HEADER SIGNALING PROTEIN 24-JUN-22 8DGQ TITLE CRYSTAL STRUCTURE OF P120RASGAP SH2-SH3-SH2 IN COMPLEX WITH P190RHOGAP TITLE 2 DOUBLY PHOSPHORYLATED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAP,GTPASE-ACTIVATING PROTEIN,RASGAP,RAS P21 PROTEIN COMPND 5 ACTIVATOR,P120GAP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 35; COMPND 9 CHAIN: U, V; COMPND 10 SYNONYM: GLUCOCORTICOID RECEPTOR DNA-BINDING FACTOR 1,GLUCOCORTICOID COMPND 11 RECEPTOR REPRESSION FACTOR 1,GRF-1,RHO GAP P190A,P190-A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RASA1, GAP, RASA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS SH2 DOMAIN, SH3 DOMAIN, PHOSPHOTYROSINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.STIEGLER,K.J.VISH,T.J.BOGGON REVDAT 4 15-NOV-23 8DGQ 1 REMARK REVDAT 3 25-OCT-23 8DGQ 1 REMARK REVDAT 2 14-DEC-22 8DGQ 1 JRNL REVDAT 1 02-NOV-22 8DGQ 0 JRNL AUTH A.L.STIEGLER,K.J.VISH,T.J.BOGGON JRNL TITL TANDEM ENGAGEMENT OF PHOSPHOTYROSINES BY THE DUAL SH2 JRNL TITL 2 DOMAINS OF P120RASGAP. JRNL REF STRUCTURE V. 30 1603 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 36417908 JRNL DOI 10.1016/J.STR.2022.10.009 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.630 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6500 - 4.7000 1.00 4051 153 0.1995 0.2353 REMARK 3 2 4.7000 - 3.7300 1.00 3894 148 0.1639 0.1931 REMARK 3 3 3.7300 - 3.2600 1.00 3840 143 0.1865 0.2421 REMARK 3 4 3.2600 - 2.9600 1.00 3828 148 0.2159 0.2371 REMARK 3 5 2.9600 - 2.7500 1.00 3788 133 0.2280 0.2951 REMARK 3 6 2.7500 - 2.5900 1.00 3813 150 0.2400 0.2822 REMARK 3 7 2.5900 - 2.4600 1.00 3796 144 0.2516 0.3098 REMARK 3 8 2.4600 - 2.3500 1.00 3766 147 0.2505 0.3053 REMARK 3 9 2.3500 - 2.2600 1.00 3773 135 0.2470 0.2667 REMARK 3 10 2.2600 - 2.1800 1.00 3777 137 0.2545 0.3120 REMARK 3 11 2.1800 - 2.1100 1.00 3752 141 0.2712 0.3120 REMARK 3 12 2.1100 - 2.0500 1.00 3763 148 0.2811 0.3398 REMARK 3 13 2.0500 - 2.0000 1.00 3765 139 0.3221 0.3950 REMARK 3 14 2.0000 - 1.9500 1.00 3760 144 0.3735 0.4379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4630 71.7593 116.3373 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.2961 REMARK 3 T33: 0.2409 T12: -0.0495 REMARK 3 T13: -0.0330 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.9540 L22: 8.3543 REMARK 3 L33: 6.4947 L12: 0.4577 REMARK 3 L13: 0.4916 L23: 0.6907 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0776 S13: 0.0543 REMARK 3 S21: 0.3483 S22: 0.0827 S23: -0.2070 REMARK 3 S31: -0.5518 S32: 0.2175 S33: -0.0362 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6255 52.8856 90.1496 REMARK 3 T TENSOR REMARK 3 T11: 0.3332 T22: 0.4531 REMARK 3 T33: 0.4522 T12: 0.0148 REMARK 3 T13: -0.0411 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 3.3653 L22: 4.3857 REMARK 3 L33: 3.0424 L12: 4.1875 REMARK 3 L13: 2.4801 L23: 2.7902 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.0289 S13: 0.4277 REMARK 3 S21: 0.3191 S22: -0.1363 S23: 0.5093 REMARK 3 S31: 0.1290 S32: -0.1894 S33: 0.1831 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3840 48.1464 84.3965 