HEADER PROTEIN BINDING 13-JUN-22 8DA5 TITLE COEVOLVED AFFIBODY-Z DOMAIN PAIR LL1.C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A,SPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A,SPA; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: AFFIBODY LL1.FIVM; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: AFFIBODY LL1.FIVM; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 9 ORGANISM_TAXID: 1280; SOURCE 10 GENE: SPA; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFIBODY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.M.JUDE,A.YANG,K.C.GARCIA REVDAT 3 22-NOV-23 8DA5 1 TITLE REVDAT 2 09-AUG-23 8DA5 1 JRNL REVDAT 1 26-JUL-23 8DA5 0 JRNL AUTH A.YANG,K.M.JUDE,B.LAI,M.MINOT,A.M.KOCYLA,C.R.GLASSMAN, JRNL AUTH 2 D.NISHIMIYA,Y.S.KIM,S.T.REDDY,A.A.KHAN,K.C.GARCIA JRNL TITL DEPLOYING SYNTHETIC COEVOLUTION AND MACHINE LEARNING TO JRNL TITL 2 ENGINEER PROTEIN-PROTEIN INTERACTIONS. JRNL REF SCIENCE V. 381 H1720 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 37499032 JRNL DOI 10.1126/SCIENCE.ADH1720 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 137572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 6854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0300 - 3.1100 1.00 4744 260 0.1699 0.1784 REMARK 3 2 3.1100 - 2.4700 1.00 4534 231 0.1576 0.1909 REMARK 3 3 2.4700 - 2.1500 1.00 4447 263 0.1372 0.1681 REMARK 3 4 2.1500 - 1.9600 1.00 4444 244 0.1419 0.1659 REMARK 3 5 1.9600 - 1.8200 1.00 4453 227 0.1443 0.1713 REMARK 3 6 1.8200 - 1.7100 1.00 4428 228 0.1462 0.1830 REMARK 3 7 1.7100 - 1.6200 0.99 4403 227 0.1326 0.1357 REMARK 3 8 1.6200 - 1.5500 0.99 4374 221 0.1273 0.1493 REMARK 3 9 1.5500 - 1.4900 1.00 4372 251 0.1228 0.1725 REMARK 3 10 1.4900 - 1.4400 1.00 4342 258 0.1320 0.1633 REMARK 3 11 1.4400 - 1.4000 1.00 4403 214 0.1522 0.1835 REMARK 3 12 1.4000 - 1.3600 1.00 4397 226 0.1673 0.2133 REMARK 3 13 1.3600 - 1.3200 1.00 4385 181 0.1706 0.2188 REMARK 3 14 1.3200 - 1.2900 0.99 4319 217 0.1645 0.1924 REMARK 3 15 1.2900 - 1.2600 0.99 4375 231 0.1710 0.1973 REMARK 3 16 1.2600 - 1.2300 0.99 4350 209 0.1770 0.1918 REMARK 3 17 1.2300 - 1.2100 0.99 4291 216 0.1918 0.2184 REMARK 3 18 1.2100 - 1.1900 0.97 4278 222 0.2120 0.2094 REMARK 3 19 1.1900 - 1.1600 0.98 4285 218 0.2166 0.2566 REMARK 3 20 1.1600 - 1.1400 0.99 4296 233 0.2222 0.2593 REMARK 3 21 1.1400 - 1.1300 0.99 4309 230 0.2383 0.2392 REMARK 3 22 1.1300 - 1.1100 0.99 4286 207 0.2608 0.2974 REMARK 3 23 1.1100 - 1.0900 0.99 4339 236 0.2766 0.3000 REMARK 3 24 1.0900 - 1.0800 0.99 4245 237 0.2937 0.3199 REMARK 3 25 1.0800 - 1.0600 0.98 4281 233 0.3092 0.3804 REMARK 3 26 1.0600 - 1.0500 0.98 4257 232 0.3374 0.3594 REMARK 3 27 1.0500 - 1.0400 0.98 4244 231 0.3466 0.3525 REMARK 3 28 1.0400 - 1.0200 0.98 4256 215 0.3510 0.3876 REMARK 3 29 1.0200 - 1.0100 1.00 4347 206 0.3856 0.3747 REMARK 3 30 1.0100 - 1.0000 0.98 4234 250 0.4319 0.4614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.066 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1995 REMARK 3 ANGLE : 1.419 2714 REMARK 3 CHIRALITY : 0.089 289 REMARK 3 PLANARITY : 0.010 365 REMARK 3 DIHEDRAL : 12.321 781 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.77487 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07674 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 2.94700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M AMMPO4, 100 MM TRIS PH 8.5 REMARK 280 CRYOPROTECTED WITH 30% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.30600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.05400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.57650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.05400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.30600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.57650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 59 REMARK 465 GLU A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 