HEADER PROTEIN BINDING 13-JUN-22 8DA9 TITLE COEVOLVED AFFIBODY-Z DOMAIN PAIR LL2.C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A,SPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AFFIBODY LL2.FIIV; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: AFFIBODY LL2.FIIV; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFIBODY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.M.JUDE,A.YANG,K.C.GARCIA REVDAT 3 22-NOV-23 8DA9 1 TITLE REVDAT 2 09-AUG-23 8DA9 1 JRNL REVDAT 1 26-JUL-23 8DA9 0 JRNL AUTH A.YANG,K.M.JUDE,B.LAI,M.MINOT,A.M.KOCYLA,C.R.GLASSMAN, JRNL AUTH 2 D.NISHIMIYA,Y.S.KIM,S.T.REDDY,A.A.KHAN,K.C.GARCIA JRNL TITL DEPLOYING SYNTHETIC COEVOLUTION AND MACHINE LEARNING TO JRNL TITL 2 ENGINEER PROTEIN-PROTEIN INTERACTIONS. JRNL REF SCIENCE V. 381 H1720 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 37499032 JRNL DOI 10.1126/SCIENCE.ADH1720 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 41193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0000 - 3.0900 0.97 3396 141 0.1639 0.1771 REMARK 3 2 3.0900 - 2.4500 0.96 3345 130 0.1619 0.1888 REMARK 3 3 2.4500 - 2.1400 0.97 3348 147 0.1434 0.1760 REMARK 3 4 2.1400 - 1.9500 0.98 3360 148 0.1536 0.1738 REMARK 3 5 1.9500 - 1.8100 0.97 3330 135 0.1644 0.2049 REMARK 3 6 1.8100 - 1.7000 0.94 3252 137 0.1896 0.2291 REMARK 3 7 1.7000 - 1.6200 0.97 3334 129 0.1924 0.2266 REMARK 3 8 1.6200 - 1.5500 0.97 3305 146 0.2143 0.2255 REMARK 3 9 1.5500 - 1.4900 0.96 3287 128 0.2372 0.2500 REMARK 3 10 1.4900 - 1.4300 0.96 3293 136 0.2609 0.2792 REMARK 3 11 1.4300 - 1.3900 0.91 3101 124 0.3518 0.3656 REMARK 3 12 1.3900 - 1.3500 0.94 3202 139 0.3639 0.4091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.188 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1892 REMARK 3 ANGLE : 1.314 2572 REMARK 3 CHIRALITY : 0.076 281 REMARK 3 PLANARITY : 0.010 345 REMARK 3 DIHEDRAL : 13.262 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4074 55.1073 7.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.2414 REMARK 3 T33: 0.2792 T12: 0.0401 REMARK 3 T13: 0.0055 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.5981 L22: 3.0672 REMARK 3 L33: 0.1214 L12: -3.3587 REMARK 3 L13: 0.5716 L23: -0.5080 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0606 S13: 0.3975 REMARK 3 S21: -0.2399 S22: 0.0884 S23: 0.1150 REMARK 3 S31: -0.1763 S32: -0.0947 S33: -0.0272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8365 48.7853 3.8214 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1330 REMARK 3 T33: 0.1165 T12: 0.0052 REMARK 3 T13: 0.0072 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 7.7334 L22: 9.2449 REMARK 3 L33: 8.4573 L12: -4.1036 REMARK 3 L13: -4.6242 L23: 1.4382 REMARK 3 S TENSOR REMARK 3 S11: 0.3612 S12: 0.1339 S13: 0.1993 REMARK 3 S21: -0.3461 S22: -0.2379 S23: -0.3389 REMARK 3 S31: -0.3644 S32: 0.1150 S33: -0.1247 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5842 39.0483 3.6446 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1391 REMARK 3 T33: 0.0984 T12: -0.0121 REMARK 3 T13: 0.0040 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 9.4726 L22: 3.9359 REMARK 3 L33: 1.9046 L12: -0.1437 REMARK 3 L13: 1.2212 L23: -0.1528 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.1737 S13: -0.1684 REMARK 3 S21: -0.2757 S22: 0.0943 S23: -0.0148 REMARK 3 S31: 0.1124 S32: 0.0801 S33: -0.0291 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9791 41.5151 11.9957 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1475 REMARK 3 T33: 0.1265 T12: -0.0081 REMARK 3 T13: -0.0176 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.5356 L22: 8.7331 REMARK 3 L33: 3.0250 L12: -5.3942 REMARK 3 L13: -0.5344 L23: 0.3911 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.4673 S13: 0.0729 REMARK 3 S21: 0.0162 S22: 0.1497 S23: -0.3018 REMARK 3 S31: 0.0283 S32: 0.1440 S33: -0.1378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5255 37.9713 -8.2177 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.2520 