HEADER TOXIN/ANTITOXIN 11-JUL-22 8DND TITLE CRYSTAL STRUCTURE OF BOTHROPS PIRAJAI PIRATOXIN-I (PRTX-I) AND TITLE 2 SYNTHETIC INHIBITOR VARESPLADIB (LY315920) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG PIRATOXIN-1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,MYOTOXIN SIV-SP5,PIRATOXIN-I,PRTX-I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PIRAJAI; SOURCE 3 ORGANISM_TAXID: 113192; SOURCE 4 TISSUE: VENOM GLAND KEYWDS PRTX-I, VARESPLADIB, BOTHROPS PIRAJAI, PLA2-LIKE TOXIN, TOXIN, TOXIN- KEYWDS 2 ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,M.R.M.FONTES REVDAT 2 09-AUG-23 8DND 1 JRNL REVDAT 1 02-AUG-23 8DND 0 JRNL AUTH G.H.M.SALVADOR,E.K.R.PINTO,P.L.ORTOLANI,C.L.FORTES-DIAS, JRNL AUTH 2 W.L.G.CAVALCANTE,A.M.SOARES,B.LOMONTE,M.R.LEWIN,M.R.M.FONTES JRNL TITL STRUCTURAL BASIS OF THE MYOTOXIC INHIBITION OF THE BOTHROPS JRNL TITL 2 PIRAJAI PRTX-I BY THE SYNTHETIC VARESPLADIB. JRNL REF BIOCHIMIE V. 207 1 2023 JRNL REFN ISSN 0300-9084 JRNL PMID 36403756 JRNL DOI 10.1016/J.BIOCHI.2022.11.006 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.470 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.3170 - 3.6665 1.00 2555 148 0.1711 0.1944 REMARK 3 2 3.6665 - 2.9103 1.00 2443 125 0.1778 0.1909 REMARK 3 3 2.9103 - 2.5424 1.00 2402 154 0.2078 0.2198 REMARK 3 4 2.5424 - 2.3100 1.00 2376 151 0.2084 0.2588 REMARK 3 5 2.3100 - 2.1444 0.88 2096 120 0.2228 0.2686 REMARK 3 6 2.1444 - 2.0180 1.00 2355 125 0.2388 0.2746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2189 6.6474 -15.5947 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.2084 REMARK 3 T33: 0.2036 T12: -0.0088 REMARK 3 T13: 0.0118 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.1862 L22: 7.4772 REMARK 3 L33: 3.3677 L12: 0.3488 REMARK 3 L13: -0.3527 L23: 2.8694 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.0288 S13: 0.1761 REMARK 3 S21: 0.0122 S22: 0.0278 S23: 0.6308 REMARK 3 S31: -0.1260 S32: -0.2184 S33: 0.0560 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0116 -1.6071 -12.8334 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.1964 REMARK 3 T33: 0.2036 T12: 0.0057 REMARK 3 T13: 0.0209 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.6859 L22: 3.2998 REMARK 3 L33: 8.0390 L12: -0.3488 REMARK 3 L13: 2.9805 L23: 1.9530 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: -0.0895 S13: -0.5468 REMARK 3 S21: 0.7150 S22: 0.3284 S23: 0.0058 REMARK 3 S31: 0.3103 S32: 0.0638 S33: -0.3862 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3244 4.1519 -16.2247 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.4204 REMARK 3 T33: 0.4144 T12: 0.0083 REMARK 3 T13: -0.0493 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 3.2536 L22: 5.1917 REMARK 3 L33: 2.8506 L12: 0.6601 REMARK 3 L13: 0.1704 L23: 1.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.1533 S12: -0.4556 S13: 0.4732 REMARK 3 S21: 0.4223 S22: 0.0431 S23: -0.9709 REMARK 3 S31: 0.0743 S32: 0.8987 S33: -0.1865 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3613 9.7187 -21.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.2159 REMARK 3 T33: 0.2704 T12: -0.0248 REMARK 3 T13: 0.0036 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.1606 L22: 8.0741 REMARK 3 L33: 2.6803 L12: -2.3174 REMARK 3 L13: -0.1628 L23: -0.5227 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: 0.0708 S13: 0.2975 REMARK 3 S21: 0.0583 S22: 0.1483 S23: -0.6671 REMARK 3 S31: -0.1442 S32: 0.4175 S33: -0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3525 14.0450 -18.4862 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.1977 REMARK 3 T33: 0.3056 T12: 0.0249 REMARK 3 T13: 0.0250 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.4357 L22: 5.2834 REMARK 3 L33: 1.4068 L12: 2.1941 REMARK 3 L13: -1.0806 L23: -0.8383 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.1581 S13: 0.5625 REMARK 3 S21: 0.0533 S22: -0.0266 S23: 0.7589 REMARK 3 S31: -0.4188 S32: -0.1622 S33: 0.0113 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2293 19.8173 -22.2658 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.2684 