HEADER IMMUNE SYSTEM,ANTITOXIN/TOXIN 12-JUN-22 8D9Z TITLE CRYSTAL STRUCTURE OF COBRA ALPHA-NEUROTOXIN IN COMPLEX WITH CENTI-LNX- TITLE 2 D09 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTI-LNX-D09 FAB LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CENTI-LNX-D09 FAB HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LONG NEUROTOXIN 1; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: NEUROTOXIN ALPHA; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: NAJA NIVEA; SOURCE 13 ORGANISM_COMMON: CAPE COBRA; SOURCE 14 ORGANISM_TAXID: 8655; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIVENOM, 3-FINGER TOXIN, ALPHA-NEUROTOXIN, LONG NEUROTOXIN 1, KEYWDS 2 ANTIBODY, ANTITOXIN, IMMUNE SYSTEM, ANTITOXIN-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV,R.VERARDI,E.S.TULLY,J.GLANVILLE,P.D.KWONG REVDAT 3 30-OCT-24 8D9Z 1 REMARK REVDAT 2 04-SEP-24 8D9Z 1 TITLE COMPND SOURCE REMARK REVDAT 2 2 1 DBREF HELIX SHEET SSBOND REVDAT 2 3 1 ATOM REVDAT 1 14-JUN-23 8D9Z 0 JRNL AUTH J.GLANVILLE,J.ANDRADE,M.BELLIN,S.KIM,S.PLETNEV,D.TSAO, JRNL AUTH 2 R.VERARDI,R.BEDI,T.FRIEDE,E.TULLY,B.ZHANG,T.BYLUND,T.LIU, JRNL AUTH 3 P.D.KWONG JRNL TITL VENOM PROTECTION BY ANTIBODY FROM A SNAKEBITE HYPERIMMUNE JRNL TITL 2 SUBJECT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 52273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4088 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3700 ; 0.003 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5557 ; 1.665 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8590 ; 1.435 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 7.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;30.907 ;23.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 639 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4686 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 918 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2085 ; 2.364 ; 2.768 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2083 ; 2.365 ; 2.765 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2619 ; 3.383 ; 4.130 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2620 ; 3.382 ; 4.132 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2003 ; 3.921 ; 3.126 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2004 ; 3.920 ; 3.128 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2939 ; 5.580 ; 4.517 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4306 ; 7.080 ;33.004 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4236 ; 6.921 ;32.513 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8D9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 1.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: MODEL FOUND BY BALBES SOFTWARE USING INPUT REMARK 200 SEQUENCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM SULFATE, 100MM SODIUM REMARK 280 ACETATE PH 4.6, 19% PEG 4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 173.36400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.68200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.68200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 173.36400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 SER B 215 REMARK 465 CYS B 216 REMARK 465 ASP B 217 REMARK 465 LYS B 218 REMARK 465 THR B 219 REMARK 465 HIS B 220 REMARK 465 THR B 221 REMARK 465 GLY B 222 REMARK 465 LEU B 223 REMARK 465 GLU B 224 REMARK 465 LYS D 69 REMARK 465 ARG D 70 REMARK 465 SER D 71 REMARK 465 LEU D 72 REMARK 465 GLU D 73 REMARK 465 VAL D 74 REMARK 465 LEU D 75 REMARK 465 PHE D 76 REMARK 465 GLN D 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 451 O HOH A 560 2.04 REMARK 500 O HOH A 465 O HOH A 556 2.15 REMARK 500 O HOH A 564 O HOH B 476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 57 CA - CB - SG ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -120.39 45.67 REMARK 500 SER A 30 -123.34 52.57 REMARK 500 ALA A 51 -35.97 64.56 REMARK 500 SER A 77 81.35 -153.20 REMARK 500 ALA A 84 -178.32 -174.78 REMARK 500 ASP B 144 66.27 61.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8D9Y RELATED DB: PDB REMARK 900 RELATED ID: 8DA0 RELATED DB: PDB REMARK 900 RELATED ID: 8DA1 RELATED DB: PDB REMARK 900 RELATED ID: 8V13 RELATED DB: PDB DBREF 8D9Z A 1 214 PDB 8D9Z 8D9Z 1 214 DBREF 8D9Z B 1 224 PDB 8D9Z 8D9Z 1 224 DBREF 8D9Z D 1 71 UNP P01390 3L21_NAJNI 1 71 SEQADV 8D9Z LEU D 72 UNP P01390 EXPRESSION TAG SEQADV 8D9Z GLU D 73 UNP P01390 EXPRESSION TAG SEQADV 8D9Z VAL D 74 UNP P01390 EXPRESSION TAG SEQADV 8D9Z LEU D 75 UNP P01390 EXPRESSION TAG SEQADV 8D9Z PHE D 76 UNP P01390 EXPRESSION TAG SEQADV 8D9Z GLN D 77 UNP P01390 EXPRESSION TAG SEQRES 1 A 214 GLU ILE VAL LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 A 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 A 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 A 214 SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER GLN SEQRES 7 A 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN ALA SEQRES 8 A 214 ASN SER PHE PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 237 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY PHE VAL GLN SEQRES 2 B 237 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 237 PHE