REMARK 3 T33: 0.3770 T12: -0.0438 REMARK 3 T13: 0.0043 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.3269 L22: 5.7173 REMARK 3 L33: 3.4054 L12: 4.9736 REMARK 3 L13: -1.6543 L23: -1.3713 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: -0.2461 S13: -0.9044 REMARK 3 S21: -0.1672 S22: 0.2401 S23: -0.2092 REMARK 3 S31: -0.0470 S32: 0.0319 S33: -0.1833 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1468 50.4171 -4.8479 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1413 REMARK 3 T33: 0.1292 T12: -0.0015 REMARK 3 T13: -0.0119 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.3236 L22: 3.2967 REMARK 3 L33: 1.6679 L12: 2.6894 REMARK 3 L13: -1.3870 L23: -0.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0234 S13: -0.1774 REMARK 3 S21: 0.1696 S22: -0.0544 S23: -0.2639 REMARK 3 S31: 0.0166 S32: 0.0491 S33: 0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2095 51.9823 -13.4642 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.1349 REMARK 3 T33: 0.1519 T12: -0.0302 REMARK 3 T13: 0.0059 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.0351 L22: 6.1489 REMARK 3 L33: 3.4523 L12: 4.2900 REMARK 3 L13: -0.1771 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: 0.3540 S13: -0.1455 REMARK 3 S21: -0.2033 S22: 0.1412 S23: -0.3759 REMARK 3 S31: -0.1715 S32: 0.2772 S33: -0.0148 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3807 51.8222 26.6713 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.2177 REMARK 3 T33: 0.2302 T12: -0.0137 REMARK 3 T13: 0.0082 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.7724 L22: 2.9792 REMARK 3 L33: 0.9713 L12: 3.3657 REMARK 3 L13: -1.9008 L23: -1.7484 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.1517 S13: 0.5480 REMARK 3 S21: -0.0747 S22: 0.0710 S23: -0.0126 REMARK 3 S31: -0.0769 S32: 0.1545 S33: -0.1986 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9657 39.0636 30.5578 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1206 REMARK 3 T33: 0.0866 T12: -0.0039 REMARK 3 T13: 0.0128 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.9224 L22: 5.3250 REMARK 3 L33: 2.5746 L12: 0.5206 REMARK 3 L13: 0.6883 L23: 0.4248 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.0247 S13: -0.0224 REMARK 3 S21: 0.1494 S22: -0.0810 S23: 0.1517 REMARK 3 S31: -0.0072 S32: -0.1405 S33: 0.0346 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8203 39.1828 21.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1473 REMARK 3 T33: 0.1192 T12: 0.0044 REMARK 3 T13: -0.0131 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.0705 L22: 9.2450 REMARK 3 L33: 2.4775 L12: 6.0961 REMARK 3 L13: -0.1926 L23: -0.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.4003 S13: 0.1057 REMARK 3 S21: -0.2023 S22: 0.1499 S23: 0.2826 REMARK 3 S31: 0.0085 S32: -0.1504 S33: -0.0311 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 0 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0484 36.6057 41.2669 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2327 REMARK 3 T33: 0.3112 T12: 0.0620 REMARK 3 T13: -0.0510 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.0820 L22: 4.3512 REMARK 3 L33: 2.0858 L12: 0.8441 REMARK 3 L13: -1.1645 L23: 0.3395 REMARK 3 S TENSOR REMARK 3 S11: 0.3935 S12: -0.2257 S13: -0.7922 REMARK 3 S21: 0.0298 S22: 0.1498 S23: -0.1247 REMARK 3 S31: 0.3742 S32: 0.2925 S33: -0.3625 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3110 42.8333 38.8886 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1842 REMARK 3 T33: 0.2546 T12: -0.0137 REMARK 3 T13: -0.0263 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 6.6372 L22: 3.9694 REMARK 3 L33: 7.1074 L12: -5.0385 REMARK 3 L13: 2.9960 L23: -1.4358 REMARK 3 S TENSOR REMARK 3 S11: 0.3433 S12: -0.3774 S13: -0.4965 REMARK 3 S21: -0.1411 S22: -0.0274 S23: 0.5168 REMARK 3 S31: 0.3558 S32: -0.1143 S33: -0.2291 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 19 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5233 51.5180 