REMARK 3 T33: 0.5719 T12: 0.0351 REMARK 3 T13: 0.0121 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.6361 L22: 4.5424 REMARK 3 L33: 1.2283 L12: -1.3724 REMARK 3 L13: -0.5038 L23: -0.0579 REMARK 3 S TENSOR REMARK 3 S11: 0.2031 S12: -0.4808 S13: 1.3402 REMARK 3 S21: -0.0197 S22: -0.3635 S23: 0.2953 REMARK 3 S31: -0.3591 S32: 0.1176 S33: 0.2945 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4764 11.5593 -23.0764 REMARK 3 T TENSOR REMARK 3 T11: 0.1631 T22: 0.1587 REMARK 3 T33: 0.2148 T12: -0.0154 REMARK 3 T13: 0.0277 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.5253 L22: 2.6356 REMARK 3 L33: 1.2827 L12: -0.2992 REMARK 3 L13: -0.2084 L23: -0.0470 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0903 S13: 0.2178 REMARK 3 S21: -0.2636 S22: -0.1093 S23: -0.1693 REMARK 3 S31: -0.1848 S32: -0.1055 S33: -0.0158 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3518 -6.1610 -19.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.2088 REMARK 3 T33: 0.1862 T12: 0.0129 REMARK 3 T13: -0.0242 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 7.0340 L22: 3.9240 REMARK 3 L33: 5.8655 L12: -0.4989 REMARK 3 L13: 1.4979 L23: -0.5952 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.3417 S13: -0.1710 REMARK 3 S21: 0.4082 S22: -0.1780 S23: -0.4071 REMARK 3 S31: 0.6707 S32: 0.4258 S33: 0.1548 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0000 -1.1073 -10.4839 REMARK 3 T TENSOR REMARK 3 T11: 0.5994 T22: 0.7901 REMARK 3 T33: 0.5206 T12: 0.2527 REMARK 3 T13: -0.0737 T23: 0.1368 REMARK 3 L TENSOR REMARK 3 L11: 2.0756 L22: 7.5036 REMARK 3 L33: 1.1480 L12: 0.3122 REMARK 3 L13: -0.5496 L23: 2.6515 REMARK 3 S TENSOR REMARK 3 S11: -0.2036 S12: -0.4690 S13: 0.4274 REMARK 3 S21: 0.5097 S22: 0.4169 S23: -1.0683 REMARK 3 S31: 0.1002 S32: 0.0826 S33: 0.0030 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7004 10.6648 -21.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.5323 REMARK 3 T33: 0.6569 T12: -0.0423 REMARK 3 T13: -0.0735 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 3.5948 L22: 2.0594 REMARK 3 L33: 3.0853 L12: -0.3330 REMARK 3 L13: -0.1599 L23: -0.1238 REMARK 3 S TENSOR REMARK 3 S11: 0.1043 S12: -0.1808 S13: -0.2897 REMARK 3 S21: 0.0452 S22: -0.2253 S23: -0.5873 REMARK 3 S31: -0.3891 S32: 0.8078 S33: 0.2525 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2550 7.3636 2.8167 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2076 REMARK 3 T33: 0.1894 T12: -0.0073 REMARK 3 T13: -0.0266 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.1712 L22: 2.3653 REMARK 3 L33: 2.4297 L12: 0.4498 REMARK 3 L13: 0.1891 L23: 0.5084 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: 0.2211 S13: 0.0774 REMARK 3 S21: -0.1529 S22: -0.0309 S23: -0.0201 REMARK 3 S31: -0.1474 S32: 0.1670 S33: 0.1008 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4716 20.3405 -1.8621 REMARK 3 T TENSOR REMARK 3 T11: 0.6804 T22: 0.4521 REMARK 3 T33: 0.4772 T12: -0.2018 REMARK 3 T13: -0.2285 T23: 0.1935 REMARK 3 L TENSOR REMARK 3 L11: 3.7438 L22: 1.5693 REMARK 3 L33: 3.2452 L12: 0.2109 REMARK 3 L13: 1.0260 L23: -1.1389 REMARK 3 S TENSOR REMARK 3 S11: -0.7003 S12: 0.7114 S13: 0.6064 REMARK 3 S21: -0.2188 S22: 0.2069 S23: -0.0159 REMARK 3 S31: -0.9712 S32: 0.3477 S33: 0.1418 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0685 10.8991 7.2616 REMARK 3 T TENSOR REMARK 3 T11: 0.2042 T22: 0.2769 REMARK 3 T33: 0.1960 T12: -0.0283 REMARK 3 T13: -0.0217 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.5649 L22: 5.1643 REMARK 3 L33: 1.9761 L12: 1.9940 REMARK 3 L13: -0.2630 L23: -0.7383 REMARK 3 S TENSOR REMARK 3 S11: -0.3409 S12: 0.1842 S13: 0.0206 REMARK 3 S21: -0.1363 S22: 0.2456 S23: -0.3806 REMARK 3 S31: -0.1263 S32: 0.5036 S33: 0.1045 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8448 4.0644 2.7232 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1657 REMARK 3 T33: 0.1258 T12: -0.0123 REMARK 3 T13: 0.0110 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.9276 L22: 1.0931 REMARK 3 L33: 2.9963 L12: 1.3813 REMARK 3 L13: 0.4847 L23: -0.9333 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.1361 S13: 0.1008 REMARK 3 S21: -0.2497 S22: -0.0746 S23: 0.4029 REMARK 3 S31: 0.1119 S32: -0.2030 S33: 0.1088 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000266994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.018 REMARK 200 RESOLUTION RANGE LOW (A) : 50.