0.2572 REMARK 3 10 2.0200 - 1.9500 1.00 4675 143 0.1956 0.2475 REMARK 3 11 1.9500 - 1.8900 1.00 4642 158 0.2027 0.2399 REMARK 3 12 1.8900 - 1.8400 1.00 4648 128 0.2157 0.2560 REMARK 3 13 1.8400 - 1.7900 1.00 4653 142 0.2303 0.2633 REMARK 3 14 1.7900 - 1.7500 0.95 4408 130 0.2560 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.202 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.855 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5665 REMARK 3 ANGLE : 0.899 7719 REMARK 3 CHIRALITY : 0.055 849 REMARK 3 PLANARITY : 0.009 1012 REMARK 3 DIHEDRAL : 23.513 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 447487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 96.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5EEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML HDAC6 PROTEIN, 0.09 M BIS-TRIS REMARK 280 (PH 6.0), 0.18 M KSCN, 18% PEG 3350, 0.3% ETHANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.51750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.02200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.51750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.02200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 435 REMARK 465 ASN A 436 REMARK 465 ALA A 437 REMARK 465 GLY A 438 REMARK 465 GLY A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 HIS A 771 REMARK 465 LEU A 772 REMARK 465 ARG A 798 REMARK 465 SER B 435 REMARK 465 ASN B 436 REMARK 465 ALA B 437 REMARK 465 GLY B 438 REMARK 465 GLY B 439 REMARK 465 SER B 440 REMARK 465 SER B 441 REMARK 465 HIS B 771 REMARK 465 LEU B 772 REMARK 465 ARG B 798 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 450 CG CD OE1 NE2 REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 SER A 509 OG REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 LYS A 577 CD CE NZ REMARK 470 GLU A 602 CG CD OE1 OE2 REMARK 470 LYS A 658 CD CE NZ REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 GLU A 752 CG CD OE1 OE2 REMARK 470 SER A 768 OG REMARK 470 ASP A 770 CG OD1 OD2 REMARK 470 GLU B 497 CG CD OE1 OE2 REMARK 470 LYS B 518 CG CD CE NZ REMARK 470 ARG B 520 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 524 CD NE CZ NH1 NH2 REMARK 470 ARG B 562 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 658 CG CD CE NZ REMARK 470 LYS B 672 CG CD CE NZ REMARK 470 ARG B 788 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 749 CA CB OG REMARK 480 SER B 749 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 531 63.29 62.03 REMARK 500 THR A 600 -95.82 -125.00 REMARK 500 LEU A 685 -66.00 -124.20 REMARK 500 GLN A 716 41.60 -141.67 REMARK 500 GLU A 742 -110.40 -110.80 REMARK 500 SER B 531 60.91 61.85 REMARK 500 THR B 600 -92.85 -125.24 REMARK 500 ASN B 645 34.82 70.92 REMARK 500 LEU B 685 -64.49 -123.91 REMARK 500 GLN B 716 40.40 -140.52 REMARK 500 GLU B 742 -107.59 -113.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1120 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 71.2 REMARK 620 3 ASP A 612 O 98.4 96.3 REMARK 620 4 HIS A 614 O 162.4 91.6 79.3 REMARK 620 5 SER A 633 OG 85.8 110.6 152.6 104.2 REMARK 620 6 LEU A 634 O 78.5 143.8 68.8 116.1 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 100.6 REMARK 620 3 ASP A 705 OD2 104.2 96.9 REMARK 620 4 QHO A 801 N05 121.6 80.4 134.0 REMARK 620 5 QHO A 801 O06 98.0 107.1 143.6 32.5 REMARK 620 6 QHO A 801 O07 166.3 89.5 83.5 50.7 70.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 804 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 79.9 REMARK 620 3 VAL A 629 O 119.8 80.8 REMARK 620 4 TYR A 662 O 153.4 113.6 85.8 REMARK 620 5 HOH A 942 O 81.2 85.8 152.1 77.3 REMARK 620 6 HOH A1008 O 66.7 145.8 121.3 95.0 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 610 O REMARK 620 2 ASP B 610 OD1 71.0 REMARK 620 3 ASP B 612 O 98.3 96.4 REMARK 620 4 HIS B 614 O 164.9 94.1 80.4 REMARK 620 5 SER B 633 OG 85.1 110.8 152.0 103.3 REMARK 620 6 LEU B 634 O 77.8 142.9 68.4 115.0 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 612 OD1 REMARK 620 2 HIS B 614 ND1 102.0 REMARK 620 3 ASP B 705 OD2 101.4 97.4 REMARK 620 4 QHO B 801 N05 122.6 80.1 135.6 REMARK 620 5 QHO B 801 O06 98.4 107.0 144.4 32.6 REMARK 620 6 QHO B 801 O07 166.8 88.7 84.5 51.2 70.