data_8DAP # _entry.id 8DAP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DAP pdb_00008dap 10.2210/pdb8dap/pdb WWPDB D_1000266330 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Has AG/TC sticky ends and forms a cubic arrangement' _pdbx_database_related.db_id 8D31 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DAP _pdbx_database_status.recvd_initial_deposition_date 2022-06-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lu, B.' 1 0000-0001-6424-2197 'Vecchioni, S.' 2 0000-0001-8243-650X 'Ohayon, Y.P.' 3 0000-0001-7500-4282 'Seeman, N.C.' 4 0000-0002-9680-4649 'Mao, C.' 5 0000-0001-7516-8666 'Sha, R.' 6 0000-0002-0807-734X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Small _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1613-6829 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first e2205830 _citation.page_last e2205830 _citation.title 'Highly Symmetric, Self-Assembling 3D DNA Crystals with Cubic and Trigonal Lattices.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/smll.202205830 _citation.pdbx_database_id_PubMed 36408817 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, B.' 1 ? primary 'Vecchioni, S.' 2 ? primary 'Ohayon, Y.P.' 3 ? primary 'Woloszyn, K.' 4 ? primary 'Markus, T.' 5 ? primary 'Mao, C.' 6 ? primary 'Seeman, N.C.' 7 ? primary 'Canary, J.W.' 8 ? primary 'Sha, R.' 9 0000-0002-0807-734X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8DAP _cell.details ? _cell.formula_units_Z ? _cell.length_a 166.609 _cell.length_a_esd ? _cell.length_b 166.609 _cell.length_b_esd ? _cell.length_c 119.318 _cell.length_c_esd ? _cell.volume 2868359.041 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ;P 32 2" ; _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3') ; 7339.744 3 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*AP*GP*GP*C)-3') ; 5234.382 3 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*G)-3') ; 6337.115 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DG)(DA)(DG)(DC)(DC)(DT)(DA)(DC)(DC)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DA)(DC)(DA) (DT)(DC)(DA)(DG) ; GAGCCTACCCTGTACGGACATCAG E,A,I ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DG)(DA)(DT)(DG)(DT)(DG)(DG)(DC)(DT)(DA)(DG)(DG)(DC)' TCCTGATGTGGCTAGGC H,C,D ? 3 polydeoxyribonucleotide no no ;(DT)(DA)(DC)(DA)(DC)(DC)(DG)(DT)(DA)(DC)(DA)(DC)(DC)(DG)(DT)(DA)(DC)(DA)(DC)(DC) (DG) ; TACACCGTACACCGTACACCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DG n 1 13 DT n 1 14 DA n 1 15 DC n 1 16 DG n 1 17 DG n 1 18 DA n 1 19 DC n 1 20 DA n 1 21 DT n 1 22 DC n 1 23 DA n 1 24 DG n 2 1 DT n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DC n 2 13 DT n 2 14 DA n 2 15 DG n 2 16 DG n 2 17 DC n 3 1 DT n 3 2 DA n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DC n 3 7 DG n 3 8 DT n 3 9 DA n 3 10 DC n 3 11 DA n 3 12 DC n 3 13 DC n 3 14 DG n 3 15 DT n 3 16 DA n 3 17 DC n 3 18 DA n 3 19 DC n 3 20 DC n 3 21 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 24 'synthetic construct' ? 32630 ? 2 1 sample 1 17 'synthetic construct' ? 32630 ? 3 1 sample 1 21 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8DAP 8DAP ? 1 ? 1 2 PDB 8DAP 8DAP ? 2 ? 1 3 PDB 8DAP 8DAP ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DAP E 1 ? 24 ? 8DAP 101 ? 124 ? 101 124 2 2 8DAP H 1 ? 17 ? 8DAP 200 ? 216 ? 200 216 3 1 8DAP A 1 ? 24 ? 8DAP 101 ? 124 ? 101 124 4 3 8DAP B 1 ? 21 ? 8DAP 101 ? 121 ? 101 121 5 2 8DAP C 1 ? 17 ? 8DAP 200 ? 216 ? 200 216 6 2 8DAP D 1 ? 17 ? 8DAP 200 ? 216 ? 200 216 7 1 8DAP I 1 ? 24 ? 8DAP 101 ? 124 ? 101 124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DAP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 10.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 88.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details '338-293 at 0.4/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.75 M ammonium sulfate, 120 mM Tris, 120 mM Acetic Acid, 6 mM EDTA' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 546.35 _reflns.entry_id 8DAP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 6.47 _reflns.d_resolution_low 72.14 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3631 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 6.47 _reflns_shell.d_res_low 6.82 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 203 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.283 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 600.89 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DAP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 6.47 _refine.ls_d_res_low 55.13 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3619 _refine.ls_number_reflns_R_free 200 _refine.ls_number_reflns_R_work 3419 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.14 _refine.ls_percent_reflns_R_free 5.53 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1420 _refine.ls_R_factor_R_free 0.1734 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1403 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3GBI _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.2141 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 6.47 _refine_hist.d_res_low 55.13 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2925 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2925 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0080 ? 3271 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1113 ? 5023 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0732 ? 570 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0051 ? 144 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 41.7961 ? 1401 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 6.47 _refine_ls_shell.d_res_low 55.13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 200 _refine_ls_shell.number_reflns_R_work 3419 _refine_ls_shell.percent_reflns_obs 90.14 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1734 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1403 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 8DAP _struct.title '[GA/TC] Self-Assembled 3D DNA Tensegrity Triangle with 24 bp Arm Length forming a Trigonal Hexagon' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DAP _struct_keywords.text 'tensegrity triangle, synthetic construct, self-assembly, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DG 3 N1 ? ? ? 1_555 E DC 17 O2 ? ? A DG 103 C DC 216 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? C DG 3 N2 ? ? ? 1_555 E DC 17 N3 ? ? A DG 103 C DC 216 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? C DC 4 N4 ? ? ? 