38.3424 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.1182 REMARK 3 T33: 0.1096 T12: 0.0030 REMARK 3 T13: 0.0050 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.5240 L22: 2.3778 REMARK 3 L33: 2.4231 L12: -0.9016 REMARK 3 L13: -0.8097 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.0464 S13: 0.0046 REMARK 3 S21: 0.0102 S22: -0.0753 S23: 0.1142 REMARK 3 S31: -0.0819 S32: -0.0897 S33: -0.0231 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3180 50.0116 46.9682 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1491 REMARK 3 T33: 0.1053 T12: 0.0343 REMARK 3 T13: 0.0099 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 6.0790 L22: 5.4958 REMARK 3 L33: 2.2640 L12: -4.7398 REMARK 3 L13: 0.7528 L23: -0.8301 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: -0.5733 S13: 0.0353 REMARK 3 S21: 0.1002 S22: 0.1942 S23: -0.0905 REMARK 3 S31: 0.0170 S32: -0.0883 S33: -0.0784 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000266209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88557 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11290 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 93.56 REMARK 200 R MERGE FOR SHELL (I) : 3.67900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5DJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE 0.1M HEPES PH REMARK 280 7.0 CRYOPROTECTED WITH 30% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.70150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.12950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.70150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.12950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 58 REMARK 465 LEU A 59 REMARK 465 GLU A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 LYS B 58 REMARK 465 LEU B 59 REMARK 465 GLU B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 LYS C 58 REMARK 465 LEU C 59 REMARK 465 GLU C 60 REMARK 465 HIS C 61 REMARK 465 HIS C 62 REMARK 465 HIS C 63 REMARK 465 HIS C 64 REMARK 465 HIS C 65 REMARK 465 HIS C 66 REMARK 465 LYS D 58 REMARK 465 LEU D 59 REMARK 465 GLU D 60 REMARK 465 HIS D 61 REMARK 465 HIS D 62 REMARK 465 HIS D 63 REMARK 465 HIS D 64 REMARK 465 HIS D 65 REMARK 465 HIS D 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 LYS C 7 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 6 O HOH B 101 1.53 REMARK 500 OE1 GLU D 47 O HOH D 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 8 CG GLU C 8 CD 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 37 82.35 -152.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DA3 RELATED DB: PDB REMARK 900 RELATED ID: 8DA4 RELATED DB: PDB REMARK 900 RELATED ID: 8DA5 RELATED DB: PDB REMARK 900 RELATED ID: 8DA6 RELATED DB: PDB REMARK 900 RELATED ID: 8DA7 RELATED DB: PDB REMARK 900 RELATED ID: 8DA8 RELATED DB: PDB REMARK 900 RELATED ID: 8DAA RELATED DB: PDB REMARK 900 RELATED ID: 8DAB RELATED DB: PDB REMARK 900 RELATED ID: 8DAC RELATED DB: PDB DBREF 8DA9 A 2 58 UNP P38507 SPA_STAAU 213 269 DBREF 8DA9 B 0 66 PDB 8DA9 8DA9 0 66 DBREF 8DA9 C 2 58 UNP P38507 SPA_STAAU 213 269 DBREF 8DA9 D 0 66 PDB 8DA9 8DA9 0 66 SEQADV 8DA9 ALA A 0 UNP P38507 EXPRESSION TAG SEQADV 8DA9 VAL A 1 UNP P38507 EXPRESSION TAG SEQADV 8DA9 LEU A 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DA9 VAL A 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DA9 ALA A 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DA9 PHE A 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DA9 LEU A 59 UNP P38507 EXPRESSION TAG SEQADV 8DA9 GLU A 60 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 61 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 62 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 63 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 64 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 65 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS A 66 UNP P38507 EXPRESSION TAG SEQADV 8DA9 ALA C 0 UNP P38507 EXPRESSION TAG SEQADV 8DA9 VAL C 1 UNP P38507 EXPRESSION