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: 2Q2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V PEG 4000, 0.1 M TRIS HCL PH REMARK 280 8.5 AND 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.87400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.87400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 323 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 70 CB CG CD CE NZ REMARK 470 LYS B 78 NZ REMARK 470 LEU B 116 CG CD1 CD2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LEU A 116 CG CD1 CD2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 7 NZ REMARK 480 TYR B 119 CG OH REMARK 480 PHE B 125 CZ REMARK 480 ASP B 132 OD1 REMARK 480 ARG A 43 CZ REMARK 480 ASN A 67 CG REMARK 480 ARG A 72 CZ REMARK 480 ASP A 132 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 306 O HOH B 357 2.07 REMARK 500 O HOH B 355 O HOH B 365 2.12 REMARK 500 NZ LYS A 127 O HOH A 301 2.13 REMARK 500 N ASP A 131 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 32 14.64 99.88 REMARK 500 ALA A 24 29.06 -149.29 REMARK 500 LEU A 32 40.26 73.32 REMARK 500 LEU A 58 80.43 -65.80 REMARK 500 CYS A 61 -155.71 -159.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 382 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 383 DISTANCE = 6.24 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q2J RELATED DB: PDB REMARK 900 SAME PROTEIN IN NATIVE FORM REMARK 900 RELATED ID: 6PWH RELATED DB: PDB REMARK 900 HOMOLOGUE PROTEIN WITH SAME INHIBITOR REMARK 900 RELATED ID: 7LYE RELATED DB: PDB REMARK 900 HOMOLOGUE PROTEIN WITH SAME INHIBITOR DBREF 8DND B 1 133 UNP P58399 PA2H1_BOTPI 1 121 DBREF 8DND A 1 133 UNP P58399 PA2H1_BOTPI 1 121 SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LEU TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP ASP CYS SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LEU TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP ASP CYS HET VRD B 201 28 HET VRD B 202 28 HET SO4 B 203 5 HET VRD A 201 28 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM VRD ({3-[AMINO(OXO)ACETYL]-1-BENZYL-2-ETHYL-1H-INDOL-4- HETNAM 2 VRD YL}OXY)ACETIC ACID HETNAM SO4 SULFATE ION HETSYN VRD VARESPLADIB FORMUL 3 VRD 3(C21 H20 N2 O5) FORMUL 5 SO4 4(O4 S 2-) FORMUL 10 HOH *165(H2 O) HELIX 1 AA1 SER B 1 GLY B 15 1 14 HELIX 2 AA2 ASN B 17 GLY B 23 1 7 HELIX 3 AA3 ASP B 39 LYS B 57 1 16 HELIX 4 AA4 ASN B 88 ASN B 109 1 21 HELIX 5 AA5 LEU B 110 TYR B 113 5 4 HELIX 6 AA6 ASN B 114 ARG B 118 5 5 HELIX 7 AA7 LEU B 121 CYS B 126 5 5 HELIX 8 AA8 LEU A 2 GLY A 15 1 13 HELIX 9 AA9 ASN A 17 GLY A 23 1 7 HELIX 10 AB1 ASP A 39 LEU A 58 1 17 HELIX 11 AB2 ASN A 88 ASN A 109 1 21 HELIX 12 AB3 LEU A 110 TYR A 113 5 4 HELIX 13 AB4 ASN A 114 ARG A 118 5 5 HELIX 14 AB5 LEU A 121 CYS A 126 5 5 SHEET 1 AA1 2 SER B 76 TRP B 77 0 SHEET 2 AA1 2 ILE B 82 VAL B 83 -1 O VAL B 83 N SER B 76 SHEET 1 AA2 2 TYR A 75 LYS A 78 0 SHEET 2 AA2 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SSBOND 1 CYS B 27 CYS B 126 1555 1555 2.03 SSBOND 2 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 3 CYS B 44 CYS B 105 1555 1555 2.03 SSBOND 4 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 5 CYS B 51 CYS B 98 1555 1555 2.03 SSBOND 6 CYS B 61 CYS B 91 1555 1555 2.03 SSBOND 7 CYS B 84 CYS B 96 1555 1555 2.03 SSBOND 8 CYS A 27 CYS A 126 1555 1555 2.03 SSBOND 9 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 10 CYS A 44 CYS A 105 1555 1555 2.03 SSBOND 11 CYS A 50 CYS A 133 1555 1555 2.03 SSBOND 12 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 13 CYS A 61 CYS A 91 1555 1555 2.02 SSBOND 14 CYS A 84 CYS A 96 1555 1555 2.03 CRYST1 69.748 72.660 44.280 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022584 0.00000