1_555 E DC 17 O2 ? ? A DC 104 C DC 216 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog4 hydrog ? ? C DC 5 N3 ? ? ? 1_555 E DG 15 N1 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 5 N4 ? ? ? 1_555 E DG 15 O6 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 5 O2 ? ? ? 1_555 E DG 15 N2 ? ? A DC 105 C DG 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DA 7 N1 ? ? ? 1_555 E DT 13 N3 ? ? A DA 107 C DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DA 7 N6 ? ? ? 1_555 E DT 13 O4 ? ? A DA 107 C DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 9 N3 ? ? ? 1_555 E DG 11 N1 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 9 N4 ? ? ? 1_555 E DG 11 O6 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 9 O2 ? ? ? 1_555 E DG 11 N2 ? ? A DC 109 C DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 10 N3 ? ? ? 1_555 E DG 10 N1 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 10 N4 ? ? ? 1_555 E DG 10 O6 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 10 O2 ? ? ? 1_555 E DG 10 N2 ? ? A DC 110 C DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 4 N1 ? ? A DT 111 B DA 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 4 N6 ? ? A DT 111 B DA 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 3 N3 ? ? A DG 112 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 3 O2 ? ? A DG 112 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 3 N4 ? ? A DG 112 B DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 2 N1 ? ? A DT 113 B DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 2 N6 ? ? A DT 113 B DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 1 N3 ? ? A DA 114 B DT 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 1 O4 ? ? A DA 114 B DT 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DG 21 N1 ? ? A DA 114 B DG 121 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog25 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DG 21 O6 ? ? A DA 114 B DG 121 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog26 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 21 N1 ? ? A DC 115 B DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 21 O6 ? ? A DC 115 B DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 21 N2 ? ? A DC 115 B DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 16 N1 ? ? ? 1_555 D DC 20 N3 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 16 N2 ? ? ? 1_555 D DC 20 O2 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 16 O6 ? ? ? 1_555 D DC 20 N4 ? ? A DG 116 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 17 N1 ? ? ? 1_555 D DC 19 N3 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 17 N2 ? ? ? 1_555 D DC 19 O2 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 17 O6 ? ? ? 1_555 D DC 19 N4 ? ? A DG 117 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 18 N1 ? ? ? 1_555 F DT 9 N3 ? ? A DA 118 D DT 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 18 N6 ? ? ? 1_555 F DT 9 O4 ? ? A DA 118 D DT 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 19 N3 ? ? ? 1_555 F DG 8 N1 ? ? A DC 119 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 19 N4 ? ? ? 1_555 F DG 8 O6 ? ? A DC 119 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 19 O2 ? ? ? 1_555 F DG 8 N2 ? ? A DC 119 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 20 N1 ? ? ? 1_555 F DT 7 N3 ? ? A DA 120 D DT 206 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog41 hydrog ? ? C DT 21 N3 ? ? ? 1_555 F DA 6 N1 ? ? A DT 121 D DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 21 O4 ? ? ? 1_555 F DA 6 N6 ? ? A DT 121 D DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 22 N3 ? ? ? 1_555 F DG 5 N1 ? ? A DC 122 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 22 N4 ? ? ? 1_555 F DG 5 O6 ? ? A DC 122 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 22 O2 ? ? ? 1_555 F DG 5 N2 ? ? A DC 122 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 23 N1 ? ? ? 1_555 F DT 4 N3 ? ? A DA 123 D DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 23 N6 ? ? ? 1_555 F DT 4 O4 ? ? A DA 123 D DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 24 N1 ? ? ? 1_555 F DC 3 N3 ? ? A DG 124 D DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 24 N2 ? ? ? 1_555 F DC 3 O2 ? ? A DG 124 D DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 24 O6 ? ? ? 1_555 F DC 3 N4 ? ? A DG 124 D DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D DC 5 N3 ? ? ? 1_555 G DG 17 N1 ? ? B DC 105 I DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D DC 5 N4 ? ? ? 1_555 G DG 17 O6 ? ? B DC 105 I DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D DC 5 O2 ? ? ? 1_555 G DG 17 N2 ? ? B DC 105 I DG 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D DC 6 N3 ? ? ? 1_555 G DG 16 N1 ? ? B DC 106 I DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D DC 6 N4 ? ? ? 1_555 G DG 16 O6 ? ? B DC 106 I DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D DC 6 O2 ? ? ? 1_555 G DG 16 N2 ? ? B DC 106 I DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D DG 7 N1 ? ? ? 1_555 G DC 15 N3 ? ? B DG 107 I DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D DG 7 N2 ? ? ? 1_555 G DC 15 O2 ? ? B DG 107 I DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D DG 7 O6 ? ? ? 1_555 G DC 15 N4 ? ? B DG 107 I DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D DT 8 N3 ? ? ? 1_555 G DA 14 N1 ? ? B DT 108 I DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? D DT 8 O4 ? ? ? 1_555 G DA 14 N6 ? ? B DT 108 I DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? D DA 9 N1 ? ? ? 1_555 G DT 13 N3 ? ? B DA 109 I DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? D DA 9 N6 ? ? ? 1_555 G DT 13 O4 ? ? B DA 109 I DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? D DC 10 N3 ? ? ? 1_555 G DG 12 N1 ? ? B DC 110 I DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? D DC 10 N4 ? ? ? 1_555 G DG 12 O6 ? ? B DC 110 I DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? D DC 10 O2 ? ? ? 1_555 G DG 12 N2 ? ? B DC 110 I DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? D DA 11 N1 ? ? ? 1_555 G DT 11 N3 ? ? B DA 111 I DT 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? D DA 11 N6 ? ? ? 1_555 G DT 11 O4 ? ? B DA 111 I DT 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DC 3 N3 ? ? ? 1_555 G DG 24 N1 ? ? C DC 202 I DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DC 3 N4 ? ? ? 1_555 G DG 24 O6 ? ? C DC 202 I DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DC 3 O2 ? ? ? 