HEADER MEMBRANE PROTEIN 07-JUL-22 8DL6 TITLE CRYO-EM STRUCTURE OF HUMAN FERROPORTIN/SLC40 BOUND TO CA2+ IN NANODISC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUTE CARRIER FAMILY 40 MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERROPORTIN-1,IRON-REGULATED TRANSPORTER 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 11F9 LIGHT-CHAIN; COMPND 8 CHAIN: C; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 11F9 HEAVY-CHAIN; COMPND 11 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC40A1, FPN1, IREG1, SLC11A3, MSTP079; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: MOUSE; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS SLC40, FPN, FERROPORTIN, IRON TRANSPORTER, CALCIUM, CA2+, HUMAN, KEYWDS 2 NANODISC, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.SHEN,A.S.WILBON,Y.PAN,M.ZHOU REVDAT 1 25-JAN-23 8DL6 0 JRNL AUTH J.SHEN,A.S.WILBON,M.ZHOU,Y.PAN JRNL TITL MECHANISM OF CA 2+ TRANSPORT BY FERROPORTIN. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 36648329 JRNL DOI 10.7554/ELIFE.82947 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 437959 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8DL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266884. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF HUMAN REMARK 245 FERROPORTIN/SLC40 BOUND TO CA2+ REMARK 245 IN NANODISC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 HIS A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 CYS A 13 REMARK 465 CYS A 14 REMARK 465 GLU A 241 REMARK 465 GLU A 242 REMARK 465 GLU A 243 REMARK 465 THR A 244 REMARK 465 GLU A 245 REMARK 465 LEU A 246 REMARK 465 LYS A 247 REMARK 465 GLN A 248 REMARK 465 LEU A 249 REMARK 465 ASN A 250 REMARK 465 LEU A 251 REMARK 465 HIS A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 THR A 255 REMARK 465 GLU A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 PRO A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 GLY A 262 REMARK 465 THR A 263 REMARK 465 HIS A 264 REMARK 465 LEU A 265 REMARK 465 MET A 266 REMARK 465 GLY A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 465 ASP A 270 REMARK 465 SER A 271 REMARK 465 ASN A 272 REMARK 465 ILE A 273 REMARK 465 HIS A 274 REMARK 465 GLU A 275 REMARK 465 LEU A 276 REMARK 465 GLU A 277 REMARK 465 HIS A 278 REMARK 465 GLU A 279 REMARK 465 GLN A 280 REMARK 465 GLU A 281 REMARK 465 PRO A 282 REMARK 465 THR A 283 REMARK 465 CYS A 284 REMARK 465 ALA A 285 REMARK 465 SER A 286 REMARK 465 GLN A 287 REMARK 465 MET A 288 REMARK 465 SER A 401 REMARK 465 VAL A 402 REMARK 465 SER A 403 REMARK 465 PRO A 404 REMARK 465 PHE A 405 REMARK 465 GLU A 406 REMARK 465 ASP A 407 REMARK 465 ILE