THR PHE SER ASN PHE ASP MET HIS TRP VAL ARG GLN SEQRES 4 B 237 SER PRO GLY LYS GLY LEU GLU TRP VAL SER GLY LEU ASP SEQRES 5 B 237 HIS SER GLY GLY ALA HIS TYR ALA GLY SER VAL LYS GLY SEQRES 6 B 237 ARG PHE THR ILE SER ARG GLU ASP ALA LYS ASN SER LEU SEQRES 7 B 237 ASP LEU GLN MET ASN ASN LEU ARG VAL ASP ASP THR ALA SEQRES 8 B 237 VAL TYR PHE CYS VAL ARG GLY THR LEU TYR HIS TYR THR SEQRES 9 B 237 SER GLY SER TYR TYR SER ASP ALA PHE ASP ILE TRP GLY SEQRES 10 B 237 GLN GLY THR LEU VAL THR VAL SER SER ALA SER VAL LYS SEQRES 11 B 237 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 B 237 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 B 237 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 B 237 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 B 237 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 B 237 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 B 237 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 B 237 LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 19 B 237 GLY LEU GLU SEQRES 1 D 77 ILE ARG CYS PHE ILE THR PRO ASP VAL THR SER GLN ALA SEQRES 2 D 77 CYS PRO ASP GLY HIS VAL CYS TYR THR LYS MET TRP CYS SEQRES 3 D 77 ASP ASN PHE CYS GLY MET ARG GLY LYS ARG VAL ASP LEU SEQRES 4 D 77 GLY CYS ALA ALA THR CYS PRO LYS VAL LYS PRO GLY VAL SEQRES 5 D 77 ASN ILE LYS CYS CYS SER ARG ASP ASN CYS ASN PRO PHE SEQRES 6 D 77 PRO THR ARG LYS ARG SER LEU GLU VAL LEU PHE GLN HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET ACT D 101 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 10(C3 H8 O3) FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 HOH *351(H2 O) HELIX 1 AA1 GLN A 79 PHE A 83 5 5 HELIX 2 AA2 SER A 121 SER A 127 1 7 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 THR B 28 PHE B 32 5 5 HELIX 5 AA5 GLY B 61 LYS B 64 5 4 HELIX 6 AA6 ASP B 73 LYS B 75 5 3 HELIX 7 AA7 ARG B 83 THR B 87 5 5 HELIX 8 AA8 SER B 156 ALA B 158 5 3 HELIX 9 AA9 SER B 187 GLN B 192 1 6 HELIX 10 AB1 LYS B 201 ASN B 204 5 4 HELIX 11 AB2 PHE D 29 GLY D 34 1 6 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 AA2 6 SER A 10 ALA A 13 0 SHEET 2 AA2 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA2 6 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA2 6 LEU A 33 GLN A 38 -1 N GLN A 38 O THR A 85 SHEET 5 AA2 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 AA2 6 SER A 53 LEU A 54 -1 O SER A 53 N TYR A 49 SHEET 1 AA3 4 SER A 10 ALA A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O ASN A 137 N SER A 114 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 181 N ALA A 130 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 GLN A 155 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N TRP A 148 O GLN A 155 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 SER B 7 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA6 4 SER B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA6 4 PHE B 67 GLU B 72 -1 N THR B 68 O GLN B 81 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 AA7 6 ALA B 88 TYR B 100 -1 N TYR B 90 O THR B 107 SHEET 4 AA7 6 MET B 34 SER B 40 -1 N VAL B 37 O PHE B 91 SHEET 5 AA7 6 GLY B 44 LEU B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 ALA B 57 TYR B 59 -1 O HIS B 58 N GLY B 50 SHEET 1 AA8 4 GLY B 10 VAL B 12 0 SHEET 2 AA8 4 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 AA8 4 ALA B 88 TYR B 100 -1 N TYR B 90 O THR B 107 SHEET 4 AA8 4 GLY B 100C TRP B 103 -1 O ILE B 102 N ARG B 94 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 THR B 135 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AA9 4 TYR B 176 PRO B 185 -1 O LEU B 178 N VAL B 142 SHEET 4 AA9 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AB1 4 SER B 120 LEU B 124 0 SHEET 2 AB1 4 THR B 135 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AB1 4 TYR B 176 PRO B 185 -1 O LEU B 178 N VAL B 142 SHEET 4 AB1 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AB2 3 THR B 151 TRP B 154 0 SHEET 2 AB2 3 ILE B 195 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AB2 3 THR B 205 LYS B 210 -1 O THR B 205 N HIS B 200 SHEET 1 AB3 2 ARG D 2 ILE D 5 0 SHEET 2 AB3 2 THR D 10 ALA D 13 -1 O GLN D 12 N CYS D 3 SHEET 1 AB4 3 ARG D 36 ALA D 42 0 SHEET 2 AB4 3 VAL D 19 TRP D 25 -1 N LYS D 23 O ASP D 38 SHEET 3 AB4 3 ASN D 53 CYS D 57 -1 O ASN D 53 N MET D 24 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.19 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.00 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.16 SSBOND 4 CYS B 140 CYS B 196 1555 1555 2.00 SSBOND 5 CYS D 3 CYS D 20 1555 1555 2.02 SSBOND 6 CYS D 14 CYS D 41 1555 1555 2.08 SSBOND 7 CYS D 26 CYS D 30 1555 1555 2.20 SSBOND 8 CYS D 45 CYS D 56 1555 1555 2.08 SSBOND 9 CYS D 57 CYS D 62 1555 1555 1.89 CISPEP 1 SER A 7 PRO A 8 0 -9.27 CISPEP 2 SER A 7 PRO A 8 0 -10.47 CISPEP 3 PHE A 94 PRO A 95 0 -10.05 CISPEP 4 TYR A 140 PRO A 141 0 3.17 CISPEP 5 PHE B 146 PRO B 147 0 -7.94 CISPEP 6 GLU B 148 PRO B 149 0 -2.52 CISPEP 7 THR D 6 PRO D 7 0 5.55 CRYST1 61.285 61.285 260.046 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016317 0.009421 0.000000 0.00000 SCALE2 0.000000 0.018841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003845 0.00000