1_555 G DG 24 N2 ? ? C DC 202 I DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DT 4 N3 ? ? ? 1_555 G DA 23 N1 ? ? C DT 203 I DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DT 4 O4 ? ? ? 1_555 G DA 23 N6 ? ? C DT 203 I DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DG 5 N1 ? ? ? 1_555 G DC 22 N3 ? ? C DG 204 I DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E DG 5 N2 ? ? ? 1_555 G DC 22 O2 ? ? C DG 204 I DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DG 5 O6 ? ? ? 1_555 G DC 22 N4 ? ? C DG 204 I DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DA 6 N1 ? ? ? 1_555 G DT 21 N3 ? ? C DA 205 I DT 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DA 6 N6 ? ? ? 1_555 G DT 21 O4 ? ? C DA 205 I DT 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DT 7 N3 ? ? ? 1_555 G DA 20 N1 ? ? C DT 206 I DA 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DT 7 O4 ? ? ? 1_555 G DA 20 N6 ? ? C DT 206 I DA 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DG 8 N1 ? ? ? 1_555 G DC 19 N3 ? ? C DG 207 I DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DG 8 N2 ? ? ? 1_555 G DC 19 O2 ? ? C DG 207 I DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DG 8 O6 ? ? ? 1_555 G DC 19 N4 ? ? C DG 207 I DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DT 9 N3 ? ? ? 1_555 G DA 18 N1 ? ? C DT 208 I DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E DT 9 O4 ? ? ? 1_555 G DA 18 N6 ? ? C DT 208 I DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A DG 3 N7 ? ? ? 1_555 F DC 17 N4 ? ? E DG 103 D DC 216 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog87 hydrog ? ? A DC 5 N4 ? ? ? 1_555 F DG 15 O6 ? ? E DC 105 D DG 214 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog88 hydrog ? ? A DT 6 N3 ? ? ? 1_555 F DG 15 O6 ? ? E DT 106 D DG 214 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? A DT 6 O2 ? ? ? 1_555 F DG 15 N1 ? ? E DT 106 D DG 214 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? A DA 7 N1 ? ? ? 1_555 F DT 13 N3 ? ? E DA 107 D DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A DA 7 N6 ? ? ? 1_555 F DT 13 O4 ? ? E DA 107 D DT 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A DC 9 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 109 D DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A DC 9 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 109 D DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A DC 9 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 109 D DG 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A DC 10 N3 ? ? ? 1_555 F DG 10 N1 ? ? E DC 110 D DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A DC 10 N4 ? ? ? 1_555 F DG 10 O6 ? ? E DC 110 D DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A DC 10 O2 ? ? ? 1_555 F DG 10 N2 ? ? E DC 110 D DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A DC 10 N3 ? ? ? 1_555 F DG 11 N2 ? ? E DC 110 D DG 210 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog99 hydrog ? ? A DC 10 O2 ? ? ? 1_555 F DG 11 N1 ? ? E DC 110 D DG 210 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog100 hydrog ? ? A DT 11 N3 ? ? ? 1_555 D DA 18 N1 ? ? E DT 111 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A DT 11 O4 ? ? ? 1_555 D DA 18 N6 ? ? E DT 111 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A DG 12 N1 ? ? ? 1_555 D DC 17 N3 ? ? E DG 112 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A DG 12 N2 ? ? ? 1_555 D DC 17 O2 ? ? E DG 112 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A DG 12 O6 ? ? ? 1_555 D DC 17 N4 ? ? E DG 112 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A DT 13 N3 ? ? ? 1_555 D DA 16 N1 ? ? E DT 113 B DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A DT 13 O4 ? ? ? 1_555 D DA 16 N6 ? ? E DT 113 B DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A DA 14 N1 ? ? ? 1_555 D DT 15 N3 ? ? E DA 114 B DT 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A DA 14 N6 ? ? ? 1_555 D DT 15 O4 ? ? E DA 114 B DT 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A DC 15 N3 ? ? ? 1_555 D DG 14 N1 ? ? E DC 115 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A DC 15 N4 ? ? ? 1_555 D DG 14 O6 ? ? E DC 115 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A DC 15 O2 ? ? ? 1_555 D DG 14 N2 ? ? E DC 115 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A DG 16 N1 ? ? ? 1_555 D DC 13 N3 ? ? E DG 116 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A DG 16 N2 ? ? ? 1_555 D DC 13 O2 ? ? E DG 116 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A DG 16 O6 ? ? ? 1_555 D DC 13 N4 ? ? E DG 116 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A DG 17 N1 ? ? ? 1_555 D DC 12 N3 ? ? E DG 117 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A DG 17 N2 ? ? ? 1_555 D DC 12 O2 ? ? E DG 117 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A DG 17 O6 ? ? ? 1_555 D DC 12 N4 ? ? E DG 117 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DG 8 N1 ? ? E DA 118 H DG 207 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog119 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DG 8 O6 ? ? E DA 118 H DG 207 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog120 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 9 N3 ? ? E DA 118 H DT 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 9 O4 ? ? E DA 118 H DT 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A DC 19 N3 ? ? ? 1_555 B DG 8 N1 ? ? E DC 119 H DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A DC 19 N4 ? ? ? 1_555 B DG 8 O6 ? ? E DC 119 H DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A DC 19 O2 ? ? ? 1_555 B DG 8 N2 ? ? E DC 119 H DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 7 N3 ? ? E DA 120 H DT 206 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog126 hydrog ? ? A DT 21 N3 ? ? ? 1_555 B DA 6 N1 ? ? E DT 121 H DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A DT 21 O4 ? ? ? 1_555 B DA 6 N6 ? ? E DT 121 H DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A DC 22 N3 ? ? ? 1_555 B DG 5 N1 ? ? E DC 122 H DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A DC 22 N4 ? ? ? 1_555 B DG 5 O6 ? ? E DC 122 H DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A DC 22 O2 ? ? ? 1_555 B DG 5 N2 ? ? E DC 122 H DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A DA 23 N1 ? ? ? 1_555 B DT 4 N3 ? ? E DA 123 H DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A DA 23 N6 ? ? ? 1_555 B DT 4 O4 ? ? E DA 123 H DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A DG 24 N1 ? ? ? 