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 804 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 623 O REMARK 620 2 ASP B 626 O 78.0 REMARK 620 3 VAL B 629 O 117.7 81.4 REMARK 620 4 TYR B 662 O 153.6 113.5 88.1 REMARK 620 5 HOH B 938 O 70.7 147.2 122.0 91.6 REMARK 620 6 HOH B 948 O 80.1 83.3 153.2 78.0 81.6 REMARK 620 N 1 2 3 4 5 DBREF 8D9A A 440 798 UNP A7YT55 A7YT55_DANRE 288 646 DBREF 8D9A B 440 798 UNP A7YT55 A7YT55_DANRE 288 646 SEQADV 8D9A SER A 435 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A ASN A 436 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A ALA A 437 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A GLY A 438 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A GLY A 439 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A SER B 435 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A ASN B 436 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A ALA B 437 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A GLY B 438 UNP A7YT55 EXPRESSION TAG SEQADV 8D9A GLY B 439 UNP A7YT55 EXPRESSION TAG SEQRES 1 A 364 SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU VAL SEQRES 2 A 364 TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP ASP SEQRES 3 A 364 SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG ILE SEQRES 4 A 364 PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG CYS SEQRES 5 A 364 HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU LEU SEQRES 6 A 364 ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE LYS SEQRES 7 A 364 SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG LEU SEQRES 8 A 364 GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SER SEQRES 9 A 364 TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE ASN SEQRES 10 A 364 SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN ALA SEQRES 11 A 364 VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU LYS SEQRES 12 A 364 ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA ALA SEQRES 13 A 364 LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SER SEQRES 14 A 364 LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY SEQRES 15 A 364 ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER VAL SEQRES 16 A 364 LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA PHE SEQRES 17 A 364 PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL GLY SEQRES 18 A 364 LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO TRP SEQRES 19 A 364 ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA ALA SEQRES 20 A 364 PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE ALA SEQRES 21 A 364 PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA ALA SEQRES 22 A 364 ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO GLU SEQRES 23 A 364 GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU ALA SEQRES 24 A 364 ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR ASN SEQRES 25 A 364 LEU THR SER ILE SER GLU SER MET SER MET CYS THR SER SEQRES 26 A 364 MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS LEU SEQRES 27 A 364 THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN ASN SEQRES 28 A 364 VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU ARG SEQRES 1 B 364 SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU VAL SEQRES 2 B 364 TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP ASP SEQRES 3 B 364 SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG ILE SEQRES 4 B 364 PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG CYS SEQRES 5 B 364 HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU LEU SEQRES 6 B 364 ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE LYS SEQRES 7 B 364 SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG LEU SEQRES 8 B 364 GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SER SEQRES 9 B 364 TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE ASN SEQRES 10 B 364 SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN ALA SEQRES 11 B 364 VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU LYS SEQRES 12 B 364 ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA ALA SEQRES 13 B 364 LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SER SEQRES 14 B 364 LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY SEQRES 15 B 364 ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER VAL SEQRES 16 B 364 LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA PHE SEQRES 17 B 364 PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL GLY SEQRES 18 B 364 LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO TRP SEQRES 19 B 364 ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA ALA SEQRES 20 B 364 PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE ALA SEQRES 21 B 364 PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA ALA SEQRES 22 B 364 ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO GLU SEQRES 23 B 364 GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU ALA SEQRES 24 B 364 ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR ASN SEQRES 25 B 364 LEU THR SER ILE SER GLU SER MET SER MET CYS THR SER SEQRES 26 B 364 MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS LEU SEQRES 27 B 364 THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN ASN SEQRES 28 B 364 VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU ARG HET QHO A 801 13 HET ZN A 802 1 HET K A 803 1 HET K A 804 1 HET QHO B 801 13 HET ZN B 802 1 HET K B 803 1 HET K B 804 1 HETNAM QHO 2,3,5-TRIFLUORO-N-HYDROXYBENZAMIDE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION FORMUL 3 QHO 2(C7 H4 F3 N O2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 K 4(K 1+) FORMUL 11 HOH *433(H2 O) HELIX 1 AA1 GLN A 450 HIS A 455 5 6 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 GLU A 528 1 11 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 ILE A 599 1 13 HELIX 10 AB1 GLY A 616 PHE A 623 1 8 HELIX 11 AB2 SER A 646 ASN A 650 5 5 HELIX 12 AB3 LEU A 656 ARG A 660 5 5 HELIX 13 AB4 GLY A 674 LEU A 685 1 12 HELIX 14 AB5 LEU A 685 ALA A 694 1 10 HELIX 15 AB6 THR A 718 MET A 730 1 13 HELIX 16 AB7 SER A 731 GLY A 735 5 5 HELIX 17 AB8 ASN A 746 LEU A 762 1 17 HELIX 18 AB9 LYS A 776 ALA A 791 1 16 HELIX 19 AC1 ASP B 449 HIS B 455 5 7 HELIX 20 AC2 PRO B 467 LEU B 480 1 14 HELIX 21 AC3 LEU B 482 CYS B 486 5 5 HELIX 22 AC4 THR B 495 ALA B 500 1 6 HELIX 23 AC5 SER B 504 SER B 514 1 11 HELIX 24 AC6 GLU B 515 MET B 517 5 3 HELIX 25 AC7 LYS B 518 GLU B 528 1 11 HELIX 26 AC8 GLU B 537 THR B 558 1 22 HELIX 27 AC9 ASN B 587 THR B 600 1 14 HELIX 28 AD1 GLY B 616 GLU B 624 1 9 HELIX 29 AD2 GLU B 638 ALA B 641 5 4 HELIX 30 AD3 SER B 646 ASN B 650 5 5 HELIX 31 AD4 LEU B 656 ARG B 660 5 5 HELIX 32 AD5 GLY B 674 LEU B 685 1 12 HELIX 33 AD6 LEU B 685 ALA B 694 1 10 HELIX 34 AD7 THR B 718 MET B 730 1 13 HELIX 35 AD8 SER B 731 GLY B 735 5 5 HELIX 36 AD9 ASN B 746 LEU B 762 1 17 HELIX 37 AE1 LYS B 776 ALA B 791 1 16 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 TYR A 448 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ILE A 567 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O LEU A 738 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O ILE A 632 N ASP A 610 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O ILE A 666 N SER A 633 SHEET 1 AA2 8 HIS B 487 ARG B 488 0 SHEET 2 AA2 8 THR B 444 VAL B 447 1 N THR B 444 O HIS B 487 SHEET 3 AA2 8 ASN B 563 ALA B 566 1 O ASN B 563 N GLY B 445 SHEET 4 AA2 8 VAL B 737 LEU B 741 1 O ILE B 739 N ALA B 566 SHEET 5 AA2 8 LEU B 697 ALA B 702 1 N VAL B 700 O LEU B 738 SHEET 6 AA2 8 VAL B 606 ASP B 610 1 N LEU B 607 O LEU B 699 SHEET 7 AA2 8 VAL B 629 ARG B 636 1 O ILE B 632 N ASP B 610 SHEET 8 AA2 8 ASN B 663 TRP B 668 1 O VAL B 664 N TYR B 631 LINK O ASP A 610 K K A 803 1555 1555 2.76 LINK OD1 ASP A 610 K K A 803 1555 1555 2.76 LINK OD1 ASP A 612 ZN ZN A 802 1555 1555 1.98 LINK O ASP A 612 K K A 803 1555 1555 2.62 LINK ND1 HIS A 614 ZN ZN A 802 1555 1555 2.12 LINK O HIS A 614 K K A 803 1555 1555 2.71 LINK O PHE A 623 K K A 804 1555 1555 2.62 LINK O ASP A 626 K K A 804 1555 1555 2.85 LINK O VAL A 629 K K A 804 1555 1555 2.69 LINK OG SER A 633 K K A 803 1555 1555 2.79 LINK O LEU A 634 K K A 803 1555 1555 2.66 LINK O TYR A 662 K K A 804 1555 1555 2.84 LINK OD2 ASP A 705 ZN ZN A 802 1555 1555 2.03 LINK N05 QHO A 801 ZN ZN A 802 1555 1555 2.63 LINK O06 QHO A 801 ZN ZN A 802 1555 1555 2.07 LINK O07 QHO A 801 ZN ZN A 802 1555 1555 2.62 LINK K K A 804 O HOH A 942 1555 1555 2.71 LINK K K A 804 O HOH A1008 1555 1555 3.06 LINK O ASP B 610 K K B 803 1555 1555 2.87 LINK OD1 ASP B 610 K K B 803 1555 1555 2.79 LINK OD1 ASP B 612 ZN ZN B 802 1555 1555 1.95 LINK O ASP B 612 K K B 803 1555 1555 2.62 LINK ND1 HIS B 614 ZN ZN B 802 1555 1555 2.14 LINK O HIS B 614 K K B 803 1555 1555 2.70 LINK O PHE B 623 K K B 804 1555 1555 2.67 LINK O ASP B 626 K K B 804 1555 1555 2.87 LINK O VAL B 629 K K B 804 1555 1555 2.72 LINK OG SER B 633 K K B 803 1555 1555 2.69 LINK O LEU B 634 K K B 803 1555 1555 2.64 LINK O TYR B 662 K K B 804 1555 1555 2.72 LINK OD2 ASP B 705 ZN ZN B 802 1555 1555 2.02 LINK N05 QHO B 801 ZN ZN B 802 1555 1555 2.61 LINK O06 QHO B 801 ZN ZN B 802 1555 1555 2.04 LINK O07 QHO B 801 ZN ZN B 802 1555 1555 2.56 LINK K K B 804 O HOH B 938 1555 1555 3.09 LINK K K B 804 O HOH B 948 1555 1555 2.69 CISPEP 1 ARG A 569 PRO A 570 0 -6.48 CISPEP 2 PHE A 643 PRO A 644 0 7.39 CISPEP 3 ARG B 569 PRO B 570 0 -6.22 CISPEP 4 PHE B 643 PRO B 644 0 5.81 CRYST1 75.035 92.044 96.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013327 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010395 0.00000