HEADER TRANSCRIPTION 11-JUL-22 8DNQ TITLE BRD2-BD1 IN COMPLEX WITH CYCLIC PEPTIDE 2.2B COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BD1 (UNP RESIDUES 65-194); COMPND 5 SYNONYM: BRD2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIC PEPTIDE 2.2B; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS CYCLIC PEPTIDE, BROMODOMAIN, BRD2, BET, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.PATEL,C.FRANCK,J.P.MACKAY REVDAT 4 06-DEC-23 8DNQ 1 JRNL REVDAT 3 15-NOV-23 8DNQ 1 REMARK REVDAT 2 25-OCT-23 8DNQ 1 REMARK REVDAT 1 19-JUL-23 8DNQ 0 JRNL AUTH C.FRANCK,K.PATEL,L.J.WALPORT,M.CHRISTIE,A.NORMAN, JRNL AUTH 2 T.PASSIOURA,H.SUGA,R.J.PAYNE,J.P.MACKAY JRNL TITL DISCOVERY AND CHARACTERIZATION OF CYCLIC PEPTIDES SELECTIVE JRNL TITL 2 FOR THE C-TERMINAL BROMODOMAINS OF BET FAMILY PROTEINS. JRNL REF STRUCTURE V. 31 912 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37269828 JRNL DOI 10.1016/J.STR.2023.05.009 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3700 - 4.0900 0.99 2666 131 0.1950 0.2473 REMARK 3 2 4.0900 - 3.2400 0.96 2490 155 0.1791 0.2322 REMARK 3 3 3.2400 - 2.8300 1.00 2613 135 0.1963 0.2230 REMARK 3 4 2.8300 - 2.5700 0.98 2557 135 0.2048 0.2414 REMARK 3 5 2.5700 - 2.3900 1.00 2609 128 0.2011 0.2486 REMARK 3 6 2.3900 - 2.2500 0.98 2559 118 0.2124 0.2793 REMARK 3 7 2.2500 - 2.1400 0.97 2494 142 0.2102 0.2649 REMARK 3 8 2.1400 - 2.0400 0.96 2468 155 0.2372 0.3172 REMARK 3 9 2.0400 - 1.9600 1.00 2560 139 0.2324 0.3242 REMARK 3 10 1.9600 - 1.9000 0.96 2452 145 0.2810 0.3446 REMARK 3 11 1.9000 - 1.8400 0.98 2505 144 0.3065 0.3509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2361 REMARK 3 ANGLE : 0.827 3195 REMARK 3 CHIRALITY : 0.045 323 REMARK 3 PLANARITY : 0.005 397 REMARK 3 DIHEDRAL : 19.337 323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0203 -13.7735 -1.7212 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.1409 REMARK 3 T33: 0.1189 T12: 0.0204 REMARK 3 T13: -0.0361 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.8805 L22: 2.0331 REMARK 3 L33: 3.5605 L12: 0.1484 REMARK 3 L13: -1.2873 L23: 0.3654 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.1727 S13: 0.2753 REMARK 3 S21: 0.3526 S22: 0.0058 S23: -0.1063 REMARK 3 S31: -0.1038 S32: -0.1432 S33: 0.0246 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4670 -19.5192 -15.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.2142 REMARK 3 T33: 0.2664 T12: -0.0184 REMARK 3 T13: 0.0175 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 5.4805 L22: 3.5376 REMARK 3 L33: 3.9749 L12: 2.6158 REMARK 3 L13: 2.2640 L23: 3.6204 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0459 S13: -0.0211 REMARK 3 S21: -0.1119 S22: 0.0292 S23: -0.7423 REMARK 3 S31: -0.3096 S32: 0.6392 S33: -0.0101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7422 -14.9564 -25.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.1164 REMARK 3 T33: 0.1957 T12: -0.0355 REMARK 3 T13: 0.0095 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.2111 L22: 0.6877 REMARK 3 L33: 1.9798 L12: -1.0848 REMARK 3 L13: 0.4881 L23: -0.7718 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.1531 S13: 0.2328 REMARK 3 S21: -0.1682 S22: -0.0084 S23: -0.1913 REMARK 3 S31: 0.1686 S32: -0.0008 S33: 0.0579 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6165 -14.0829 -16.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1300 REMARK 3 T33: 0.1477 T12: 0.0576 REMARK 3 T13: -0.0308 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.7891 L22: 1.9294 REMARK 3 L33: 4.5207 L12: 0.4446 REMARK 3 L13: 0.5327 L23: 1.4573 REMARK 3 S TENSOR REMARK 3 S11: -0.1113 S12: -0.0514 S13: 0.0644 REMARK 3 S21: -0.1466 S22: -0.0511 S23: 0.1038 REMARK 3 S31: -0.5070 S32: -0.3906 S33: 0.1867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0529 -20.1729 -13.2846 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1348 REMARK 3 T33: 0.1393 T12: -0.0041 REMARK 3 T13: -0.0083 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.5832 L22: 2.0334 REMARK 3 L33: 3.2795 L12: -0.0366 REMARK 3 L13: -0.1037 L23: 1.3097 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: -0.0279 S13: -0.0024 REMARK 3 S21: -0.0224 S22: -0.1113 S23: 0.0568 REMARK 3 S31: -0.0259 S32: -0.4454 S33: 0.0265 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9937 -25.8903 -11.