1_555 B DC 3 N3 ? ? E DG 124 H DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A DG 24 N2 ? ? ? 1_555 B DC 3 O2 ? ? E DG 124 H DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A DG 24 O6 ? ? ? 1_555 B DC 3 N4 ? ? E DG 124 H DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B DG 10 N1 ? ? ? 1_555 G DC 10 N3 ? ? H DG 209 I DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B DG 10 N2 ? ? ? 1_555 G DC 10 O2 ? ? H DG 209 I DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B DG 10 O6 ? ? ? 1_555 G DC 10 N4 ? ? H DG 209 I DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B DG 11 N1 ? ? ? 1_555 G DC 9 N3 ? ? H DG 210 I DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B DG 11 N2 ? ? ? 1_555 G DC 9 O2 ? ? H DG 210 I DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B DG 11 O6 ? ? ? 1_555 G DC 9 N4 ? ? H DG 210 I DC 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B DT 13 N3 ? ? ? 1_555 G DA 7 N1 ? ? H DT 212 I DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B DT 13 O4 ? ? ? 1_555 G DA 7 N6 ? ? H DT 212 I DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B DG 16 N1 ? ? ? 1_555 G DC 5 N3 ? ? H DG 215 I DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B DG 16 N2 ? ? ? 1_555 G DC 5 O2 ? ? H DG 215 I DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B DG 16 O6 ? ? ? 1_555 G DC 5 N4 ? ? H DG 215 I DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8DAP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0.003465 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006931 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008381 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG DG E . n A 1 2 DA 2 102 102 DA DA E . n A 1 3 DG 3 103 103 DG DG E . n A 1 4 DC 4 104 104 DC DC E . n A 1 5 DC 5 105 105 DC DC E . n A 1 6 DT 6 106 106 DT DT E . n A 1 7 DA 7 107 107 DA DA E . n A 1 8 DC 8 108 108 DC DC E . n A 1 9 DC 9 109 109 DC DC E . n A 1 10 DC 10 110 110 DC DC E . n A 1 11 DT 11 111 111 DT DT E . n A 1 12 DG 12 112 112 DG DG E . n A 1 13 DT 13 113 113 DT DT E . n A 1 14 DA 14 114 114 DA DA E . n A 1 15 DC 15 115 115 DC DC E . n A 1 16 DG 16 116 116 DG DG E . n A 1 17 DG 17 117 117 DG DG E . n A 1 18 DA 18 118 118 DA DA E . n A 1 19 DC 19 119 119 DC DC E . n A 1 20 DA 20 120 120 DA DA E . n A 1 21 DT 21 121 121 DT DT E . n A 1 22 DC 22 122 122 DC DC E . n A 1 23 DA 23 123 123 DA DA E . n A 1 24 DG 24 124 124 DG DG E . n B 2 1 DT 1 200 200 DT DT H . n B 2 2 DC 2 201 201 DC DC H . n B 2 3 DC 3 202 202 DC DC H . n B 2 4 DT 4 203 203 DT DT H . n B 2 5 DG 5 204 204 DG DG H . n B 2 6 DA 6 205 205 DA DA H . n B 2 7 DT 7 206 206 DT DT H . n B 2 8 DG 8 207 207 DG DG H . n B 2 9 DT 9 208 208 DT DT H . n B 2 10 DG 10 209 209 DG DG H . n B 2 11 DG 11 210 210 DG DG H . n B 2 12 DC 12 211 211 DC DC H . n B 2 13 DT 13 212 212 DT DT H . n B 2 14 DA 14 213 213 DA DA H . n B 2 15 DG 15 214 214 DG DG H . n B 2 16 DG 16 215 215 DG DG H . n B 2 17 DC 17 216 216 DC DC H . n C 1 1 DG 1 101 101 DG DG A . n C 1 2 DA 2 102 102 DA DA A . n C 1 3 DG 3 103 103 DG DG A . n C 1 4 DC 4 104 104 DC DC A . n C 1 5 DC 5 105 105 DC DC A . n C 1 6 DT 6 106 106 DT DT A . n C 1 7 DA 7 107 107 DA DA A . n C 1 8 DC 8 108 108 DC DC A . n C 1 9 DC 9 109 109 DC DC A . n C 1 10 DC 10 110 110 DC DC A . n C 1 11 DT 11 111 111 DT DT A . n C 1 12 DG 12 112 112 DG DG A . n C 1 13 DT 13 113 113 DT DT A . n C 1 14 DA 14 114 114 DA DA A . n C 1 15 DC 15 115 115 DC DC A . n C 1 16 DG 16 116 116 DG DG A . n C 1 17 DG 17 117 117 DG DG A . n C 1 18 DA 18 118 118 DA DA A . n C 1 19 DC 19 119 119 DC DC A . n C 1 20 DA 20 120 120 DA DA A . n C 1 21 DT 21 121 121 DT DT A . n C 1 22 DC 22 122 122 DC DC A . n C 1 23 DA 23 123 123 DA DA A . n C 1 24 DG 24 124 124 DG DG A . n D 3 1 DT 1 101 101 DT DT B . n D 3 2 DA 2 102 102 DA DA B . n D 3 3 DC 3 103 103 DC DC B . n D 3 4 DA 4 104 104 DA DA B . n D 3 5 DC 5 105 105 DC DC B . n D 3 6 DC 6 106 106 DC DC B . n D 3 7 DG 7 107 107 DG DG B . n D 3 8 DT 8 108 108 DT DT B . n D 3 9 DA 9 109 109 DA DA B . n D 3 10 DC 10 110 110 DC DC B . n D 3 11 DA 11 111 111 DA DA B . n D 3 12 DC 12 112 112 DC DC B . n D 3 13 DC 13 113 113 DC DC B . n D 3 14 DG 14 114 114 DG DG B . n D 3 15 DT 15 115 115 DT DT B . n D 3 16 DA 16 116 116 DA DA B . n D 3 17 DC 17 117 117 DC DC B . n D 3 18 DA 18 118 118 DA DA B . n D 3 19 DC 19 119 119 DC DC B . n D 3 20 DC 20 120 120 DC DC B . n D 3 21 DG 21 121 121 DG DG B . n E 2 1 DT 1 200 200 DT DT C . n E 2 2 DC 2 201 201 DC DC C . n E 2 3 DC 3 202 202 DC DC C . n E 2 4 DT 4 203 203 DT DT C . n E 2 5 DG 5 204 204 DG DG C . n E 2 6 DA 6 205 205 DA DA C . n E 2 7 DT 7 206 206 DT DT C . n E 2 8 DG 8 207 207 DG DG C . n E 2 9 DT 9 208 208 DT DT C . n E 2 10 DG 10 209 209 DG DG C . n E 2 11 DG 11 210 210 DG DG C . n E 2 12 DC 12 211 211 DC DC C . n E 2 13 DT 13 212 212 DT DT C . n E 2 14 DA 14 213 213 DA DA C . n E 2 15 DG 15 214 214 DG DG C . n E 2 16 DG 16 215 215 DG DG C . n E 2 17 DC 17 216 216 DC DC C . n F 2 1 DT 1 200 200 DT DT D . n F 2 2 DC 2 201 201 DC DC D . n F 2 3 DC 3 202 202 DC DC D . n F 2 4 DT 4 203 203 DT DT D . n F 2 5 DG 5 204 204 DG DG D . n F 2 6 DA 6 205 205 DA DA D . n F 2 7 DT 7 206 206 DT DT D . n F 2 8 DG 8 207 207 DG DG D . n F 2 9 DT 9 208 208 DT DT D . n F 2 10 DG 10 209 209 DG DG D . n F 2 11 DG 11 210 210 DG DG D . n F 2 12 DC 12 211 211 DC DC D . n F 2 13 DT 13 212 212 DT DT D . n F 2 14 DA 14 213 213 DA DA D . n F 2 15 DG 15 214 214 DG DG D . n F 2 16 DG 16 215 215 DG DG D . n F 2 17 DC 17 216 216 DC DC D . n G 1 1 DG 1 101 101 DG DG I . n G 1 2 DA 2 102 102 DA DA I . n G 1 3 DG 3 103 103 DG DG I . n G 1 4 DC 4 104 104 DC DC I . n G 1 5 DC 5 105 105 DC DC I . n G 1 6 DT 6 106 106 DT DT I . n G 1 7 DA 7 107 107 DA DA I . n G 1 8 DC 8 108 108 DC DC I . n G 1 9 DC 9 109 109 DC DC I . n G 1 10 DC 10 110 110 DC DC I . n G 1 11 DT 11 111 111 DT DT I . n G 1 12 DG 12 112 112 DG DG I . n G 1 13 DT 13 113 113 DT DT I . n G 1 14 DA 14 114 114 DA DA I . n G 1 15 DC 15 115 115 DC DC I . n G 1 16 DG 16 116 116 DG DG I . n G 1 17 DG 17 117 117 DG DG I . n G 1 18 DA 18 118 118 DA DA I . n G 1 19 DC 19 119 119 DC DC I . n G 1 20 DA 20 120 120 DA DA I . n G 1 21 DT 21 121 121 DT DT I . n G 1 22 DC 22 122 122 DC DC I . n G 1 23 DA 23 123 123 DA DA I . n G 1 24 DG 24 124 124 DG DG I . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ruojie.sha@nyu.edu _pdbx_contact_author.name_first Ruojie _pdbx_contact_author.name_last Sha _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0807-734X # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8420 ? 