A 408 REMARK 465 ARG A 409 REMARK 465 SER A 410 REMARK 465 ARG A 411 REMARK 465 PHE A 412 REMARK 465 ILE A 413 REMARK 465 GLN A 414 REMARK 465 GLY A 415 REMARK 465 GLU A 416 REMARK 465 SER A 417 REMARK 465 ILE A 418 REMARK 465 THR A 419 REMARK 465 PRO A 420 REMARK 465 THR A 421 REMARK 465 LYS A 422 REMARK 465 ILE A 423 REMARK 465 PRO A 424 REMARK 465 GLU A 425 REMARK 465 ILE A 426 REMARK 465 THR A 427 REMARK 465 THR A 428 REMARK 465 GLU A 429 REMARK 465 ILE A 430 REMARK 465 TYR A 431 REMARK 465 MET A 432 REMARK 465 SER A 433 REMARK 465 ASN A 434 REMARK 465 GLY A 435 REMARK 465 SER A 436 REMARK 465 ASN A 437 REMARK 465 SER A 438 REMARK 465 ALA A 439 REMARK 465 ASN A 440 REMARK 465 ILE A 441 REMARK 465 VAL A 442 REMARK 465 PRO A 443 REMARK 465 GLU A 444 REMARK 465 THR A 445 REMARK 465 SER A 446 REMARK 465 PRO A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 VAL A 450 REMARK 465 PRO A 451 REMARK 465 ASP A 556 REMARK 465 ALA A 557 REMARK 465 LYS A 558 REMARK 465 GLU A 559 REMARK 465 VAL A 560 REMARK 465 ARG A 561 REMARK 465 LYS A 562 REMARK 465 GLU A 563 REMARK 465 ASN A 564 REMARK 465 GLN A 565 REMARK 465 ALA A 566 REMARK 465 ASN A 567 REMARK 465 THR A 568 REMARK 465 SER A 569 REMARK 465 VAL A 570 REMARK 465 VAL A 571 REMARK 465 GLU A 572 REMARK 465 ASN A 573 REMARK 465 LEU A 574 REMARK 465 TYR A 575 REMARK 465 PHE A 576 REMARK 465 GLN A 577 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 CYS D 3 REMARK 465 SER D 4 REMARK 465 TRP D 5 REMARK 465 VAL D 6 REMARK 465 ILE D 7 REMARK 465 PHE D 8 REMARK 465 PHE D 9 REMARK 465 LEU D 10 REMARK 465 MET D 11 REMARK 465 ALA D 12 REMARK 465 VAL D 13 REMARK 465 VAL D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 VAL D 17 REMARK 465 ASN D 18 REMARK 465 SER D 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 470 PRO C 133 CG CD REMARK 470 THR C 134 OG1 CG2 REMARK 470 VAL C 135 CG1 CG2 REMARK 470 SER C 136 OG REMARK 470 ILE C 137 CG1 CG2 CD1 REMARK 470 PHE C 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO C 139 CG CD REMARK 470 PRO C 140 CG CD REMARK 470 SER C 141 OG REMARK 470 SER C 142 OG REMARK 470 GLU C 143 CG CD OE1 OE2 REMARK 470 GLN C 144 CG CD OE1 NE2 REMARK 470 LEU C 145 CG CD1 CD2 REMARK 470 THR C 146 OG1 CG2 REMARK 470 SER C 147 OG REMARK 470 SER C 151 OG REMARK 470 VAL C 152 CG1 CG2 REMARK 470 VAL C 153 CG1 CG2 REMARK 470 CYS C 154 SG REMARK 470 PHE C 155 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 156 CG CD1 CD2 REMARK 470 ASN C 157 CG OD1 ND2 REMARK 470 ASN C 158 CG OD1 ND2 REMARK 470 PHE C 159 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR C 160 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO C 161 