LEU C 59 REMARK 465 GLU C 60 REMARK 465 HIS C 61 REMARK 465 HIS C 62 REMARK 465 HIS C 63 REMARK 465 HIS C 64 REMARK 465 HIS C 65 REMARK 465 HIS C 66 REMARK 465 LEU B 59 REMARK 465 GLU B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 LEU D 59 REMARK 465 GLU D 60 REMARK 465 HIS D 61 REMARK 465 HIS D 62 REMARK 465 HIS D 63 REMARK 465 HIS D 64 REMARK 465 HIS D 65 REMARK 465 HIS D 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 LYS D 58 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 25 O HOH C 101 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 130 O HOH B 264 3655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 37 89.86 -154.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 196 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 303 DISTANCE = 6.74 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DA3 RELATED DB: PDB REMARK 900 RELATED ID: 8DA4 RELATED DB: PDB REMARK 900 RELATED ID: 8DA6 RELATED DB: PDB REMARK 900 RELATED ID: 8DA7 RELATED DB: PDB REMARK 900 RELATED ID: 8DA8 RELATED DB: PDB REMARK 900 RELATED ID: 8DA9 RELATED DB: PDB REMARK 900 RELATED ID: 8DAA RELATED DB: PDB REMARK 900 RELATED ID: 8DAB RELATED DB: PDB REMARK 900 RELATED ID: 8DAC RELATED DB: PDB DBREF 8DA5 A 1 58 UNP P38507 SPA_STAAU 212 269 DBREF 8DA5 C 1 58 UNP P38507 SPA_STAAU 212 269 DBREF 8DA5 B 0 66 PDB 8DA5 8DA5 0 66 DBREF 8DA5 D 0 66 PDB 8DA5 8DA5 0 66 SEQADV 8DA5 LAL A 0 UNP P38507 EXPRESSION TAG SEQADV 8DA5 VAL A 1 UNP P38507 ALA 212 CONFLICT SEQADV 8DA5 PHE A 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DA5 ILE A 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DA5 ALA A 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DA5 PHE A 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DA5 LEU A 59 UNP P38507 EXPRESSION TAG SEQADV 8DA5 GLU A 60 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 61 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 62 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 63 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 64 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 65 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS A 66 UNP P38507 EXPRESSION TAG SEQADV 8DA5 LAL C 0 UNP P38507 EXPRESSION TAG SEQADV 8DA5 VAL C 1 UNP P38507 ALA 212 CONFLICT SEQADV 8DA5 PHE C 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DA5 ILE C 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DA5 ALA C 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DA5 PHE C 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DA5 LEU C 59 UNP P38507 EXPRESSION TAG SEQADV 8DA5 GLU C 60 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 61 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 62 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 63 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 64 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 65 UNP P38507 EXPRESSION TAG SEQADV 8DA5 HIS C 66 UNP P38507 EXPRESSION TAG SEQRES 1 A 67 LAL VAL ASP ASN LYS PHE ASN LYS GLU PHE GLN ASN ALA SEQRES 2 A 67 ILE TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 A 67 GLN ARG ASN ALA PHE PHE GLN SER LEU MLY ASP ASP PRO SEQRES 4 A 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 A 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 A 67 HIS HIS SEQRES 1 C 67 LAL VAL ASP ASN MLY PHE ASN LYS GLU PHE GLN ASN ALA SEQRES 2 C 67 ILE TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 C 67 GLN ARG ASN ALA PHE PHE GLN SER LEU MLY ASP ASP PRO SEQRES 4 C 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA MLY LYS LEU SEQRES 5 C 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 C 67 HIS HIS SEQRES 1 B 67 ALA VAL ASP ASN MLY PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 B 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 B 67 GLN MLY MLY ALA PHE VAL MET SER LEU TRP ASP ASP PRO SEQRES 4 B 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS MLY LEU SEQRES 5 B 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 B 67 HIS HIS SEQRES 1 D 67 LAL VAL ASP ASN LYS PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 D 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 D 67 GLN MLY MLY ALA PHE VAL MET SER LEU TRP ASP ASP PRO SEQRES 4 D 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA MLY MLY LEU SEQRES 5 D 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 D 67 HIS HIS MODRES 8DA5 MLY A 35 LYS MODIFIED RESIDUE MODRES 8DA5 MLY C 4 LYS MODIFIED RESIDUE MODRES 8DA5 MLY C 35 LYS MODIFIED RESIDUE MODRES 8DA5 MLY C 49 LYS MODIFIED RESIDUE HET LAL A 0 17 HET MLY A 35 27 HET LAL C 0 17 HET MLY C 4 27 HET MLY C 35 27 HET MLY C 49 27 HET MLY B 4 27 HET MLY B 27 27 HET MLY B 28 51 HET MLY B 50 27 HET LAL D 0 17 HET MLY D 27 27 HET MLY D 28 51 HET MLY D 49 39 HET MLY D 50 27 HET GOL B 101 14 HETNAM LAL N,N-DIMETHYL-L-ALANINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LAL 3(C5 H11 N O2) FORMUL 1 MLY 12(C8 H18 N2 O2) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *379(H2 O) HELIX 1 AA1 ASN A 3 LEU A 19 1 17 HELIX 2 AA2 ASN A 23 ASP A 37 1 15 HELIX 3 AA3 GLN A 40 GLN A 55 1 16 HELIX 4 AA4 ASN C 6 LEU C 19 1 14 HELIX 5 AA5 ASN C 23 ASP C 37 1 15 HELIX 6 AA6 GLN C 40 GLN C 55 1 16 HELIX 7 AA7 ASN B 3 THR B 18 1 16 HELIX 8 AA8 ASN B 23 ASP B 37 1 15 HELIX 9 AA9 GLN B 40 GLN B 55 1 16 HELIX 10 AB1 ASP D 2 THR D 18 1 17 HELIX 11 AB2 ASN D 23 ASP D 37 1 15 HELIX 12 AB3 GLN D 40 GLN D 55 1 16 LINK C LAL A 0 N VAL A 1 1555 1555 1.32 LINK C LEU A 34 N MLY A 35 1555 1555 1.33 LINK C MLY A 35 N ASP A 36 1555 1555 1.33 LINK C LAL C 0 N VAL C 1 1555 1555 1.34 LINK C ASN C 3 N MLY C 4 1555 1555 1.33 LINK C MLY C 4 N PHE C 5 1555 1555 1.33 LINK C LEU C 34 N MLY C 35 1555 1555 1.33 LINK C MLY C 35 N ASP C 36 1555 1555 1.32 LINK C ALA C 48 N MLY C 49 1555 1555 1.34 LINK C MLY C 49 N LYS C 50 1555 1555 1.34 LINK C ASN B 3 N MLY B 4 1555 1555 1.33 LINK C MLY B 4 N PHE B 5 1555 1555 1.32 LINK C GLN B 26 N MLY B 27 1555 1555 1.36 LINK C MLY B 27 N MLY B 28 1555 1555 1.31 LINK C MLY B 28 N ALA B 29 1555 1555 1.35 LINK C LYS B 49 N MLY B 50 1555 1555 1.34 LINK C MLY B 50 N LEU B 51 1555 1555 1.33 LINK C LAL D 0 N VAL D 1 1555 1555 1.34 LINK C GLN D 26 N MLY D 27 1555 1555 1.32 LINK C MLY D 27 N MLY D 28 1555 1555 1.32 LINK C MLY D 28 N ALA D 29 1555 1555 1.35 LINK C ALA D 48 N MLY D 49 1555 1555 1.34 LINK C MLY D 49 N MLY D 50 1555 1555 1.33 LINK C MLY D 50 N LEU D 51 1555 1555 1.35 CRYST1 38.612 41.153 160.108 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006246 0.00000 HETATM 1 CB LAL A 0 22.691 -5.474 59.765 1.00 39.92 C ANISOU 1 CB LAL A 0 4892 5199 5077 2770 797 453 C HETATM 2 C LAL A 0 23.689 -3.308 58.996 1.00 34.64 C ANISOU 2 C LAL A 0 3069 4912 5180 1550 1632 283 C HETATM 3 O LAL A 0 22.659 -2.631 58.883 1.00 37.31 O ANISOU 3 O LAL A 0 3375 5657 5145 2176 1135 415 O HETATM 4 N LAL A 0 24.188 -4.097 61.280 1.00 39.36 N ANISOU 4 N LAL A 0 4587 5156 5211 1632 96 -490 N HETATM 5 CA LAL A 0 23.884 -4.527 59.912 1.00 37.06 C ANISOU 5 CA LAL A 0 3786 5212 5082 2471 832 59 C HETATM 6 CH1 LAL A 0 23.047 -3.548 61.954 1.00 40.96 C ANISOU 6 CH1 LAL A 0 4814 5377 5373 1287 -97 -628 C HETATM 7 CH2 LAL A 0 25.374 -3.294 61.426 1.00 40.44 C ANISOU 7 CH2 LAL A 0 4636 5443 5289 2175 -169 -511 C HETATM 8 HB1 LAL A 0 21.750 -4.926 60.009 1.00 47.92 H HETATM 9 HB2 LAL A 0 22.812 -6.335 60.464 1.00 47.92 H HETATM 10 HB3 LAL A 0 22.642 -5.849 58.716 1.00 47.92 H HETATM 11 HA LAL A 0 24.796 -5.046 59.481 1.00 44.49 H HETATM 12 HH11 LAL A 0 23.396 -3.059 62.901 1.00 49.17 H HETATM 13 HH12 LAL A 0 22.334 -4.384 62.182 1.00 49.17 H HETATM 14 HH13 LAL A 0 22.565 -2.794 61.277 1.00 49.17 H HETATM 15 HH21 LAL A 0 25.106 -2.233 61.180 1.00 48.55 H HETATM 16 HH22 LAL A 0 26.149 -3.686 60.716 1.00 48.55 H HETATM 17 HH23 LAL A 0 25.724 -3.383 62.488 1.00 48.55 H