TAG SEQADV 8DA9 LEU C 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 8DA9 VAL C 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 8DA9 ALA C 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 8DA9 PHE C 31 UNP P38507 ILE 242 ENGINEERED MUTATION SEQADV 8DA9 LEU C 59 UNP P38507 EXPRESSION TAG SEQADV 8DA9 GLU C 60 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 61 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 62 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 63 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 64 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 65 UNP P38507 EXPRESSION TAG SEQADV 8DA9 HIS C 66 UNP P38507 EXPRESSION TAG SEQRES 1 A 67 ALA VAL ASP ASN MLY PHE ASN LYS GLU LEU GLN ASN ALA SEQRES 2 A 67 VAL TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 A 67 GLN ARG ASN ALA PHE PHE GLN SER LEU MLY ASP ASP PRO SEQRES 4 A 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 A 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 A 67 HIS HIS SEQRES 1 B 67 ALA VAL ASP ASN MLY PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 B 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 B 67 GLN MLY LYS ALA PHE ILE VAL SER LEU TRP ASP ASP PRO SEQRES 4 B 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 B 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 B 67 HIS HIS SEQRES 1 C 67 ALA VAL ASP ASN MLY PHE ASN LYS GLU LEU GLN ASN ALA SEQRES 2 C 67 VAL TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 3 C 67 GLN ARG ASN ALA PHE PHE GLN SER LEU MLY ASP ASP PRO SEQRES 4 C 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 C 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 C 67 HIS HIS SEQRES 1 D 67 ALA VAL ASP ASN MLY PHE ASN LYS GLU PHE SER VAL ALA SEQRES 2 D 67 GLY ARG GLU ILE ILE THR LEU PRO ASN LEU ASN ASP PRO SEQRES 3 D 67 GLN MLY MLY ALA PHE ILE VAL SER LEU TRP ASP ASP PRO SEQRES 4 D 67 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 5 D 67 ASN ASP ALA GLN ALA PRO LYS LEU GLU HIS HIS HIS HIS SEQRES 6 D 67 HIS HIS MODRES 8DA9 MLY A 4 LYS MODIFIED RESIDUE MODRES 8DA9 MLY A 35 LYS MODIFIED RESIDUE MODRES 8DA9 MLY C 4 LYS MODIFIED RESIDUE MODRES 8DA9 MLY C 35 LYS MODIFIED RESIDUE HET MLY A 4 26 HET MLY A 35 27 HET MLY B 4 26 HET MLY B 27 27 HET MLY C 4 26 HET MLY C 35 27 HET MLY D 4 26 HET MLY D 27 27 HET MLY D 28 27 HET GOL A 101 13 HET SO4 A 102 5 HET GOL C 101 13 HET SO4 C 102 5 HET SO4 D 101 5 HETNAM MLY N-DIMETHYL-LYSINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLY 9(C8 H18 N2 O2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 SO4 3(O4 S 2-) FORMUL 10 HOH *134(H2 O) HELIX 1 AA1 PHE A 5 LEU A 19 1 15 HELIX 2 AA2 ASN A 23 ASP A 37 1 15 HELIX 3 AA3 GLN A 40 GLN A 55 1 16 HELIX 4 AA4 PHE B 5 THR B 18 1 14 HELIX 5 AA5 ASN B 23 ASP B 37 1 15 HELIX 6 AA6 GLN B 40 GLN B 55 1 16 HELIX 7 AA7 PHE C 5 LEU C 19 1 15 HELIX 8 AA8 ASN C 23 ASP C 37 1 15 HELIX 9 AA9 GLN C 40 GLN C 55 1 16 HELIX 10 AB1 PHE D 5 THR D 18 1 14 HELIX 11 AB2 ASN D 23 ASP D 37 1 15 HELIX 12 AB3 GLN D 40 GLN D 55 1 16 LINK C ASN A 3 N MLY A 4 1555 1555 1.32 LINK C MLY A 4 N PHE A 5 1555 1555 1.33 LINK C LEU A 34 N MLY A 35 1555 1555 1.32 LINK C MLY A 35 N ASP A 36 1555 1555 1.33 LINK C ASN B 3 N MLY B 4 1555 1555 1.32 LINK C MLY B 4 N PHE B 5 1555 1555 1.32 LINK C GLN B 26 N MLY B 27 1555 1555 1.33 LINK C MLY B 27 N LYS B 28 1555 1555 1.33 LINK C ASN C 3 N MLY C 4 1555 1555 1.33 LINK C MLY C 4 N PHE C 5 1555 1555 1.32 LINK C LEU C 34 N MLY C 35 1555 1555 1.33 LINK C MLY C 35 N ASP C 36 1555 1555 1.33 LINK C ASN D 3 N MLY D 4 1555 1555 1.32 LINK C MLY D 4 N PHE D 5 1555 1555 1.32 LINK C GLN D 26 N MLY D 27 1555 1555 1.34 LINK C MLY D 27 N MLY D 28 1555 1555 1.33 LINK C MLY D 28 N ALA D 29 1555 1555 1.32 CRYST1 53.403 54.259 68.601 90.00 94.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018726 0.000000 0.001444 0.00000 SCALE2 0.000000 0.018430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014620 0.00000