CG CD REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 ASP C 163 CG OD1 OD2 REMARK 470 ILE C 164 CG1 CG2 CD1 REMARK 470 ASN C 165 CG OD1 ND2 REMARK 470 VAL C 166 CG1 CG2 REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 TRP C 168 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 168 CZ3 CH2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 ILE C 170 CG1 CG2 CD1 REMARK 470 ASP C 171 CG OD1 OD2 REMARK 470 SER C 173 OG REMARK 470 GLU C 174 CG CD OE1 OE2 REMARK 470 ARG C 175 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 176 CG CD OE1 NE2 REMARK 470 ASN C 177 CG OD1 ND2 REMARK 470 VAL C 179 CG1 CG2 REMARK 470 LEU C 180 CG CD1 CD2 REMARK 470 ASN C 181 CG OD1 ND2 REMARK 470 SER C 182 OG REMARK 470 TRP C 183 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 183 CZ3 CH2 REMARK 470 THR C 184 OG1 CG2 REMARK 470 ASP C 185 CG OD1 OD2 REMARK 470 GLN C 186 CG CD OE1 NE2 REMARK 470 ASP C 187 CG OD1 OD2 REMARK 470 SER C 188 OG REMARK 470 LYS C 189 CG CD CE NZ REMARK 470 ASP C 190 CG OD1 OD2 REMARK 470 SER C 191 OG REMARK 470 THR C 192 OG1 CG2 REMARK 470 TYR C 193 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER C 194 OG REMARK 470 MET C 195 CG SD CE REMARK 470 SER C 196 OG REMARK 470 SER C 197 OG REMARK 470 THR C 198 OG1 CG2 REMARK 470 LEU C 199 CG CD1 CD2 REMARK 470 THR C 200 OG1 CG2 REMARK 470 LEU C 201 CG CD1 CD2 REMARK 470 THR C 202 OG1 CG2 REMARK 470 LYS C 203 CG CD CE NZ REMARK 470 ASP C 204 CG OD1 OD2 REMARK 470 GLU C 205 CG CD OE1 OE2 REMARK 470 TYR C 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 207 CG CD OE1 OE2 REMARK 470 ARG C 208 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 209 CG ND1 CD2 CE1 NE2 REMARK 470 ASN C 210 CG OD1 ND2 REMARK 470 SER C 211 OG REMARK 470 TYR C 212 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR C 213 OG1 CG2 REMARK 470 CYS C 214 SG REMARK 470 GLU C 215 CG CD OE1 OE2 REMARK 470 THR C 217 OG1 CG2 REMARK 470 HIS C 218 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 219 CG CD CE NZ REMARK 470 THR C 220 OG1 CG2 REMARK 470 SER C 221 OG REMARK 470 THR C 222 OG1 CG2 REMARK 470 SER C 223 OG REMARK 470 PRO C 224 CG CD REMARK 470 ILE C 225 CG1 CG2 CD1 REMARK 470 VAL C 226 CG1 CG2 REMARK 470 LYS C 227 CG CD CE NZ REMARK 470 SER C 228 OG REMARK 470 PHE C 229 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 230 CG OD1 ND2 REMARK 470 ARG C 231 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 232 CG OD1 ND2 REMARK 470 GLU C 233 CG CD OE1 OE2 REMARK 470 LYS D 140 CB CG CD CE NZ REMARK 470 THR D 141 OG1 CG2 REMARK 470 THR D 142 OG1 CG2 REMARK 470 PRO D 144 CG CD REMARK 470 SER D 145 OG REMARK 470 VAL D 146 CG1 CG2 