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.0998 REMARK 3 T33: 0.1065 T12: 0.0180 REMARK 3 T13: -0.0146 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.7762 L22: 0.8521 REMARK 3 L33: 9.0148 L12: -0.1859 REMARK 3 L13: -0.8760 L23: 0.3833 REMARK 3 S TENSOR REMARK 3 S11: -0.1886 S12: -0.1192 S13: -0.0313 REMARK 3 S21: 0.2096 S22: -0.0065 S23: -0.1110 REMARK 3 S31: 0.2702 S32: 0.4733 S33: 0.2069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2349 -17.8494 7.2479 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.2788 REMARK 3 T33: 0.1676 T12: -0.0359 REMARK 3 T13: 0.0141 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 6.4416 L22: 3.6242 REMARK 3 L33: 3.5729 L12: -4.7296 REMARK 3 L13: -1.1064 L23: 1.5758 REMARK 3 S TENSOR REMARK 3 S11: -0.2357 S12: -0.4686 S13: -0.0168 REMARK 3 S21: 0.4082 S22: 0.2289 S23: 0.0417 REMARK 3 S31: 0.3498 S32: -0.1952 S33: -0.0879 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7536 4.1231 -30.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.1158 REMARK 3 T33: 0.1581 T12: 0.0031 REMARK 3 T13: 0.0030 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.6072 L22: 1.3531 REMARK 3 L33: 4.5720 L12: -0.6684 REMARK 3 L13: -0.1073 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: 0.0175 S13: -0.0089 REMARK 3 S21: -0.0369 S22: 0.0271 S23: -0.0636 REMARK 3 S31: 0.2563 S32: 0.1359 S33: -0.0885 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3501 5.4439 -7.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.2045 REMARK 3 T33: 0.1358 T12: 0.0279 REMARK 3 T13: 0.0659 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 7.1562 L22: 5.4757 REMARK 3 L33: 7.2930 L12: -1.1684 REMARK 3 L13: 5.5904 L23: -3.7790 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: -0.5844 S13: 0.1730 REMARK 3 S21: 0.7794 S22: 0.1146 S23: -0.0753 REMARK 3 S31: 0.0410 S32: -0.7646 S33: 0.0294 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8876 6.0811 -26.8056 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1459 REMARK 3 T33: 0.1457 T12: -0.0220 REMARK 3 T13: 0.0040 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3756 L22: 1.4738 REMARK 3 L33: 2.3629 L12: -0.0261 REMARK 3 L13: 0.0792 L23: 0.8748 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.0239 S13: -0.0236 REMARK 3 S21: -0.0089 S22: -0.0733 S23: 0.0775 REMARK 3 S31: 0.1399 S32: -0.2644 S33: 0.0549 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2693 19.1383 -12.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.0690 REMARK 3 T33: 0.0792 T12: 0.0610 REMARK 3 T13: 0.0486 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 2.2879 L22: 9.2566 REMARK 3 L33: 2.5967 L12: 2.3056 REMARK 3 L13: 2.3440 L23: 1.4393 REMARK 3 S TENSOR REMARK 3 S11: 0.0790 S12: -0.2080 S13: 0.1785 REMARK 3 S21: 0.2807 S22: 0.0438 S23: 0.2707 REMARK 3 S31: 0.0142 S32: -0.1776 S33: 0.0260 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8845 15.4231 -26.9531 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.0967 REMARK 3 T33: 0.1114 T12: -0.0185 REMARK 3 T13: 0.0296 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4367 L22: 0.9001 REMARK 3 L33: 3.0882 L12: 0.0856 REMARK 3 L13: -0.2859 L23: 0.9530 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: 0.0075 S13: 0.0179 REMARK 3 S21: -0.2641 S22: -0.0932 S23: -0.0455 REMARK 3 S31: -0.7042 S32: 0.5657 S33: 0.1366 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2382 7.3007 -46.