HEADER ANTITOXIN 08-JUL-22 8DMR TITLE LEGIONELLA MACRODOMAIN EFFECTOR MAVL R370A IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAVL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, MACRODOMAIN, METAEFFECTOR, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.DAS REVDAT 2 25-OCT-23 8DMR 1 REMARK REVDAT 1 12-JUL-23 8DMR 0 JRNL AUTH Z.ZHANG,C.DAS JRNL TITL STRUCTURE OF ADP-RIBOSE-BOUND LEGIONELLA PNEUMOPHILA JRNL TITL 2 MACRODOMAIN EFFECTOR MAVL R370A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2100 - 4.5800 0.99 2685 132 0.1373 0.1495 REMARK 3 2 4.5800 - 3.6400 1.00 2617 155 0.1145 0.1313 REMARK 3 3 3.6400 - 3.1800 1.00 2645 117 0.1405 0.1823 REMARK 3 4 3.1800 - 2.8900 0.99 2604 126 0.1653 0.2064 REMARK 3 5 2.8900 - 2.6800 1.00 2646 121 0.1700 0.1852 REMARK 3 6 2.6800 - 2.5200 1.00 2584 166 0.1640 0.2129 REMARK 3 7 2.5200 - 2.4000 1.00 2609 113 0.1649 0.2213 REMARK 3 8 2.4000 - 2.2900 1.00 2580 154 0.1612 0.2094 REMARK 3 9 2.2900 - 2.2000 1.00 2606 138 0.1651 0.1988 REMARK 3 10 2.2000 - 2.1300 0.99 2553 132 0.1720 0.2364 REMARK 3 11 2.1300 - 2.0600 1.00 2596 135 0.1746 0.2007 REMARK 3 12 2.0600 - 2.0000 1.00 2599 112 0.1858 0.2251 REMARK 3 13 2.0000 - 1.9500 1.00 2572 159 0.2120 0.2370 REMARK 3 14 1.9500 - 1.9000 1.00 2589 149 0.2071 0.2201 REMARK 3 15 1.9000 - 1.8600 0.98 2558 122 0.2392 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.179 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2995 REMARK 3 ANGLE : 1.219 4075 REMARK 3 CHIRALITY : 0.062 444 REMARK 3 PLANARITY : 0.009 525 REMARK 3 DIHEDRAL : 15.154 434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9216 33.2312 -2.3079 REMARK 3 T TENSOR REMARK 3 T11: 0.2572 T22: 0.2802 REMARK 3 T33: 0.4570 T12: 0.0162 REMARK 3 T13: -0.0461 T23: -0.1307 REMARK 3 L TENSOR REMARK 3 L11: 2.7600 L22: 2.5651 REMARK 3 L33: 2.9947 L12: -1.3193 REMARK 3 L13: -0.4788 L23: 0.4218 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: -0.2619 S13: 0.2679 REMARK 3 S21: 0.0953 S22: 0.3312 S23: -0.6105 REMARK 3 S31: 0.2117 S32: 0.5203 S33: -0.3421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2078 26.4782 -6.8325 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.2114 REMARK 3 T33: 0.2365 T12: -0.0024 REMARK 3 T13: -0.0084 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.0969 L22: 2.9656 REMARK 3 L33: 2.4421 L12: -1.0278 REMARK 3 L13: -0.0676 L23: 0.7043 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.1389 S13: -0.0471 REMARK 3 S21: -0.1255 S22: 0.0758 S23: -0.2842 REMARK 3 S31: 0.2998 S32: 0.0828 S33: -0.1458 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1228 20.4514 11.5476 REMARK 3 T TENSOR REMARK 3 T11: 0.6316 T22: 0.2558 REMARK 3 T33: 0.3452 T12: 0.0684 REMARK 3 T13: -0.1087 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.5217 L22: 2.2687 REMARK 3 L33: 2.2678 L12: 0.4224 REMARK 3 L13: -0.2160 L23: 0.4544 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: -0.1964 S13: -0.3173 REMARK 3 S21: 0.7157 S22: 0.1584 S23: -0.2220 REMARK 3 S31: 1.0567 S32: 0.2398 S33: -0.2639 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3127 35.9068 4.9204 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.2431 REMARK 3 T33: 0.2058 T12: -0.0054 REMARK 3 T13: 0.0012 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.0484 L22: 4.8500 REMARK 3 L33: 2.7946 L12: -0.7592 REMARK 3 L13: 0.1176 L23: -0.3325 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0424 S13: 0.0643 REMARK 3 S21: 0.0869 S22: 0.0601 S23: -0.1032 REMARK 3 S31: 0.0700 S32: -0.1929 S33: -0.0407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6174 40.3461 10.1525 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2838 REMARK 3 T33: 0.2536 T12: 0.0246 REMARK 3 T13: 0.0148 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.7105 