1 MORE -10 ? 1 'SSA (A^2)' 24960 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-25 2 'Structure model' 1 1 2023-08-16 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' Other 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_initial_refinement_model # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.pdb_format_compatible' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 75.323 -19.726 7.656 6.09884563753 3.9870566464 5.79963982833 -0.744329503188 0.435439518449 -1.1377942386 9.29198581337 5.57601632283 5.63742809666 0.252183960581 -0.496268086989 2.87390229293 -3.56055146437 -1.65023865709 3.52355425543 -2.55767297426 0.84745724031 -7.60145665524 -3.41962618506 5.63806356354 -1.37494346485 'X-RAY DIFFRACTION' 2 ? refined 71.426 1.782 -11.957 5.50227060873 4.89705773269 7.17259159711 0.622128684278 0.207829560026 2.36429183538 0.515146873957 9.71567767244 3.18114686512 0.939921522591 -1.65978856769 10.3104420154 -2.87413691259 2.5477856939 -0.935927996208 11.2193474161 8.21592217436 4.88255611379 4.87784542725 2.03698622516 -6.47734154968 'X-RAY DIFFRACTION' 3 ? refined 96.856 5.941 -8.174 5.9413410138 9.15660446597 5.13002620036 -1.2486609721 2.17027423188 1.77971567232 5.16492213418 7.71726102389 5.24421136116 2.97180869248 -1.83864005641 -1.82561409658 -4.49722840243 6.74326224282 -0.170140447136 2.52513912146 -3.37821227435 5.53719965143 -4.11049925301 0.791770977653 10.4876189734 'X-RAY DIFFRACTION' 4 ? refined 89.873 -41.655 -9.790 6.13780306192 3.10080284083 3.20013925456 -0.59563705884 -0.0906575754353 0.0731095397976 1.63049288479 14.7108281603 9.07825032058 -5.12773773044 1.71352944446 -7.33979516188 0.329636394887 -0.396601105669 1.28358615083 -2.22032347293 -0.374358423148 -0.135966238842 -0.999363038104 1.266889901 1.07803456657 'X-RAY DIFFRACTION' 5 ? refined 88.514 -36.686 -13.143 5.63693674045 4.4141824161 3.75414600688 -0.188541803397 -0.0683567116629 -1.04522883061 2.14847965812 8.63707460007 2.12518022113 6.41549762158 9.91927822994 2.31631769191 2.91474207273 -1.56650526102 -2.86916599664 3.86417782567 -3.05192250002 -0.854935821359 4.16932365683 -4.28626462447 -0.151161888832 'X-RAY DIFFRACTION' 6 ? refined 84.021 -17.136 -7.922 6.84559947036 2.82220719425 4.99945478892 0.240715636059 2.26483912304 0.311232780244 6.90980399646 2.20527915051 -0.594669344564 -3.73860937526 -0.30362822572 -1.13915529516 0.165743497105 -0.939628449913 0.764923569871 0.848890828226 -2.21457117463 4.08527105896 2.82969113468 -2.27941006275 -0.825054651701 'X-RAY DIFFRACTION' 7 ? refined 81.585 -38.762 -1.669 6.82250517824 3.70173420949 4.8813587454 -0.410624251791 -1.24379756233 0.23499283151 1.9558137872 1.94838995103 2.04710072245 2.00857223692 1.2297568372 1.88988774226 10.2107137137 -7.307693043 -3.84201541413 -1.44169306525 -3.07268252972 0.281597044215 -0.0111264198049 0.585574003894 3.83577388544 'X-RAY DIFFRACTION' 8 ? refined 97.641 -39.594 -26.062 8.05824527929 5.15518552904 5.25128338405 2.58189882708 0.332872296874 -0.040040298799 4.83751661779 8.81185718957 3.29066061877 3.99121655436 -7.39076552199 -2.86373419626 2.79527501874 -1.92930658291 0.924448005005 0.179783838874 -7.18708901107 1.87667486639 -2.68967154329 4.27719756812 -1.50774300994 'X-RAY DIFFRACTION' 9 ? refined 63.005 -40.417 -0.901 5.22061089509 8.48698528058 5.74840393785 -0.702403444072 -1.24479657862 -1.25685494043 6.67218895504 5.5085330505 3.17741534424 -0.412867518324 7.69089970958 4.42612237817 -1.05483924459 -12.9018351035 6.12735713928 4.72048947546 -10.0907715478 -4.62146159723 1.2584165049 -3.80513210362 -5.71678586706 'X-RAY DIFFRACTION' 10 ? refined 75.817 -31.663 22.554 8.7262522529 7.38170570911 1.37857460521 -1.23772475775 2.18674078711 -1.73289664309 3.5477676342 3.45119127025 1.68136581329 4.04395101773 1.85961912504 3.51384659826 2.30576972806 7.8112022651 -3.82644749728 -0.114383982674 5.81875358113 6.29586645081 -1.49290703525 -3.61363849206 -0.178719776755 'X-RAY DIFFRACTION' 11 ? refined 93.427 -11.142 -17.181 7.24738550274 5.58759725254 4.64541515748 0.0220118018503 0.837456859051 1.54104376518 13.3838719944 1.01904913142 -2.31222794138 -2.9923619076 -10.3886802277 2.67995827466 -0.861604442489 3.6138801376 -4.08824057085 0.256978064297 0.650036281935 8.49539777894 -2.34036698404 -6.33107490174 4.89734560313 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 E 101 E 124 '( CHAIN E AND RESID 101:124 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 H 200 H 208 '( CHAIN H AND RESID 200:208 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 H 209 H 216 '( CHAIN H AND RESID 209:216 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 101 A 124 '( CHAIN A AND RESID 101:124 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 101 B 104 '( CHAIN B AND RESID 101:104 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 105 B 118 '( CHAIN B AND RESID 105:118 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 119 B 121 '( CHAIN B AND RESID 119:121 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 C 200 C 216 '( CHAIN C AND RESID 200:216 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 D 200 D 208 '( CHAIN D AND RESID 200:208 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 D 209 D 216 '( CHAIN D AND RESID 209:216 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 I 101 I 124 '( CHAIN I AND RESID 101:124 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O5'" _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 200 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 216 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_654 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" E DG 101 ? ? "C3'" E DG 101 ? ? "C2'" E DG 101 ? ? 97.50 102.20 -4.70 0.70 N 2 1 "C1'" E DA 102 ? ? "O4'" E DA 102 ? ? "C4'" E DA 102 ? ? 102.75 110.10 -7.35 1.00 N 3 1 "O4'" E DA 102 ? ? "C1'" E DA 102 ? ? N9 E DA 102 ? ? 113.67 108.30 5.37 0.30 N 4 1 "O4'" E DC 104 ? ? "C1'" E DC 104 ? ? N1 E DC 104 ? ? 111.32 108.30 3.02 0.30 N 5 1 "O4'" H DC 202 ? ? "C1'" H DC 202 ? ? N1 H DC 202 ? ? 112.46 108.30 4.16 0.30 N 6 1 "O4'" H DT 206 ? ? "C1'" H DT 206 ? ? N1 H DT 206 ? ? 110.15 108.30 1.85 0.30 N 7 1 "O3'" H DT 208 ? ? P H DG 209 ? ? "O5'" H DG 209 ? ? 45.86 104.00 -58.14 1.90 Y 8 1 "O3'" H DT 208 ? ? P H DG 209 ? ? OP2 H DG 209 ? ? 129.92 110.50 19.42 1.10 Y 9 1 "O4'" H DG 215 ? ? "C1'" H DG 215 ? ? N9 H DG 215 ? ? 110.50 108.30 2.20 0.30 N 10 1 "O4'" A DC 104 ? ? "C1'" A DC 104 ? ? N1 A DC 104 ? ? 111.66 108.30 3.36 0.30 N 11 1 "O4'" A DC 109 ? ? "C1'" A DC 109 ? ? N1 A DC 109 ? ? 