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.4555 REMARK 3 T33: 0.3784 T12: -0.0128 REMARK 3 T13: -0.0923 T23: 0.1161 REMARK 3 L TENSOR REMARK 3 L11: 4.3840 L22: 3.8803 REMARK 3 L33: 4.4139 L12: 1.7348 REMARK 3 L13: 0.4598 L23: 2.3189 REMARK 3 S TENSOR REMARK 3 S11: -0.1989 S12: 0.8916 S13: 0.4533 REMARK 3 S21: -0.2317 S22: 0.1255 S23: 0.2915 REMARK 3 S31: -0.2735 S32: -0.3121 S33: 0.0310 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1415 43.6066 108.3792 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2170 REMARK 3 T33: 0.2489 T12: -0.0045 REMARK 3 T13: -0.0686 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 5.1953 L22: 3.5835 REMARK 3 L33: 3.3454 L12: -1.8246 REMARK 3 L13: -0.0066 L23: -0.9226 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0073 S13: -0.0523 REMARK 3 S21: 0.0077 S22: 0.0996 S23: 0.1390 REMARK 3 S31: 0.2093 S32: -0.0175 S33: -0.0798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3199 70.8560 71.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.2844 REMARK 3 T33: 0.2590 T12: 0.0022 REMARK 3 T13: -0.0337 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 3.9615 L22: 6.9006 REMARK 3 L33: 8.4885 L12: 0.2914 REMARK 3 L13: -0.8578 L23: -2.9805 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.0889 S13: 0.0833 REMARK 3 S21: 0.1343 S22: 0.1484 S23: 0.1074 REMARK 3 S31: -0.7410 S32: -0.3710 S33: -0.0940 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 268 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0807 57.5136 93.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 0.3409 REMARK 3 T33: 0.3882 T12: -0.0002 REMARK 3 T13: -0.0573 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 3.4605 L22: 4.2987 REMARK 3 L33: 3.5398 L12: -4.5248 REMARK 3 L13: 3.2804 L23: -3.5196 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.0105 S13: 0.5218 REMARK 3 S21: -0.2199 S22: -0.1810 S23: -0.7805 REMARK 3 S31: -0.1988 S32: 0.2207 S33: 0.1329 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 292 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6603 47.4353 103.7576 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.4995 REMARK 3 T33: 0.4205 T12: -0.0204 REMARK 3 T13: -0.0925 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 4.6554 L22: 3.6316 REMARK 3 L33: 6.2342 L12: -2.6992 REMARK 3 L13: 0.1069 L23: -2.1017 REMARK 3 S TENSOR REMARK 3 S11: -0.1744 S12: -0.6741 S13: 0.2666 REMARK 3 S21: 0.1491 S22: 0.1601 S23: 0.1555 REMARK 3 S31: -0.2380 S32: 0.1018 S33: 0.0357 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 349 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1011 43.0636 79.0283 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.2800 REMARK 3 T33: 0.2317 T12: -0.0413 REMARK 3 T13: -0.0736 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.6761 L22: 4.7227 REMARK 3 L33: 4.4346 L12: 0.8325 REMARK 3 L13: -1.0830 L23: 1.1251 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: 0.0558 S13: -0.3122 REMARK 3 S21: 0.0107 S22: 0.1301 S23: -0.1674 REMARK 3 S31: 0.4193 S32: -0.1459 S33: -0.0597 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'U' AND (RESID 1085 THROUGH 1099 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7204 47.5822 118.5579 REMARK 3 T TENSOR REMARK 3 T11: 0.5725 T22: 0.5713 REMARK 3 T33: 0.5136 T12: -0.0499 REMARK 3 T13: -0.0404 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 2.4861 L22: 6.8167 REMARK 3 L33: 8.6972 L12: -3.4322 REMARK 3 L13: -0.1835 L23: 0.