REMARK 470 TYR D 147 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO D 148 CG CD REMARK 470 LEU D 149 CG CD1 CD2 REMARK 470 PRO D 151 CG CD REMARK 470 VAL D 152 CG1 CG2 REMARK 470 CYS D 153 SG REMARK 470 ASP D 155 CG OD1 OD2 REMARK 470 THR D 156 OG1 CG2 REMARK 470 THR D 157 OG1 CG2 REMARK 470 SER D 159 OG REMARK 470 SER D 160 OG REMARK 470 VAL D 161 CG1 CG2 REMARK 470 THR D 162 OG1 CG2 REMARK 470 LEU D 163 CG CD1 CD2 REMARK 470 CYS D 165 SG REMARK 470 LEU D 166 CG CD1 CD2 REMARK 470 VAL D 167 CG1 CG2 REMARK 470 LYS D 168 CG CD CE NZ REMARK 470 TYR D 170 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE D 171 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO D 172 CB CG CD REMARK 470 GLU D 173 CG CD OE1 OE2 REMARK 470 PRO D 174 CG CD REMARK 470 VAL D 175 CG1 CG2 REMARK 470 THR D 176 OG1 CG2 REMARK 470 LEU D 177 CG CD1 CD2 REMARK 470 THR D 178 OG1 CG2 REMARK 470 TRP D 179 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 179 CZ3 CH2 REMARK 470 ASN D 180 CG OD1 ND2 REMARK 470 SER D 181 OG REMARK 470 SER D 183 OG REMARK 470 LEU D 184 CG CD1 CD2 REMARK 470 SER D 185 OG REMARK 470 SER D 186 OG REMARK 470 VAL D 188 CG1 CG2 REMARK 470 HIS D 189 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 190 OG1 CG2 REMARK 470 PHE D 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO D 192 CG CD REMARK 470 VAL D 194 CG1 CG2 REMARK 470 LEU D 195 CG CD1 CD2 REMARK 470 GLN D 196 CG CD OE1 NE2 REMARK 470 SER D 197 OG REMARK 470 LEU D 199 CG CD1 CD2 REMARK 470 TYR D 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR D 201 OG1 CG2 REMARK 470 LEU D 202 CG CD1 CD2 REMARK 470 SER D 203 OG REMARK 470 SER D 204 OG REMARK 470 SER D 205 OG REMARK 470 VAL D 206 CG1 CG2 REMARK 470 THR D 207 OG1 CG2 REMARK 470 VAL D 208 CG1 CG2 REMARK 470 THR D 209 OG1 CG2 REMARK 470 SER D 210 OG REMARK 470 SER D 211 OG REMARK 470 THR D 212 OG1 CG2 REMARK 470 TRP D 213 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP D 213 CZ2 CZ3 CH2 REMARK 470 PRO D 214 CB CG CD REMARK 470 SER D 215 OG REMARK 470 GLN D 216 CG CD OE1 NE2 REMARK 470 SER D 217 OG REMARK 470 ILE D 218 CG1 CG2 CD1 REMARK 470 THR D 219 OG1 CG2 REMARK 470 CYS D 220 SG REMARK 470 ASN D 221 CG OD1 ND2 REMARK 470 VAL D 222 CG1 CG2 REMARK 470 HIS D 224 CG ND1 CD2 CE1 NE2 REMARK 470 PRO D 225 CG CD REMARK 470 SER D 227 OG REMARK 470 SER D 228 OG REMARK 470 THR D 229 OG1 CG2 REMARK 470 LYS D 230 CG CD CE NZ REMARK 470 VAL D 231 CG1 CG2 REMARK 470 ASP D 232 CG OD1 OD2 REMARK 470 LYS D 233 CG CD CE NZ REMARK 470 LYS D 234 CG CD CE NZ REMARK 470 ILE D 235 CG1 CG2 CD1 REMARK 470 GLU D 236 CG CD OE1 OE2 REMARK 470 PRO D 237 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA C 131 CB TYR C 160 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 144 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO D 148 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 PRO D 151 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO D 174 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 PRO D 237 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 -80.17 -78.96 REMARK 500 SER A 23 -162.83 35.63 REMARK 500 TYR A 54 -62.63 -92.27 REMARK 500 LEU A 58 -71.70 67.62 REMARK 500 TYR A 124 -49.90 -137.95 REMARK 500 ALA A 188 -70.75 -76.29 REMARK 500 PRO A 189 -47.34 -29.35 REMARK 500 ASP A 325 -75.18 72.46 REMARK 500 SER A 338 -103.36 51.24 REMARK 500 SER A 396 82.75 73.23 REMARK 500 ASP A 399 163.72 74.95 REMARK 500 THR A 545 -79.21 -108.82 REMARK 500 ASN A 548 -59.25 72.45 REMARK 500 LYS A 549 38.22 -83.90 REMARK 500 PHE A 551 -144.67 -88.81 REMARK 500 ALA A 552 70.01 53.09 REMARK 500 ALA C 71 -7.44 70.92 REMARK 500 SER C 72 -37.90 -130.48 REMARK 500 SER C 87 149.64 -172.17 REMARK 500 GLU D 61 51.36 32.41 REMARK 500 ALA D 111 -169.44 -168.11 REMARK 500 THR D 142 -168.30 -161.30 REMARK 500 VAL D 161 -101.02 61.96 REMARK 500 PRO D 172 24.53 -149.75 REMARK 500 SER D 183 55.95 -96.95 REMARK 500 PRO D 214 -32.03 90.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 99 OE1 REMARK 620 2 ASN A 100 OD1 85.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27497 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN FERROPORTIN/SLC40 BOUND TO CA2+ IN REMARK 900 NANODISC DBREF 8DL6 A 1 571 UNP Q9NP59 S40A1_HUMAN 1 571 DBREF 8DL6 C 21 233 PDB 8DL6 8DL6 21 233 DBREF 8DL6 D 1 238 PDB 8DL6 8DL6 1 238 SEQADV 8DL6 GLU A 572 UNP Q9NP59 EXPRESSION TAG SEQADV 8DL6 ASN A 573 UNP Q9NP59 EXPRESSION TAG SEQADV 8DL6 LEU A 574 UNP Q9NP59 EXPRESSION TAG SEQADV 8DL6 TYR A 575 UNP Q9NP59 EXPRESSION TAG SEQADV 8DL6 PHE A 576 UNP Q9NP59 EXPRESSION TAG SEQADV 8DL6 GLN A 577 UNP Q9NP59 EXPRESSION TAG SEQRES 1 A 577 MET THR ARG ALA GLY ASP HIS ASN ARG GLN ARG GLY CYS SEQRES 2 A 577 CYS GLY SER LEU ALA ASP TYR LEU THR SER ALA LYS PHE SEQRES 3 A 577 LEU LEU TYR LEU GLY HIS SER LEU SER THR TRP GLY ASP SEQRES 4 A 577 ARG MET TRP HIS PHE ALA VAL SER VAL PHE LEU VAL GLU SEQRES 5 A 577 LEU TYR GLY ASN SER LEU LEU LEU THR ALA VAL TYR GLY SEQRES 6 A 577 LEU VAL VAL ALA GLY SER VAL LEU VAL LEU GLY ALA ILE SEQRES 7 A 577 ILE GLY ASP TRP VAL ASP LYS ASN ALA ARG LEU LYS VAL SEQRES 8 A 577 ALA GLN THR SER LEU VAL VAL GLN ASN VAL SER VAL ILE SEQRES 9 A 577 LEU CYS GLY ILE ILE LEU MET MET VAL PHE LEU HIS LYS SEQRES 10 A 577 HIS GLU LEU LEU THR MET TYR HIS GLY TRP VAL LEU THR SEQRES 11 A 577 SER CYS