L22: 5.2977 REMARK 3 L33: 3.7323 L12: 0.3507 REMARK 3 L13: -0.0303 L23: -0.4791 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.1643 S13: 0.0658 REMARK 3 S21: 0.2975 S22: 0.0194 S23: -0.0216 REMARK 3 S31: -0.0200 S32: -0.2288 S33: -0.0494 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1196 37.0133 2.1764 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.3500 REMARK 3 T33: 0.3168 T12: -0.0271 REMARK 3 T13: 0.0002 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.4388 L22: 3.3262 REMARK 3 L33: 2.5636 L12: -1.0009 REMARK 3 L13: -0.5237 L23: 0.9586 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.1127 S13: 0.0184 REMARK 3 S21: 0.0764 S22: -0.1292 S23: 0.4890 REMARK 3 S31: 0.0102 S32: -0.6371 S33: 0.0720 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0657 26.6761 -16.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.4193 T22: 0.4008 REMARK 3 T33: 0.2963 T12: -0.0427 REMARK 3 T13: -0.0870 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 4.2380 L22: 3.5951 REMARK 3 L33: 3.5570 L12: -0.3208 REMARK 3 L13: -0.6521 L23: -0.3543 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.5827 S13: -0.1852 REMARK 3 S21: -0.5850 S22: -0.1300 S23: 0.3342 REMARK 3 S31: 0.2349 S32: -0.4503 S33: 0.0983 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5490 32.4865 -10.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.1598 REMARK 3 T33: 0.2555 T12: 0.0471 REMARK 3 T13: 0.0794 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 4.3318 L22: 3.2411 REMARK 3 L33: 4.5986 L12: -1.2752 REMARK 3 L13: -0.8709 L23: 0.9139 REMARK 3 S TENSOR REMARK 3 S11: 0.1571 S12: 0.3071 S13: 0.0432 REMARK 3 S21: -0.4499 S22: 0.3348 S23: -0.6974 REMARK 3 S31: 0.0283 S32: 0.3803 S33: -0.4486 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 42.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OMI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.02300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.51150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.53450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 ALA A 413 REMARK 465 LYS A 414 REMARK 465 VAL A 415 REMARK 465 GLU A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 THR A 419 REMARK 465 THR A 420 REMARK 465 ILE A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 LEU A 424 REMARK 465 VAL A 425 REMARK 465 ARG A 426 REMARK 465 SER A 427 REMARK 465 MET A 428 REMARK 465 PHE A 429 REMARK 465 SER A 430 REMARK 465 LEU A 431 REMARK 465 PHE A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 SER A 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 ASP A 369 CG OD1 OD2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 MET A 373 CG SD CE REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 368 CB REMARK 480 ASP A 369 CB REMARK 480 LYS A 371 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 108 -19.34 -140.39 REMARK 500 ASP A 116 -73.84 -124.17 REMARK 500 SER A 169 -127.92 -132.61 REMARK 500 TYR A 265 -62.73 74.09 REMARK 500 LEU A 295 54.81 -105.18 REMARK 500 ASN A 322 -94.15 18.27 REMARK 500 THR A 331 164.00 70.59 REMARK 500 ASP A 369 -130.17 70.33 REMARK 500 ALA A 370 -2.87 78.09 REMARK 500 SER A 374 58.68 -144.05 REMARK 500 ASN A 388 115.91 -168.