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: 0.7342 S13: 0.7422 REMARK 3 S21: 1.0827 S22: -0.1164 S23: -0.5401 REMARK 3 S31: -1.0403 S32: 0.1604 S33: -0.0019 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'U' AND (RESID 1100 THROUGH 1109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7803 67.4462 126.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.6339 T22: 0.7169 REMARK 3 T33: 0.2891 T12: -0.1330 REMARK 3 T13: -0.1176 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 7.6663 L22: 0.7698 REMARK 3 L33: 8.1517 L12: -1.9053 REMARK 3 L13: 1.3492 L23: 1.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: -0.8453 S13: -0.1762 REMARK 3 S21: 1.4586 S22: -0.0102 S23: -1.1209 REMARK 3 S31: 0.5795 S32: 0.5221 S33: -0.0268 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 1084 THROUGH 1089 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9770 47.6587 68.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.4898 T22: 0.8647 REMARK 3 T33: 0.4651 T12: -0.0940 REMARK 3 T13: 0.0210 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 4.3898 L22: 5.5934 REMARK 3 L33: 4.3705 L12: 4.9211 REMARK 3 L13: 0.1171 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: -0.0200 S13: -0.0846 REMARK 3 S21: -1.0164 S22: 0.2134 S23: -0.6297 REMARK 3 S31: -0.5089 S32: 0.5643 S33: 0.4976 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 1090 THROUGH 1094 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9668 40.3258 73.0716 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.9324 REMARK 3 T33: 0.3808 T12: -0.1662 REMARK 3 T13: -0.0689 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 9.4235 L22: 9.6840 REMARK 3 L33: 4.4029 L12: 3.1067 REMARK 3 L13: -2.8704 L23: 1.8779 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: -0.6157 S13: -0.7011 REMARK 3 S21: -0.1820 S22: -0.7736 S23: 0.4986 REMARK 3 S31: 0.1383 S32: -0.5515 S33: 0.3593 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 1103 THROUGH 1108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0393 67.2970 62.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.5266 REMARK 3 T33: 0.2915 T12: 0.0582 REMARK 3 T13: -0.0203 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 9.0395 L22: 0.0679 REMARK 3 L33: 8.3382 L12: -0.4199 REMARK 3 L13: 2.4818 L23: 0.4951 REMARK 3 S TENSOR REMARK 3 S11: 0.2797 S12: 0.1732 S13: 0.0558 REMARK 3 S21: -0.2997 S22: -0.3022 S23: -0.3041 REMARK 3 S31: 0.8668 S32: -0.2742 S33: -0.1077 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 1109 THROUGH 1111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0776 81.4359 62.2573 REMARK 3 T TENSOR REMARK 3 T11: 1.1219 T22: 1.0260 REMARK 3 T33: 0.4546 T12: -0.0325 REMARK 3 T13: 0.1346 T23: 0.1108 REMARK 3 L TENSOR REMARK 3 L11: 1.0515 L22: 1.1307 REMARK 3 L33: 5.9572 L12: 0.7239 REMARK 3 L13: -0.0845 L23: -1.