110.50 108.30 2.20 0.30 N 12 1 "O4'" B DC 103 ? ? "C1'" B DC 103 ? ? N1 B DC 103 ? ? 110.17 108.30 1.87 0.30 N 13 1 "C3'" B DA 104 ? ? "O3'" B DA 104 ? ? P B DC 105 ? ? 143.83 119.70 24.13 1.20 Y 14 1 "O3'" B DA 104 ? ? P B DC 105 ? ? "O5'" B DC 105 ? ? 63.48 104.00 -40.52 1.90 Y 15 1 "O3'" B DA 104 ? ? P B DC 105 ? ? OP2 B DC 105 ? ? 121.40 110.50 10.90 1.10 Y 16 1 "O4'" B DA 109 ? ? "C1'" B DA 109 ? ? N9 B DA 109 ? ? 110.21 108.30 1.91 0.30 N 17 1 "O3'" B DA 118 ? ? P B DC 119 ? ? "O5'" B DC 119 ? ? 134.82 104.00 30.82 1.90 Y 18 1 "O3'" B DA 118 ? ? P B DC 119 ? ? OP1 B DC 119 ? ? 79.67 105.20 -25.53 2.20 Y 19 1 "C1'" C DT 200 ? ? "O4'" C DT 200 ? ? "C4'" C DT 200 ? ? 101.21 110.10 -8.89 1.00 N 20 1 "C3'" C DT 200 ? ? "C2'" C DT 200 ? ? "C1'" C DT 200 ? ? 91.15 102.40 -11.25 0.80 N 21 1 N1 C DT 200 ? ? "C1'" C DT 200 ? ? "C2'" C DT 200 ? ? 124.43 114.30 10.13 1.40 N 22 1 "O4'" C DT 200 ? ? "C1'" C DT 200 ? ? N1 C DT 200 ? ? 118.47 108.30 10.17 0.30 N 23 1 "O5'" C DC 202 ? ? P C DC 202 ? ? OP2 C DC 202 ? ? 98.66 105.70 -7.04 0.90 N 24 1 "O4'" C DC 202 ? ? "C1'" C DC 202 ? ? N1 C DC 202 ? ? 110.83 108.30 2.53 0.30 N 25 1 "C3'" C DG 204 ? ? "C2'" C DG 204 ? ? "C1'" C DG 204 ? ? 97.52 102.40 -4.88 0.80 N 26 1 "O4'" C DG 204 ? ? "C1'" C DG 204 ? ? N9 C DG 204 ? ? 111.16 108.30 2.86 0.30 N 27 1 "O4'" C DT 206 ? ? "C1'" C DT 206 ? ? N1 C DT 206 ? ? 110.21 108.30 1.91 0.30 N 28 1 "O5'" D DC 201 ? ? P D DC 201 ? ? OP2 D DC 201 ? ? 88.81 105.70 -16.89 0.90 N 29 1 "C3'" D DT 208 ? ? "O3'" D DT 208 ? ? P D DG 209 ? ? 158.03 119.70 38.33 1.20 Y 30 1 "O3'" D DT 208 ? ? P D DG 209 ? ? "O5'" D DG 209 ? ? 117.49 104.00 13.49 1.90 Y 31 1 "O3'" D DT 208 ? ? P D DG 209 ? ? OP2 D DG 209 ? ? 118.20 110.50 7.70 1.10 Y 32 1 "O3'" D DT 208 ? ? P D DG 209 ? ? OP1 D DG 209 ? ? 81.35 105.20 -23.85 2.20 Y 33 1 "O4'" D DC 211 ? ? "C1'" D DC 211 ? ? N1 D DC 211 ? ? 110.72 108.30 2.42 0.30 N 34 1 "C1'" I DG 101 ? ? "O4'" I DG 101 ? ? "C4'" I DG 101 ? ? 103.87 110.10 -6.23 1.00 N 35 1 "C3'" I DG 101 ? ? "C2'" I DG 101 ? ? "C1'" I DG 101 ? ? 97.49 102.40 -4.91 0.80 N 36 1 "O4'" I DG 101 ? ? "C1'" I DG 101 ? ? N9 I DG 101 ? ? 115.81 108.30 7.51 0.30 N 37 1 "O4'" I DC 104 ? ? "C1'" I DC 104 ? ? N1 I DC 104 ? ? 113.02 108.30 4.72 0.30 N 38 1 "O4'" I DC 119 ? ? "C1'" I DC 119 ? ? N1 I DC 119 ? ? 110.22 108.30 1.92 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8DAP 'double helix' 8DAP 'a-form double helix' 8DAP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 F DC 17 1_555 -1.790 -1.197 1.426 -24.639 -14.619 -81.559 1 E_DG103:DC216_D E 103 ? D 216 ? ? 4 1 A DC 5 1_555 F DG 15 1_555 1.121 0.548 -0.464 17.921 -19.588 -56.788 2 E_DC105:DG214_D E 105 ? D 214 ? ? ? 1 A DA 7 1_555 F DT 13 1_555 0.174 -0.110 -0.952 -7.419 -10.441 -6.356 3 E_DA107:DT212_D E 107 ? D 212 ? 20 1 1 A DC 9 1_555 F DG 11 1_555 0.156 -0.331 -0.991 -2.890 3.007 -2.991 4 E_DC109:DG210_D E 109 ? D 210 ? 19 1 1 A DC 10 1_555 F DG 10 1_555 0.152 -0.215 -0.750 1.570 4.531 -4.117 5 E_DC110:DG209_D E 110 ? D 209 ? 19 1 1 A DT 11 1_555 D DA 18 1_555 -0.142 -0.253 -0.728 -7.712 8.572 -0.913 6 E_DT111:DA118_B E 111 ? B 118 ? 20 1 1 A DG 12 1_555 D DC 17 1_555 -0.223 -0.221 0.597 4.474 7.500 3.828 7 E_DG112:DC117_B E 112 ? B 117 ? 19 1 1 A DT 13 1_555 D DA 16 1_555 -0.110 -0.262 0.969 3.936 0.640 -2.498 8 E_DT113:DA116_B E 113 ? B 116 ? 20 1 1 A DA 14 1_555 D DT 15 1_555 0.112 -0.158 0.732 2.856 -2.480 -7.019 9 E_DA114:DT115_B E 114 ? B 115 ? 20 1 1 A DC 15 1_555 D DG 14 1_555 0.118 -0.229 0.776 -0.684 -3.942 -1.709 10 E_DC115:DG114_B E 115 ? B 114 ? 19 1 1 A DG 16 1_555 D DC 13 1_555 -0.233 -0.155 0.308 -2.533 -13.209 1.672 11 E_DG116:DC113_B E 116 ? B 113 ? 19 1 1 A DG 17 1_555 D DC 12 1_555 -0.243 -0.213 -0.560 -1.888 -13.598 3.008 12 E_DG117:DC112_B E 117 ? B 112 ? 19 1 1 A DA 18 1_555 B DT 9 1_555 0.923 0.072 0.257 -5.860 -11.614 2.235 13 E_DA118:DT208_H E 118 ? H 208 ? 20 1 1 A DC 19 1_555 B DG 8 1_555 0.289 0.043 0.175 1.066 -14.759 10.201 14 E_DC119:DG207_H E 119 ? H 207 ? 19 1 1 A DA 20 1_555 B DT 7 1_555 0.231 1.135 0.091 -4.898 -15.114 25.792 15 E_DA120:DT206_H E 120 ? H 206 ? ? ? 1 A DT 21 1_555 B DA 6 1_555 -0.041 -0.167 -0.154 -4.407 -7.797 12.154 16 E_DT121:DA205_H E 121 ? H 205 ? 20 1 1 A DC 22 1_555 B DG 5 1_555 0.223 -0.171 -0.123 -5.082 -3.125 6.058 17 E_DC122:DG204_H E 122 ? H 204 ? 19 1 1 A DA 23 1_555 B DT 4 1_555 0.196 -0.171 0.104 -4.421 -0.778 5.624 18 E_DA123:DT203_H E 123 ? H 203 ? 20 1 1 A DG 24 1_555 B DC 3 1_555 -0.267 -0.099 0.175 -4.957 3.741 3.205 19 E_DG124:DC202_H E 124 ? H 202 ? 19 1 1 E DC 3 1_555 G DG 24 1_555 0.208 -0.122 0.360 -8.906 0.094 -0.993 20 C_DC202:DG124_I C 202 ? I 124 ? 19 1 1 E DT 4 1_555 G DA 23 1_555 -0.182 -0.511 1.187 8.446 12.423 5.329 21 C_DT203:DA123_I C 203 ? I 123 ? 20 1 1 E DG 5 1_555 G DC 22 1_555 -0.212 -0.187 0.394 -2.532 -3.919 3.526 22 C_DG204:DC122_I C 204 ? I 122 ? 19 1 1 E DA 6 1_555 G DT 21 1_555 0.021 -0.232 0.588 -5.313 -1.923 8.804 23 C_DA205:DT121_I C 205 ? I 121 ? 20 1 1 E DT 7 1_555 G DA 20 1_555 -0.121 -0.134 0.240 0.807 -1.169 6.382 24 C_DT206:DA120_I C 206 ? I 120 ? 20 1 1 E DG 8 1_555 G DC 19 1_555 -0.214 -0.118 0.227 0.679 -3.188 2.077 25 C_DG207:DC119_I C 207 ? I 119 ? 19 1 1 E DT 9 1_555 G DA 18 1_555 -0.145 0.026 0.123 0.935 -5.986 -6.040 26 C_DT208:DA118_I C 208 ? I 118 ? 20 1 1 D DC 5 1_555 G DG 17 1_555 0.218 -0.158 -0.388 0.474 -13.136 1.973 27 B_DC105:DG117_I B 105 ? I 117 ? 19 1 1 D DC 6 1_555 G DG 16 1_555 0.175 -0.125 0.226 -2.369 -10.180 -1.052 28 B_DC106:DG116_I B 106 ? I 116 ? 19 1 1 D DG 7 1_555 G DC 15 1_555 -0.297 -0.339 -1.205 -12.054 -9.644 7.404 29 B_DG107:DC115_I B 107 ? I 115 ? 19 1 1 D DT 8 1_555 G DA 14 1_555 0.024 -0.208 -0.808 -12.182 -6.784 -3.472 30 B_DT108:DA114_I B 108 ? I 114 ? 20 1 1 D DA 9 1_555 G DT 13 1_555 0.094 -0.051 -0.222 -11.897 -3.603 0.901 31 B_DA109:DT113_I B 109 ? I 113 ? 20 1 1 D DC 10 1_555 G DG 12 1_555 0.189 -0.187 -0.053 -5.561 0.843 -0.401 32 B_DC110:DG112_I B 110 ? I 112 ? 19 1 1 D DA 11 1_555 G DT 11 1_555 0.240 -0.403 1.208 1.893 1.087 2.112 33 B_DA111:DT111_I B 111 ? I 111 ? 20 1 1 B DG 10 1_555 G DC 10 1_555 -0.135 -0.171 0.557 4.248 -6.606 -1.815 34 H_DG209:DC110_I H 209 ? I 110 ? 19 1 1 B DG 11 1_555 G DC 9 1_555 -0.185 -0.153 -0.416 2.973 -9.694 1.696 35 H_DG210:DC109_I H 210 ? I 109 ? 19 1 1 B DT 13 1_555 G DA 7 1_555 -0.174 -0.805 -1.872 -2.457 -12.818 -4.229 36 H_DT212:DA107_I H 212 ? I 107 ? 20 1 1 B DG 16 1_555 G DC 5 1_555 -1.165 -1.710 2.360 -12.518 -3.643 -11.552 37 H_DG215:DC105_I H 215 ? I 105 ? 