TYR ILE LEU ILE ILE THR ILE ALA ASN ILE ALA SEQRES 12 A 577 ASN LEU ALA SER THR ALA THR ALA ILE THR ILE GLN ARG SEQRES 13 A 577 ASP TRP ILE VAL VAL VAL ALA GLY GLU ASP ARG SER LYS SEQRES 14 A 577 LEU ALA ASN MET ASN ALA THR ILE ARG ARG ILE ASP GLN SEQRES 15 A 577 LEU THR ASN ILE LEU ALA PRO MET ALA VAL GLY GLN ILE SEQRES 16 A 577 MET THR PHE GLY SER PRO VAL ILE GLY CYS GLY PHE ILE SEQRES 17 A 577 SER GLY TRP ASN LEU VAL SER MET CYS VAL GLU TYR VAL SEQRES 18 A 577 LEU LEU TRP LYS VAL TYR GLN LYS THR PRO ALA LEU ALA SEQRES 19 A 577 VAL LYS ALA GLY LEU LYS GLU GLU GLU THR GLU LEU LYS SEQRES 20 A 577 GLN LEU ASN LEU HIS LYS ASP THR GLU PRO LYS PRO LEU SEQRES 21 A 577 GLU GLY THR HIS LEU MET GLY VAL LYS ASP SER ASN ILE SEQRES 22 A 577 HIS GLU LEU GLU HIS GLU GLN GLU PRO THR CYS ALA SER SEQRES 23 A 577 GLN MET ALA GLU PRO PHE ARG THR PHE ARG ASP GLY TRP SEQRES 24 A 577 VAL SER TYR TYR ASN GLN PRO VAL PHE LEU ALA GLY MET SEQRES 25 A 577 GLY LEU ALA PHE LEU TYR MET THR VAL LEU GLY PHE ASP SEQRES 26 A 577 CYS ILE THR THR GLY TYR ALA TYR THR GLN GLY LEU SER SEQRES 27 A 577 GLY SER ILE LEU SER ILE LEU MET GLY ALA SER ALA ILE SEQRES 28 A 577 THR GLY ILE MET GLY THR VAL ALA PHE THR TRP LEU ARG SEQRES 29 A 577 ARG LYS CYS GLY LEU VAL ARG THR GLY LEU ILE SER GLY SEQRES 30 A 577 LEU ALA GLN LEU SER CYS LEU ILE LEU CYS VAL ILE SER SEQRES 31 A 577 VAL PHE MET PRO GLY SER PRO LEU ASP LEU SER VAL SER SEQRES 32 A 577 PRO PHE GLU ASP ILE ARG SER ARG PHE ILE GLN GLY GLU SEQRES 33 A 577 SER ILE THR PRO THR LYS ILE PRO GLU ILE THR THR GLU SEQRES 34 A 577 ILE TYR MET SER ASN GLY SER ASN SER ALA ASN ILE VAL SEQRES 35 A 577 PRO GLU THR SER PRO GLU SER VAL PRO ILE ILE SER VAL SEQRES 36 A 577 SER LEU LEU PHE ALA GLY VAL ILE ALA ALA ARG ILE GLY SEQRES 37 A 577 LEU TRP SER PHE ASP LEU THR VAL THR GLN LEU LEU GLN SEQRES 38 A 577 GLU ASN VAL ILE GLU SER GLU ARG GLY ILE ILE ASN GLY SEQRES 39 A 577 VAL GLN ASN SER MET ASN TYR LEU LEU ASP LEU LEU HIS SEQRES 40 A 577 PHE ILE MET VAL ILE LEU ALA PRO ASN PRO GLU ALA PHE SEQRES 41 A 577 GLY LEU LEU VAL LEU ILE SER VAL SER PHE VAL ALA MET SEQRES 42 A 577 GLY HIS ILE MET TYR PHE ARG PHE ALA GLN ASN THR LEU SEQRES 43 A 577 GLY ASN LYS LEU PHE ALA CYS GLY PRO ASP ALA LYS GLU SEQRES 44 A 577 VAL ARG LYS GLU ASN GLN ALA ASN THR SER VAL VAL GLU SEQRES 45 A 577 ASN LEU TYR PHE GLN SEQRES 1 C 213 ASP ILE VAL MET THR GLN SER GLN LYS PHE MET SER THR SEQRES 2 C 213 SER VAL GLY ASP ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 C 213 GLN ASN VAL GLY THR ALA VAL ALA TRP TYR GLN LYS LYS SEQRES 4 C 213 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 C 213 ASN ARG TYR SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 C 213 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ASN MET SEQRES 7 C 213 GLN SER GLU ASP LEU ALA ASP TYR PHE CYS GLN GLN TYR SEQRES 8 C 213 GLY SER TYR PRO LEU THR PHE GLY SER GLY THR LYS LEU SEQRES 9 C 213 GLU ILE LYS GLU ALA GLU ALA ALA PRO THR VAL SER ILE SEQRES 10 C 213 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 C 213 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 C 213 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 C 213 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 C 213 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 C 213 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 C 213 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 C 213 PHE ASN ARG ASN GLU SEQRES 1 D 238 MET LYS CYS SER TRP VAL ILE PHE PHE LEU MET ALA VAL SEQRES 2 D 238 VAL THR GLY VAL ASN SER GLU VAL GLN LEU GLN GLN SER SEQRES 3 D 238 GLY ALA GLU LEU VAL ARG PRO GLY ALA LEU VAL LYS LEU SEQRES 4 D 238 SER CYS LYS ALA SER GLY PHE ASN ILE LYS ASP TYR TYR SEQRES 5 D 238 MET HIS TRP VAL LYS GLU ARG PRO GLU GLN GLY LEU GLU SEQRES 6 D 238 TRP ILE GLY TRP ILE ASP PRO GLU ASN GLY ASN THR ILE SEQRES 7 D 238 TYR ASP PRO LYS PHE GLN GLY LYS ALA SER ILE THR ALA SEQRES 8 D 238 ASP THR SER SER ASN THR ALA TYR LEU GLN LEU SER SER SEQRES 9 D 238 LEU THR SER GLU ASP THR ALA VAL TYR TYR CYS ALA ARG SEQRES 10 D 238 LYS ARG GLY TYR TYR GLY PRO TYR PHE ASP TYR TRP GLY SEQRES 11 D 238 GLN GLY THR THR LEU THR VAL SER SER LYS THR THR ALA SEQRES 12 D 238 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 13 D 238 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 14 D 238 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 15 D 238 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 16 D 238 GLN SER GLY LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 17 D 238 THR SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN SEQRES 18 D 238 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 19 D 238 ILE GLU PRO ALA HET CA A 601 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ FORMUL 5 HOH *(H2 O) HELIX 1 AA1 GLY A 15 SER A 23 1 9 HELIX 2 AA2 ALA A 24 GLY A 55 1 32 HELIX 3 AA3 LEU A 58 LYS A 85 1 28 HELIX 4 AA4 ALA A 87 HIS A 116 1 30 HELIX 5 AA5 HIS A 116 TYR A 124 1 9 HELIX 6 AA6 GLY A 126 ALA A 163 1 38 HELIX 7 AA7 ASP A 166 THR A 197 1 32 HELIX 8 AA8 SER A 200 GLN A 228 1 29 HELIX 9 AA9 LYS A 229 ALA A 234 5 6 HELIX 10 AB1 GLU A 290 GLN A 305 1 16 HELIX 11 AB2 VAL A 307 LEU A 317 1 11 HELIX 12 AB3 ASP A 325 GLN A 335 1 11 HELIX 13 AB4 SER A 340 GLY A 368 1 29 HELIX 14 AB5 GLY A 368 MET A 393 1 26 HELIX 15 AB6 ILE A 453 VAL A 484 1 32 HELIX 16 AB7 