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.1216 S13: 0.5089 REMARK 3 S21: 0.9706 S22: 0.6473 S23: 0.4798 REMARK 3 S31: -1.0033 S32: -0.1465 S33: -0.6192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 173 THROUGH 390 OR REMARK 3 RESID 392 THROUGH 409 OR RESID 411 REMARK 3 THROUGH 443)) REMARK 3 SELECTION : (CHAIN B AND (RESID 173 THROUGH 390 OR REMARK 3 RESID 392 THROUGH 409 OR RESID 411 REMARK 3 THROUGH 443)) REMARK 3 ATOM PAIRS NUMBER : 2682 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000262729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.45 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.03 REMARK 200 R MERGE FOR SHELL (I) : 2.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 2GSB, 2J05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M SODIUM MALONATE PH 5.0, 0.1 M REMARK 280 SODIUM ACETATE TRIHYDRATE SALT, 6% PEG 20,000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 444 REMARK 465 GLY B 172 REMARK 465 GLN B 444 REMARK 465 ASP U 1083 REMARK 465 PRO U 1084 REMARK 465 ASP U 1110 REMARK 465 SER U 1111 REMARK 465 ASP V 1083 REMARK 465 VAL V 1095 REMARK 465 LYS V 1096 REMARK 465 PRO V 1097 REMARK 465 ARG V 1098 REMARK 465 ASN V 1099 REMARK 465 GLU V 1100 REMARK 465 GLU V 1101 REMARK 465 GLU V 1102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 179 0.38 -69.35 REMARK 500 TRP A 181 -4.75 -146.04 REMARK 500 SER A 236 -134.06 53.79 REMARK 500 LYS A 438 -96.96 -109.13 REMARK 500 TRP B 181 -3.51 -145.45 REMARK 500 SER B 236 -132.70 53.74 REMARK 500 LYS B 438 -98.41 -109.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 700 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 710 DISTANCE = 8.52 ANGSTROMS DBREF 8DGQ A 174 444 UNP P20936 RASA1_HUMAN 174 444 DBREF 8DGQ B 174 444 UNP P20936 RASA1_HUMAN 174 444 DBREF 8DGQ U 1083 1111 UNP Q9NRY4 RHG35_HUMAN 1083 1111 DBREF 8DGQ V 1083 1111 UNP Q9NRY4 RHG35_HUMAN 1083 1111 SEQADV 8DGQ GLY A 172 UNP P20936 EXPRESSION TAG SEQADV 8DGQ SER A 173 UNP P20936 EXPRESSION TAG SEQADV 8DGQ SER A 236 UNP P20936 CYS 236 CONFLICT SEQADV 8DGQ SER A 261 UNP P20936 CYS 261 CONFLICT SEQADV 8DGQ SER A 372 UNP P20936 CYS 372 CONFLICT SEQADV 8DGQ SER A 402 UNP P20936 CYS 402 CONFLICT SEQADV 8DGQ GLY B 172 UNP P20936 EXPRESSION TAG SEQADV 8DGQ SER B 173 UNP P20936 EXPRESSION TAG SEQADV 8DGQ SER B 236 UNP P20936 CYS 236 CONFLICT SEQADV 8DGQ SER B 261 UNP P20936 CYS 261 CONFLICT SEQADV 8DGQ SER B 372 UNP P20936 CYS 372 CONFLICT SEQADV 8DGQ SER B 402 UNP P20936 CYS 402 CONFLICT SEQRES 1 A 273 GLY SER THR ALA PRO PRO THR ASN GLN TRP TYR HIS GLY SEQRES 2 A 273 LYS LEU ASP ARG THR ILE ALA GLU GLU ARG LEU ARG GLN SEQRES 3 A 273 ALA GLY LYS SER GLY SER TYR LEU ILE ARG GLU SER ASP SEQRES 4 A 273 ARG ARG PRO GLY SER PHE VAL LEU SER PHE LEU SER GLN SEQRES 5 A 273 MET ASN VAL VAL ASN HIS PHE ARG ILE ILE ALA MET SER SEQRES 6 A 273 GLY ASP TYR TYR ILE GLY GLY ARG ARG PHE SER SER LEU SEQRES 7 A 273 SER ASP LEU ILE GLY TYR TYR SER HIS VAL SER SER LEU SEQRES 8 A 273 