19 1 1 C DG 3 1_555 E DC 17 1_555 1.126 3.313 2.240 6.539 15.521 161.351 38 A_DG103:DC216_C A 103 ? C 216 ? 22 2 1 C DC 5 1_555 E DG 15 1_555 0.119 -0.218 0.499 9.940 -13.558 -6.074 39 A_DC105:DG214_C A 105 ? C 214 ? 19 1 1 C DA 7 1_555 E DT 13 1_555 0.098 -0.322 -1.337 -8.761 -14.578 2.104 40 A_DA107:DT212_C A 107 ? C 212 ? 20 1 1 C DC 9 1_555 E DG 11 1_555 0.178 -0.155 -0.509 8.992 2.048 2.101 41 A_DC109:DG210_C A 109 ? C 210 ? 19 1 1 C DC 10 1_555 E DG 10 1_555 0.200 -0.180 -0.532 -0.872 -7.379 1.629 42 A_DC110:DG209_C A 110 ? C 209 ? 19 1 1 C DT 11 1_555 D DA 4 1_555 -0.118 -0.136 0.186 -2.021 11.013 -0.053 43 A_DT111:DA104_B A 111 ? B 104 ? 20 1 1 C DG 12 1_555 D DC 3 1_555 -0.237 -0.375 -1.321 -10.568 -9.343 4.894 44 A_DG112:DC103_B A 112 ? B 103 ? 19 1 1 C DT 13 1_555 D DA 2 1_555 -0.084 -0.108 -0.171 -3.773 -8.660 -0.363 45 A_DT113:DA102_B A 113 ? B 102 ? 20 1 1 C DA 14 1_555 D DT 1 1_555 -0.010 -0.075 0.157 -1.131 -0.030 -3.467 46 A_DA114:DT101_B A 114 ? B 101 ? 20 1 1 C DC 15 1_555 D DG 21 1_555 0.154 -0.365 1.107 3.716 -1.076 2.500 47 A_DC115:DG121_B A 115 ? B 121 ? 19 1 1 C DG 16 1_555 D DC 20 1_555 -0.270 -0.159 0.152 -12.317 -15.767 -2.461 48 A_DG116:DC120_B A 116 ? B 120 ? 19 1 1 C DG 17 1_555 D DC 19 1_555 -0.254 -0.187 -0.896 -11.858 -9.027 2.636 49 A_DG117:DC119_B A 117 ? B 119 ? 19 1 1 C DA 18 1_555 F DT 9 1_555 0.128 -0.273 0.474 2.819 -12.254 6.137 50 A_DA118:DT208_D A 118 ? D 208 ? 20 1 1 C DC 19 1_555 F DG 8 1_555 0.190 -0.136 0.236 -2.540 -12.082 2.137 51 A_DC119:DG207_D A 119 ? D 207 ? 19 1 1 C DA 20 1_555 F DT 7 1_555 1.113 0.712 0.423 -10.123 -11.185 26.037 52 A_DA120:DT206_D A 120 ? D 206 ? ? ? 1 C DT 21 1_555 F DA 6 1_555 -0.109 -0.112 0.257 -4.891 -4.954 1.673 53 A_DT121:DA205_D A 121 ? D 205 ? 20 1 1 C DC 22 1_555 F DG 5 1_555 0.200 -0.168 0.277 -3.835 0.376 3.784 54 A_DC122:DG204_D A 122 ? D 204 ? 19 1 1 C DA 23 1_555 F DT 4 1_555 0.039 -0.185 0.222 0.422 -0.486 7.020 55 A_DA123:DT203_D A 123 ? D 203 ? 20 1 1 C DG 24 1_555 F DC 3 1_555 -0.169 -0.114 0.403 9.239 -3.319 0.362 56 A_DG124:DC202_D A 124 ? D 202 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 F DC 17 1_555 A DC 5 1_555 F DG 15 1_555 2.742 -1.979 6.399 -7.442 -1.021 85.191 -1.414 -2.348 6.209 -0.753 5.488 85.458 1 EE_DG103DC105:DG214DC216_DD E 103 ? D 216 ? E 105 ? D 214 ? 1 A DC 5 1_555 F DG 15 1_555 A DA 7 1_555 F DT 13 1_555 0.356 -1.986 6.584 -3.767 -2.294 72.899 -1.519 -0.546 6.613 -1.928 3.167 73.014 2 EE_DC105DA107:DT212DG214_DD E 105 ? D 214 ? E 107 ? D 212 ? 1 A DA 7 1_555 F DT 13 1_555 A DC 9 1_555 F DG 11 1_555 -0.725 -0.433 6.578 -4.609 -12.817 72.817 0.464 0.307 6.598 -10.706 3.850 73.906 3 EE_DA107DC109:DG210DT212_DD E 107 ? D 212 ? E 109 ? D 210 ? 1 A DC 9 1_555 F DG 11 1_555 A DC 10 1_555 F DG 10 1_555 0.327 -0.624 3.270 -0.898 1.806 39.115 -1.146 -0.595 3.231 2.696 1.340 39.165 4 EE_DC109DC110:DG209DG210_DD E 109 ? D 210 ? E 110 ? D 209 ? 1 A DC 10 1_555 F DG 10 1_555 A DT 11 1_555 D DA 18 1_555 -1.922 -1.692 3.658 4.022 6.308 17.366 -8.335 7.883 2.398 19.744 -12.590 18.898 5 EE_DC110DT111:DA118DG209_BD E 110 ? D 209 ? E 111 ? B 118 ? 1 A DT 11 1_555 D DA 18 1_555 A DG 12 1_555 D DC 17 1_555 -0.190 0.175 3.909 -6.990 9.440 31.529 -1.571 -1.059 3.761 16.666 12.341 33.594 6 EE_DT111DG112:DC117DA118_BB E 111 ? B 118 ? E 112 ? B 117 ? 1 A DG 12 1_555 D DC 17 1_555 A DT 13 1_555 D DA 16 1_555 0.182 -0.319 3.469 1.313 2.757 35.377 -0.950 -0.096 3.440 4.526 -2.156 35.505 7 EE_DG112DT113:DA116DC117_BB E 112 ? B 117 ? E 113 ? B 116 ? 1 A DT 13 1_555 D DA 16 1_555 A DA 14 1_555 D DT 15 1_555 -1.382 -0.355 3.056 1.781 2.356 39.094 -0.788 2.256 2.968 3.514 -2.657 39.201 8 EE_DT113DA114:DT115DA116_BB E 113 ? B 116 ? E 114 ? B 115 ? 1 A DA 14 1_555 D DT 15 1_555 A DC 15 1_555 D DG 14 1_555 0.840 -0.670 3.400 -0.712 -0.643 31.787 -1.100 -1.669 3.393 -1.173 1.300 31.801 9 EE_DA114DC115:DG114DT115_BB E 114 ? B 115 ? E 115 ? B 114 ? 1 A DC 15 1_555 D DG 14 1_555 A DG 16 1_555 D DC 13 1_555 -1.019 2.946 3.630 6.033 -4.574 49.474 3.834 1.666 3.226 -5.429 -7.160 50.014 10 EE_DC115DG116:DC113DG114_BB E 115 ? B 114 ? E 116 ? B 113 ? 1 A DG 16 1_555 D DC 13 1_555 A DG 17 1_555 D DC 12 1_555 -0.352 1.863 3.492 -2.539 0.754 38.016 2.751 0.193 3.542 1.155 3.892 38.105 11 EE_DG116DG117:DC112DC113_BB E 116 ? B 113 ? E 117 ? B 112 ? 1 A DG 17 1_555 D DC 12 1_555 A DA 18 1_555 B DT 9 1_555 -2.040 -0.731 2.951 -14.549 6.381 33.637 -2.014 1.235 3.339 10.341 23.578 37.102 12 EE_DG117DA118:DT208DC112_HB E 117 ? B 112 ? E 118 ? H 208 ? 1 A DA 18 1_555 B DT 9 1_555 A DC 19 1_555 B DG 8 1_555 -0.094 -0.363 2.733 0.912 2.907 24.132 -1.619 0.460 2.666 6.918 -2.171 24.321 13 EE_DA118DC119:DG207DT208_HH E 118 ? H 208 ? E 119 ? H 207 ? 1 A DC 19 1_555 B DG 8 1_555 A DA 20 1_555 B DT 7 1_555 0.128 2.577 2.975 1.659 1.970 39.916 3.558 -0.010 3.096 2.882 -2.427 39.996 14 EE_DC119DA120:DT206DG207_HH E 119 ? H 207 ? E 120 ? H 206 ? 1 A DA 20 1_555 B DT 7 1_555 A DT 21 1_555 B DA 6 1_555 -1.104 1.284 2.906 -1.230 3.288 30.887 1.820 1.846 3.064 6.148 2.300 31.081 15 EE_DA120DT121:DA205DT206_HH E 120 ? H 206 ? E 121 ? H 205 ? 1 A DT 21 1_555 B DA 6 1_555 A DC 22 1_555 B DG 5 1_555 -0.338 0.755 3.068 -1.278 5.104 36.190 0.532 0.370 3.151 8.163 2.044 36.557 16 EE_DT121DC122:DG204DA205_HH E 121 ? H 205 ? E 122 ? H 204 ? 1 A DC 22 1_555 B DG 5 1_555 A DA 23 1_555 B DT 4 1_555 -0.236 -0.595 2.848 -2.063 8.094 35.759 -1.891 0.133 2.664 12.964 3.305 36.690 17 EE_DC122DA123:DT203DG204_HH E 122 ? H 204 ? E 123 ? H 203 ? 1 A DA 23 1_555 B DT 4 1_555 A DG 24 1_555 B DC 3 1_555 -0.561 -0.928 3.140 -4.265 3.423 41.651 -1.635 0.359 3.098 4.788 5.967 41.992 18 EE_DA123DG124:DC202DT203_HH E 123 ? H 203 ? E 124 ? H 202 ? 1 E DC 3 1_555 G DG 24 1_555 E DT 4 1_555 G DA 23 1_555 0.711 -0.042 3.513 -7.594 -1.092 39.754 0.069 -1.926 3.327 -1.588 11.042 40.458 19 CC_DC202DT203:DA123DG124_II C 202 ? I 124 ? C 203 ? I 123 ? 1 E DT 4 1_555 G DA 23 1_555 E DG 5 1_555 G DC 22 1_555 0.700 -1.123 3.050 7.780 17.114 33.403 -3.621 -0.204 2.329 27.259 -12.393 38.198 20 CC_DT203DG204:DC122DA123_II C 203 ? I 123 ? C 204 ? I 122 ? 1 E DG 5 1_555 G DC 22 1_555 E DA 6 1_555 G DT 21 1_555 -0.095 -0.206 3.106 -3.747 1.843 36.099 -0.574 -0.345 3.086 2.961 6.022 36.331 21 CC_DG204DA205:DT121DC122_II C 204 ? I 122 ? C 205 ? I 121 ? 1 E DA 6 1_555 G DT 21 1_555 E DT 7 1_555 G DA 20 1_555 0.433 0.484 3.430 -2.062 4.266 32.926 0.094 -1.120 3.431 7.478 3.614 33.256 22 CC_DA205DT206:DA120DT121_II C 205 ? I 121 ? C 206 ? I 120 ? 