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DMR A 42 435 UNP Q5ZSJ1 Q5ZSJ1_LEGPH 42 435 SEQADV 8DMR GLY A 37 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMR PRO A 38 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMR LEU A 39 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMR GLY A 40 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMR SER A 41 UNP Q5ZSJ1 EXPRESSION TAG SEQADV 8DMR ALA A 370 UNP Q5ZSJ1 ARG 370 ENGINEERED MUTATION SEQRES 1 A 399 GLY PRO LEU GLY SER ALA TYR GLN LEU LEU LEU SER LYS SEQRES 2 A 399 GLU THR LEU ASN LYS ILE LEU GLN TYR LYS GLN ASN LEU SEQRES 3 A 399 GLU LYS GLY LEU ALA THR PRO GLY LYS PHE PHE LEU GLU SEQRES 4 A 399 GLU LEU SER LYS GLN GLU LYS SER ILE SER GLU MET ASP SEQRES 5 A 399 ILE THR THR PHE THR GLN LEU LEU ILE GLN SER LYS LYS SEQRES 6 A 399 PRO GLN VAL PHE ALA GLU SER GLN VAL TYR HIS ASP GLY SEQRES 7 A 399 THR ASP TRP THR LEU GLU GLU GLU SER ILE LEU GLY ASP SEQRES 8 A 399 VAL SER VAL ASN MET PRO VAL THR MET TYR ASN ASP GLY SEQRES 9 A 399 GLY HIS GLY SER SER PHE LYS ASN HIS PRO LYS PRO ILE SEQRES 10 A 399 SER GLY TYR LEU ALA TYR VAL PRO GLY ALA LEU LEU ALA SEQRES 11 A 399 SER GLY SER GLY PRO THR SER ASP MET LYS GLU VAL LEU SEQRES 12 A 399 ASP ASN GLY LYS LEU ASN GLN ASP LYS LEU ASN ALA LEU SEQRES 13 A 399 TYR GLU ARG ARG LEU LEU PRO GLN LEU ILE HIS PHE ASN SEQRES 14 A 399 GLU LEU ALA ARG GLN ASN GLU LYS GLN ALA ALA ILE THR SEQRES 15 A 399 ILE PRO GLY ILE GLY THR GLY CYS PHE SER GLY ALA TYR SEQRES 16 A 399 TYR ASP VAL ILE LYS PRO TYR VAL ARG ASN ALA LEU ILE SEQRES 17 A 399 HIS ILE LEU GLU LYS HIS LYS ASP SER LEU PRO TYR ILE SEQRES 18 A 399 ASP ILE ILE HIS TYR ASP PRO TYR MET GLY ASP GLU PRO SEQRES 19 A 399 ALA GLU LYS LYS ILE GLY HIS MET SER PHE ARG VAL SER SEQRES 20 A 399 PRO SER GLY VAL VAL ARG GLY THR THR GLY GLN LEU ASP SEQRES 21 A 399 TYR PRO LEU GLY SER ASN PRO ASP THR HIS ILE LEU VAL SEQRES 22 A 399 SER ILE VAL ALA TRP ASP HIS PHE SER TRP PRO GLY ASN SEQRES 23 A 399 ASP TYR TRP GLY GLY ALA ARG GLN THR ASP ASP GLY VAL SEQRES 24 A 399 LYS ALA ALA SER THR ASP THR MET GLY GLN VAL THR GLY SEQRES 25 A 399 ALA THR GLY VAL TYR ASP LYS LYS TRP GLY ARG TYR MET SEQRES 26 A 399 PRO PRO GLU SER PHE THR LYS ASP ALA LYS GLY MET SER SEQRES 27 A 399 ASP TRP GLY ASP TYR VAL ARG GLU ASN GLY ILE VAL PHE SEQRES 28 A 399 ASN GLY PRO VAL LEU ALA LEU ASP LYS SER GLY LYS LEU SEQRES 29 A 399 ASP THR LEU GLU ASN VAL ALA SER ARG SER SER LYS ALA SEQRES 30 A 399 LYS VAL GLU THR THR THR THR ILE SER ASP LEU VAL ARG SEQRES 31 A 399 SER MET PHE SER LEU PHE SER HIS SER HET AR6 A 501 57 HET EDO A 502 10 HET EDO A 503 10 HET PEG A 504 17 HET NA A 505 1 HET SO4 A 506 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 FORMUL 6 NA NA 1+ FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *298(H2 O) HELIX 1 AA1 LYS A 49 LYS A 64 1 16 HELIX 2 AA2 GLY A 70 SER A 78 1 9 HELIX 3 AA3 ASP A 88 SER A 99 1 12 HELIX 4 AA4 THR A 118 GLY A 126 1 9 HELIX 5 AA5 THR A 172 VAL A 178 1 7 HELIX 6 AA6 ASN A 185 ASN A 211 1 27 HELIX 7 AA7 SER A 228 TYR A 232 5 5 HELIX 8 AA8 VAL A 234 LYS A 251 1 18 HELIX 9 AA9 ASP A 252 LEU A 254 5 3 HELIX 10 AB1 GLY A 321 GLY A 327 5 7 HELIX 11 AB2 GLN A 330 SER A 339 1 10 HELIX 12 AB3 ASP A 341 GLY A 348 1 8 HELIX 13 AB4 PRO A 363 LYS A 368 1 6 HELIX 14 AB5 ASP A 369 MET A 373 5 5 HELIX 15 AB6 ASP A 375 GLY A 384 1 10 HELIX 16 AB7 LEU A 403 ARG A 409 1 7 SHEET 1 AA110 ALA A 271 ILE A 275 0 SHEET 2 AA110 MET A 278 VAL A 282 -1 O VAL A 282 N ALA A 271 SHEET 3 AA110 ILE A 257 ASP A 263 1 N TYR A 262 O ARG A 281 SHEET 4 AA110 GLN A 214 PRO A 220 1 N ILE A 219 O ASP A 263 SHEET 5 AA110 HIS A 306 TRP A 314 1 O VAL A 309 N THR A 218 SHEET 6 AA110 ASN A 148 PRO A 161 1 N VAL A 160 O VAL A 312 SHEET 7 AA110 SER A 129 ASN A 138 -1 N MET A 136 O ILE A 153 SHEET 8 AA110 GLN A 44 SER A 48 -1 N GLN A 44 O ASN A 131 SHEET 9 AA110 VAL A 391 LEU A 394 1 O LEU A 392 N LEU A 45 SHEET 10 AA110 LEU A 400 THR A 402 -1 O ASP A 401 N ALA A 393 SHEET 1 AA2 2 LEU A 179 ASP A 180 0 SHEET 2 AA2 2 LYS A 183 LEU A 184 -1 O LYS A 183 N ASP A 180 SHEET 1 AA3 2 VAL A 352 ASP A 354 0 SHEET 2 AA3 2 ARG A 359 MET A 361 -1 O MET A 361 N VAL A 352 LINK NA NA A 505 O HOH A 696 1555 1555 3.07 CRYST1 95.557 95.557 54.046 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018503 0.00000