LEU LYS GLY GLU LYS LEU LEU TYR PRO VAL ALA PRO PRO SEQRES 9 A 273 GLU PRO VAL GLU ASP ARG ARG ARG VAL ARG ALA ILE LEU SEQRES 10 A 273 PRO TYR THR LYS VAL PRO ASP THR ASP GLU ILE SER PHE SEQRES 11 A 273 LEU LYS GLY ASP MET PHE ILE VAL HIS ASN GLU LEU GLU SEQRES 12 A 273 ASP GLY TRP MET TRP VAL THR ASN LEU ARG THR ASP GLU SEQRES 13 A 273 GLN GLY LEU ILE VAL GLU ASP LEU VAL GLU GLU VAL GLY SEQRES 14 A 273 ARG GLU GLU ASP PRO HIS GLU GLY LYS ILE TRP PHE HIS SEQRES 15 A 273 GLY LYS ILE SER LYS GLN GLU ALA TYR ASN LEU LEU MET SEQRES 16 A 273 THR VAL GLY GLN VAL SER SER PHE LEU VAL ARG PRO SER SEQRES 17 A 273 ASP ASN THR PRO GLY ASP TYR SER LEU TYR PHE ARG THR SEQRES 18 A 273 ASN GLU ASN ILE GLN ARG PHE LYS ILE SER PRO THR PRO SEQRES 19 A 273 ASN ASN GLN PHE MET MET GLY GLY ARG TYR TYR ASN SER SEQRES 20 A 273 ILE GLY ASP ILE ILE ASP HIS TYR ARG LYS GLU GLN ILE SEQRES 21 A 273 VAL GLU GLY TYR TYR LEU LYS GLU PRO VAL PRO MET GLN SEQRES 1 B 273 GLY SER THR ALA PRO PRO THR ASN GLN TRP TYR HIS GLY SEQRES 2 B 273 LYS LEU ASP ARG THR ILE ALA GLU GLU ARG LEU ARG GLN SEQRES 3 B 273 ALA GLY LYS SER GLY SER TYR LEU ILE ARG GLU SER ASP SEQRES 4 B 273 ARG ARG PRO GLY SER PHE VAL LEU SER PHE LEU SER GLN SEQRES 5 B 273 MET ASN VAL VAL ASN HIS PHE ARG ILE ILE ALA MET SER SEQRES 6 B 273 GLY ASP TYR TYR ILE GLY GLY ARG ARG PHE SER SER LEU SEQRES 7 B 273 SER ASP LEU ILE GLY TYR TYR SER HIS VAL SER SER LEU SEQRES 8 B 273 LEU LYS GLY GLU LYS LEU LEU TYR PRO VAL ALA PRO PRO SEQRES 9 B 273 GLU PRO VAL GLU ASP ARG ARG ARG VAL ARG ALA ILE LEU SEQRES 10 B 273 PRO TYR THR LYS VAL PRO ASP THR ASP GLU ILE SER PHE SEQRES 11 B 273 LEU LYS GLY ASP MET PHE ILE VAL HIS ASN GLU LEU GLU SEQRES 12 B 273 ASP GLY TRP MET TRP VAL THR ASN LEU ARG THR ASP GLU SEQRES 13 B 273 GLN GLY LEU ILE VAL GLU ASP LEU VAL GLU GLU VAL GLY SEQRES 14 B 273 ARG GLU GLU ASP PRO HIS GLU GLY LYS ILE TRP PHE HIS SEQRES 15 B 273 GLY LYS ILE SER LYS GLN GLU ALA TYR ASN LEU LEU MET SEQRES 16 B 273 THR VAL GLY GLN VAL SER SER PHE LEU VAL ARG PRO SER SEQRES 17 B 273 ASP ASN THR PRO GLY ASP TYR SER LEU TYR PHE ARG THR SEQRES 18 B 273 ASN GLU ASN ILE GLN ARG PHE LYS ILE SER PRO THR PRO SEQRES 19 B 273 ASN ASN GLN PHE MET MET GLY GLY ARG TYR TYR ASN SER SEQRES 20 B 273 ILE GLY ASP ILE ILE ASP HIS TYR ARG LYS GLU GLN ILE SEQRES 21 B 273 VAL GLU GLY TYR TYR LEU LYS GLU PRO VAL PRO MET GLN SEQRES 1 U 29 ASP PRO SER ASP PTR ALA GLU PRO MET ASP ALA VAL VAL SEQRES 2 U 29 LYS PRO ARG ASN GLU GLU GLU ASN ILE PTR SER VAL PRO SEQRES 3 U 29 HIS ASP SER SEQRES 1 V 29 ASP PRO SER ASP PTR ALA GLU PRO MET ASP ALA VAL VAL SEQRES 2 V 29 LYS PRO ARG ASN GLU GLU GLU ASN ILE PTR SER VAL PRO SEQRES 3 V 29 HIS ASP SER MODRES 8DGQ PTR U 1087 TYR MODIFIED RESIDUE MODRES 8DGQ PTR U 1105 TYR MODIFIED RESIDUE MODRES 8DGQ PTR V 1087 TYR MODIFIED RESIDUE MODRES 8DGQ PTR V 1105 TYR MODIFIED RESIDUE HET PTR U1087 16 HET PTR U1105 16 HET PTR V1087 16 HET PTR V1105 16 HET MLI A 501 7 HET MLI A 502 7 HET MLI B 501 7 HETNAM PTR O-PHOSPHOTYROSINE HETNAM MLI MALONATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 3 PTR 4(C9 