1 E DT 7 1_555 G DA 20 1_555 E DG 8 1_555 G DC 19 1_555 -0.119 1.096 3.231 -0.341 1.852 36.029 1.509 0.145 3.283 2.991 0.552 36.077 23 CC_DT206DG207:DC119DA120_II C 206 ? I 120 ? C 207 ? I 119 ? 1 E DG 8 1_555 G DC 19 1_555 E DT 9 1_555 G DA 18 1_555 -0.027 -1.113 3.163 0.127 2.003 25.222 -3.096 0.096 3.066 4.577 -0.289 25.300 24 CC_DG207DT208:DA118DC119_II C 207 ? I 119 ? C 208 ? I 118 ? 1 E DT 9 1_555 G DA 18 1_555 D DC 5 1_555 G DG 17 1_555 1.429 -0.426 2.947 8.587 5.331 34.542 -1.409 -1.158 3.105 8.748 -14.091 35.947 25 CB_DT208DC105:DG117DA118_II C 208 ? I 118 ? B 105 ? I 117 ? 1 D DC 5 1_555 G DG 17 1_555 D DC 6 1_555 G DG 16 1_555 -0.365 2.356 3.765 1.044 -5.059 43.095 3.732 0.606 3.470 -6.858 -1.416 43.389 26 BB_DC105DC106:DG116DG117_II B 105 ? I 117 ? B 106 ? I 116 ? 1 D DC 6 1_555 G DG 16 1_555 D DG 7 1_555 G DC 15 1_555 -0.172 3.090 3.636 3.442 1.565 44.634 3.895 0.578 3.714 2.056 -4.523 44.785 27 BB_DC106DG107:DC115DG116_II B 106 ? I 116 ? B 107 ? I 115 ? 1 D DG 7 1_555 G DC 15 1_555 D DT 8 1_555 G DA 14 1_555 -0.462 -0.300 3.264 -2.877 4.544 28.032 -1.642 0.283 3.206 9.273 5.872 28.533 28 BB_DG107DT108:DA114DC115_II B 107 ? I 115 ? B 108 ? I 114 ? 1 D DT 8 1_555 G DA 14 1_555 D DA 9 1_555 G DT 13 1_555 1.214 1.156 3.350 -4.706 6.078 38.775 0.974 -2.366 3.323 9.046 7.004 39.501 29 BB_DT108DA109:DT113DA114_II B 108 ? I 114 ? B 109 ? I 113 ? 1 D DA 9 1_555 G DT 13 1_555 D DC 10 1_555 G DG 12 1_555 -0.515 0.698 3.434 -7.525 4.218 39.045 0.500 -0.177 3.524 6.219 11.094 39.951 30 BB_DA109DC110:DG112DT113_II B 109 ? I 113 ? B 110 ? I 112 ? 1 D DC 10 1_555 G DG 12 1_555 D DA 11 1_555 G DT 11 1_555 0.432 -0.481 3.792 -1.299 9.192 32.337 -2.544 -0.990 3.508 16.095 2.274 33.608 31 BB_DC110DA111:DT111DG112_II B 110 ? I 112 ? B 111 ? I 111 ? 1 D DA 11 1_555 G DT 11 1_555 B DG 10 1_555 G DC 10 1_555 1.026 -1.645 3.199 4.845 4.080 20.639 -5.970 -0.868 2.981 11.057 -13.130 21.579 32 BH_DA111DG209:DC110DT111_II B 111 ? I 111 ? H 209 ? I 110 ? 1 B DG 10 1_555 G DC 10 1_555 B DG 11 1_555 G DC 9 1_555 -0.541 -0.771 3.342 3.214 -0.482 41.619 -1.030 1.103 3.301 -0.677 -4.514 41.740 33 HH_DG209DG210:DC109DC110_II H 209 ? I 110 ? H 210 ? I 109 ? 1 B DG 11 1_555 G DC 9 1_555 B DT 13 1_555 G DA 7 1_555 -1.334 -0.112 6.731 4.531 -5.508 72.171 0.277 1.435 6.642 -4.664 -3.837 72.475 34 HH_DG210DT212:DA107DC109_II H 210 ? I 109 ? H 212 ? I 107 ? 1 C DC 5 1_555 E DG 15 1_555 C DA 7 1_555 E DT 13 1_555 -0.962 0.290 6.524 9.242 -0.881 85.863 0.251 1.113 6.414 -0.645 -6.767 86.266 35 AA_DC105DA107:DT212DG214_CC A 105 ? C 214 ? A 107 ? C 212 ? 1 C DA 7 1_555 E DT 13 1_555 C DC 9 1_555 E DG 11 1_555 0.363 1.807 5.777 -6.264 -7.572 70.394 2.011 -0.688 5.539 -6.537 5.408 70.989 36 AA_DA107DC109:DG210DT212_CC A 107 ? C 212 ? A 109 ? C 210 ? 1 C DC 9 1_555 E DG 11 1_555 C DC 10 1_555 E DG 10 1_555 -0.280 -0.526 3.529 -1.945 -3.230 41.498 -0.369 0.171 3.567 -4.548 2.738 41.661 37 AA_DC109DC110:DG209DG210_CC A 109 ? C 210 ? A 110 ? C 209 ? 1 C DC 10 1_555 E DG 10 1_555 C DT 11 1_555 D DA 4 1_555 -1.960 -1.947 3.374 -4.461 9.234 23.903 -6.817 3.157 2.758 21.094 10.192 25.981 38 AA_DC110DT111:DA104DG209_BC A 110 ? C 209 ? A 111 ? B 104 ? 1 C DT 11 1_555 D DA 4 1_555 C DG 12 1_555 D DC 3 1_555 0.763 -0.798 3.677 6.457 28.874 24.068 -5.131 -0.300 1.887 50.463 -11.284 37.970 39 AA_DT111DG112:DC103DA104_BB A 111 ? B 104 ? A 112 ? B 103 ? 1 C DG 12 1_555 D DC 3 1_555 C DT 13 1_555 D DA 2 1_555 -0.893 1.499 3.560 -2.095 -0.573 36.462 2.479 1.109 3.581 -0.915 3.344 36.525 40 AA_DG112DT113:DA102DC103_BB A 112 ? B 103 ? A 113 ? B 102 ? 1 C DT 13 1_555 D DA 2 1_555 C DA 14 1_555 D DT 1 1_555 -1.479 0.056 3.051 -6.156 8.661 36.453 -0.992 1.510 3.181 13.496 9.593 37.920 41 AA_DT113DA114:DT101DA102_BB A 113 ? B 102 ? A 114 ? B 101 ? 1 C DA 14 1_555 D DT 1 1_555 C DC 15 1_555 D DG 21 1_555 0.237 -0.403 3.116 -7.454 2.068 35.411 -0.922 -1.369 2.980 3.351 12.078 36.220 42 AA_DA114DC115:DG121DT101_BB A 114 ? B 101 ? A 115 ? B 121 ? 1 C DC 15 1_555 D DG 21 1_555 C DG 16 1_555 D DC 20 1_555 -0.977 3.081 3.752 -1.148 -10.178 48.609 4.467 1.074 3.108 -12.207 1.376 49.612 43 AA_DC115DG116:DC120DG121_BB A 115 ? B 121 ? A 116 ? B 120 ? 1 C DG 16 1_555 D DC 20 1_555 C DG 17 1_555 D DC 19 1_555 0.170 1.360 3.525 -3.368 2.786 37.590 1.708 -0.735 3.585 4.306 5.205 37.835 44 AA_DG116DG117:DC119DC120_BB A 116 ? B 120 ? A 117 ? B 119 ? 1 C DG 17 1_555 D DC 19 1_555 C DA 18 1_555 F DT 9 1_555 -0.737 -0.352 2.664 -17.068 2.589 26.449 -1.073 -1.447 2.609 5.033 33.187 31.500 45 AA_DG117DA118:DT208DC119_DB A 117 ? B 119 ? A 118 ? D 208 ? 1 C DA 18 1_555 F DT 9 1_555 C DC 19 1_555 F DG 8 1_555 -1.020 0.165 3.118 0.185 0.586 32.310 0.198 1.863 3.114 1.053 -0.332 32.315 46 AA_DA118DC119:DG207DT208_DD A 118 ? D 208 ? A 119 ? D 207 ? 1 C DC 19 1_555 F DG 8 1_555 C DA 20 1_555 F DT 7 1_555 0.509 2.388 3.095 -1.265 1.433 44.704 3.012 -0.779 3.152 1.882 1.663 44.742 47 AA_DC119DA120:DT206DG207_DD A 119 ? D 207 ? A 120 ? D 206 ? 1 C DA 20 1_555 F DT 7 1_555 C DT 21 1_555 F DA 6 1_555 -1.654 0.366 2.829 -0.789 3.687 23.756 -0.167 3.746 2.904 8.884 1.902 24.050 48 AA_DA120DT121:DA205DT206_DD A 120 ? D 206 ? A 121 ? D 205 ? 1 C DT 21 1_555 F DA 6 1_555 C DC 22 1_555 F DG 5 1_555 -0.112 0.335 3.049 -0.512 6.762 32.968 -0.463 0.115 3.057 11.761 0.891 33.639 49 AA_DT121DC122:DG204DA205_DD A 121 ? D 205 ? A 122 ? D 204 ? 1 C DC 22 1_555 F DG 5 1_555 C DA 23 1_555 F DT 4 1_555 0.169 -0.412 2.787 2.675 9.794 33.286 -1.943 0.059 2.572 16.623 -4.540 34.758 50 AA_DC122DA123:DT203DG204_DD A 122 ? D 204 ? A 123 ? D 203 ? 1 C DA 23 1_555 F DT 4 1_555 C DG 24 1_555 F DC 3 1_555 -0.918 2.216 3.497 -0.652 10.890 47.123 1.737 1.064 3.900 13.411 0.803 48.299 51 AA_DA123DG124:DC202DT203_DD A 123 ? D 203 ? A 124 ? D 202 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' CTS1120890 1 'National Science Foundation (NSF, United States)' 'United States' CCF-1117210 2 'National Science Foundation (NSF, United States)' 'United States' EFRI-1332411 3 'National Science Foundation (NSF, United States)' 'United States' CHE-1708776 4 'Office of Naval Research (ONR)' 'United States' N000141110729 5 'Office of Naval Research (ONR)' 'United States' N000140911118 6 'Department of Energy (DOE, United States)' 'United States' DESC0007991 7 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GBI _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 32 2 1' _space_group.name_Hall ;P 32 2" ; _space_group.IT_number 154 _space_group.crystal_system trigonal _space_group.id 1 #