ILE A 485 ARG A 489 5 5 HELIX 17 AB8 GLY A 490 ALA A 514 1 25 HELIX 18 AB9 ASN A 516 ASN A 544 1 29 HELIX 19 AC1 SER C 141 SER C 147 1 7 HELIX 20 AC2 THR C 202 ARG C 208 1 7 HELIX 21 AC3 ASN D 47 TYR D 51 5 5 HELIX 22 AC4 PRO D 81 GLY D 85 5 5 HELIX 23 AC5 THR D 106 THR D 110 5 5 HELIX 24 AC6 TRP D 179 SER D 183 5 5 HELIX 25 AC7 THR D 209 TRP D 213 5 5 SHEET 1 AA1 4 MET C 24 THR C 25 0 SHEET 2 AA1 4 ARG C 38 ALA C 45 -1 O LYS C 44 N THR C 25 SHEET 3 AA1 4 ASP C 90 SER C 96 -1 O PHE C 91 N CYS C 43 SHEET 4 AA1 4 PHE C 82 SER C 87 -1 N SER C 85 O THR C 92 SHEET 1 AA2 6 PHE C 30 THR C 33 0 SHEET 2 AA2 6 THR C 122 ILE C 126 1 O GLU C 125 N MET C 31 SHEET 3 AA2 6 ASP C 105 GLN C 110 -1 N TYR C 106 O THR C 122 SHEET 4 AA2 6 VAL C 53 LYS C 58 -1 N LYS C 58 O ASP C 105 SHEET 5 AA2 6 LYS C 65 TYR C 69 -1 O ILE C 68 N TRP C 55 SHEET 6 AA2 6 ASN C 73 ARG C 74 -1 O ASN C 73 N TYR C 69 SHEET 1 AA3 4 ILE C 137 PHE C 138 0 SHEET 2 AA3 4 ALA C 150 PHE C 159 -1 O VAL C 153 N PHE C 138 SHEET 3 AA3 4 TYR C 193 LEU C 201 -1 O TYR C 193 N PHE C 159 SHEET 4 AA3 4 VAL C 179 TRP C 183 -1 N LEU C 180 O THR C 198 SHEET 1 AA4 3 ASN C 165 ILE C 170 0 SHEET 2 AA4 3 TYR C 212 THR C 217 -1 O THR C 217 N ASN C 165 SHEET 3 AA4 3 ILE C 225 SER C 228 -1 O ILE C 225 N ALA C 216 SHEET 1 AA5 4 GLN D 22 GLN D 25 0 SHEET 2 AA5 4 LEU D 36 SER D 44 -1 O LYS D 42 N GLN D 24 SHEET 3 AA5 4 THR D 97 SER D 103 -1 O ALA D 98 N CYS D 41 SHEET 4 AA5 4 ALA D 87 ASP D 92 -1 N SER D 88 O GLN D 101 SHEET 1 AA6 6 GLU D 29 VAL D 31 0 SHEET 2 AA6 6 THR D 133 VAL D 137 1 O THR D 134 N GLU D 29 SHEET 3 AA6 6 ALA D 111 LYS D 118 -1 N ALA D 111 O LEU D 135 SHEET 4 AA6 6 TYR D 52 GLU D 58 -1 N TYR D 52 O LYS D 118 SHEET 5 AA6 6 LEU D 64 ILE D 70 -1 O GLU D 65 N LYS D 57 SHEET 6 AA6 6 THR D 77 TYR D 79 -1 O ILE D 78 N TRP D 69 SHEET 1 AA7 4 SER D 145 VAL D 146 0 SHEET 2 AA7 4 LEU D 163 TYR D 170 -1 O LYS D 168 N SER D 145 SHEET 3 AA7 4 LEU D 199 VAL D 206 -1 O TYR D 200 N TYR D 170 SHEET 4 AA7 4 VAL D 188 THR D 190 -1 N HIS D 189 O SER D 205 SHEET 1 AA8 4 SER D 145 VAL D 146 0 SHEET 2 AA8 4 LEU D 163 TYR D 170 -1 O LYS D 168 N SER D 145 SHEET 3 AA8 4 LEU D 199 VAL D 206 -1 O TYR D 200 N TYR D 170 SHEET 4 AA8 4 VAL D 194 GLN D 196 -1 N GLN D 196 O LEU D 199 SHEET 1 AA9 2 THR D 219 VAL D 222 0 SHEET 2 AA9 2 VAL D 231 LYS D 234 -1 O VAL D 231 N VAL D 222 SSBOND 1 CYS A 367 CYS A 553 1555 1555 2.03 SSBOND 2 CYS C 43 CYS C 108 1555 1555 2.04 SSBOND 3 CYS D 41 CYS D 115 1555 1555 2.03 LINK OE1 GLN A 99 CA CA A 601 1555 1555 2.61 LINK OD1 ASN A 100 CA CA A 601 1555 1555 2.22 CISPEP 1 TYR C 114 PRO C 115 0 -0.70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000