H12 N O6 P) FORMUL 5 MLI 3(C3 H2 O4 2-) FORMUL 8 HOH *233(H2 O) HELIX 1 AA1 PRO A 177 GLN A 180 5 4 HELIX 2 AA2 ASP A 187 GLY A 199 1 13 HELIX 3 AA3 GLN A 223 ASN A 225 5 3 HELIX 4 AA4 SER A 248 VAL A 259 1 12 HELIX 5 AA5 SER A 357 VAL A 368 1 12 HELIX 6 AA6 SER A 418 GLU A 429 1 12 HELIX 7 AA7 PRO B 177 GLN B 180 5 4 HELIX 8 AA8 ASP B 187 GLY B 199 1 13 HELIX 9 AA9 SER B 248 SER B 257 1 10 HELIX 10 AB1 SER B 357 VAL B 368 1 12 HELIX 11 AB2 SER B 418 GLU B 429 1 12 HELIX 12 AB3 ASN U 1099 ASN U 1103 5 5 SHEET 1 AA1 6 TYR A 182 LEU A 186 0 SHEET 2 AA1 6 SER A 203 SER A 209 1 O ILE A 206 N HIS A 183 SHEET 3 AA1 6 PHE A 216 LEU A 221 -1 O LEU A 221 N SER A 203 SHEET 4 AA1 6 VAL A 227 MET A 235 -1 O ILE A 232 N PHE A 216 SHEET 5 AA1 6 ASP A 238 ILE A 241 -1 O TYR A 240 N ILE A 233 SHEET 6 AA1 6 ARG A 244 PHE A 246 -1 O PHE A 246 N TYR A 239 SHEET 1 AA2 3 TYR A 182 LEU A 186 0 SHEET 2 AA2 3 SER A 203 SER A 209 1 O ILE A 206 N HIS A 183 SHEET 3 AA2 3 TYR A 270 PRO A 271 1 O TYR A 270 N TYR A 204 SHEET 1 AA3 5 GLN A 328 VAL A 332 0 SHEET 2 AA3 5 TRP A 317 ASN A 322 -1 N VAL A 320 O GLY A 329 SHEET 3 AA3 5 MET A 306 GLU A 312 -1 N HIS A 310 O TRP A 319 SHEET 4 AA3 5 ARG A 282 ALA A 286 -1 N ARG A 282 O VAL A 309 SHEET 5 AA3 5 VAL A 336 GLU A 338 -1 O GLU A 337 N ARG A 285 SHEET 1 AA4 5 PHE A 374 PRO A 378 0 SHEET 2 AA4 5 TYR A 386 ARG A 391 -1 O SER A 387 N ARG A 377 SHEET 3 AA4 5 ILE A 396 PRO A 403 -1 O ILE A 401 N TYR A 386 SHEET 4 AA4 5 PHE A 409 MET A 411 -1 O MET A 410 N SER A 402 SHEET 5 AA4 5 ARG A 414 TYR A 416 -1 O TYR A 416 N PHE A 409 SHEET 1 AA5 6 TYR B 182 LEU B 186 0 SHEET 2 AA5 6 SER B 203 SER B 209 1 O GLU B 208 N GLY B 184 SHEET 3 AA5 6 SER B 215 LEU B 221 -1 O LEU B 221 N SER B 203 SHEET 4 AA5 6 VAL B 227 MET B 235 -1 O ILE B 232 N PHE B 216 SHEET 5 AA5 6 ASP B 238 ILE B 241 -1 O TYR B 240 N ILE B 233 SHEET 6 AA5 6 ARG B 244 PHE B 246 -1 O PHE B 246 N TYR B 239 SHEET 1 AA6 3 TYR B 182 LEU B 186 0 SHEET 2 AA6 3 SER B 203 SER B 209 1 O GLU B 208 N GLY B 184 SHEET 3 AA6 3 TYR B 270 PRO B 271 1 O TYR B 270 N TYR B 204 SHEET 1 AA7 5 GLN B 328 VAL B 332 0 SHEET 2 AA7 5 TRP B 317 ASN B 322 -1 N VAL B 320 O GLY B 329 SHEET 3 AA7 5 MET B 306 GLU B 312 -1 N HIS B 310 O TRP B 319 SHEET 4 AA7 5 ARG B 282 ALA B 286 -1 N ARG B 282 O VAL B 309 SHEET 5 AA7 5 VAL B 336 GLU B 338 -1 O GLU B 337 N ARG B 285 SHEET 1 AA8 5 PHE B 374 PRO B 378 0 SHEET 2 AA8 5 TYR B 386 ARG B 391 -1 O TYR B 389 N LEU B 375 SHEET 3 AA8 5 ILE B 396 PRO B 403 -1 O ILE B 401 N TYR B 386 SHEET 4 AA8 5 PHE B 409 MET B 411 -1 O MET B 410 N SER B 402 SHEET 5 AA8 5 ARG B 414 TYR B 416 -1 O TYR B 416 N PHE B 409 LINK C ASP U1086 N PTR U1087 1555 1555 1.33 LINK C PTR U1087 N ALA U1088 1555 1555 1.33 LINK C ILE U1104 N PTR U1105 1555 1555 1.33 LINK C PTR U1105 N SER U1106 1555 1555 1.33 LINK C ASP V1086 N PTR V1087 1555 1555 1.33 LINK C PTR V1087 N ALA V1088 1555 1555 1.33 LINK C ILE V1104 N PTR V1105 1555 1555 1.33 LINK C PTR V1105 N SER V1106 1555 1555 1.33 CRYST1 55.210 113.500 119.070 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008398 0.00000