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.2286 REMARK 3 T33: 0.1554 T12: -0.0055 REMARK 3 T13: 0.0379 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.8521 L22: 0.8973 REMARK 3 L33: 2.8179 L12: 1.2759 REMARK 3 L13: 1.3195 L23: -0.7317 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: 0.5310 S13: -0.0218 REMARK 3 S21: -0.3376 S22: 0.1372 S23: -0.0292 REMARK 3 S31: 0.0256 S32: 0.2634 S33: -0.2015 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6295 -19.0223 -28.1843 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.1504 REMARK 3 T33: 0.1118 T12: -0.0033 REMARK 3 T13: 0.0154 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.6801 L22: 3.9037 REMARK 3 L33: 4.1873 L12: 0.8732 REMARK 3 L13: 0.3006 L23: 0.1186 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.1253 S13: 0.3156 REMARK 3 S21: 0.3145 S22: 0.0300 S23: -0.0337 REMARK 3 S31: -0.4746 S32: 0.2170 S33: -0.0034 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4848 8.6009 -10.1984 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.1664 REMARK 3 T33: 0.1267 T12: -0.0042 REMARK 3 T13: 0.0022 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 5.4918 L22: 2.7020 REMARK 3 L33: 4.3553 L12: -0.8536 REMARK 3 L13: -0.0589 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.0771 S13: -0.2319 REMARK 3 S21: 0.0456 S22: -0.0573 S23: -0.0480 REMARK 3 S31: 0.6147 S32: 0.3688 S33: 0.0906 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000266996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : 0.9537 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 44.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ONI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIMETHYLAMINE N-OXIDE REMARK 280 DIHYDRATE, 0.1 M TRIS, PH 8.5, 20% W/V PEG2000 MME, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.18500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 LEU A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 GLU A 65 REMARK 465 VAL A 66 REMARK 465 SER A 67 REMARK 465 ASN A 68 REMARK 465 PRO A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 VAL A 188 REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 GLY B 60 REMARK 465 PRO B 61 REMARK 465 LEU B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 GLU B 65 REMARK 465 VAL B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 PRO B 69 REMARK 465 LYS B 70 REMARK 465 LYS B 71 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 84 CE NZ REMARK 480 LYS A 88 CD CE NZ REMARK 480 LYS A 92 CG CD CE NZ REMARK 480 ARG A 128 NE CZ NH1 NH2 REMARK 480 GLN A 143 CD OE1 NE2 REMARK 480 LYS A 157 CD CE NZ REMARK 480 GLN A 182 CG CD OE1 NE2 REMARK 480 LYS B 84 CE NZ REMARK 480 LYS B 88 CD CE NZ REMARK 480 LYS B 92 CD CE NZ REMARK 480 LYS B 115 CG CD CE NZ REMARK 480 LYS B 118 CD CE NZ REMARK 480 GLN B 119 CG CD OE1 NE2 REMARK 480 ARG B 128 NE CZ NH1 NH2 REMARK 480 GLN B 182 CD OE1 NE2 REMARK 480 GLU B 183 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH3 ACE D 0 SG CYS D 15 1.54 REMARK 500 NZ LYS A 157 O HOH A 301 1.91 REMARK 500 O HOH A 316 O HOH A 385 2.15 REMARK 500 O HOH D 104 O HOH D 112 2.18 REMARK 500 O HOH A 364 O HOH A 366 2.18 REMARK 500 OE1 GLN B 182 O HOH B 301 2.19 REMARK 500 O HOH B 319 O HOH B 365 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 376 O HOH B 347 1545 2.19 REMARK 500 O HOH A 369 O HOH D 106 2545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 110 75.12 -117.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DNQ A 65 194 UNP U3KQA6 U3KQA6_HUMAN 65 194 DBREF 8DNQ B 65 194 UNP U3KQA6 U3KQA6_HUMAN 65 194 DBREF 8DNQ C 0 16 PDB 8DNQ 8DNQ 0 16 DBREF 8DNQ D 0 16 PDB 8DNQ 8DNQ 0 16 SEQADV 8DNQ GLY A 60 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ PRO A 61 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ LEU A 62 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ GLY A 63 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ SER A 64 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ GLY B 60 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ PRO B 61 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ LEU B 62 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ GLY B 63 UNP U3KQA6 EXPRESSION TAG SEQADV 8DNQ SER B 64 UNP U3KQA6 EXPRESSION TAG SEQRES 1 A 135 GLY PRO LEU GLY SER GLU VAL SER ASN PRO LYS LYS PRO SEQRES 2 A 135 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 3 A 135 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 4 A 135 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 5 A 135 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 6 A 135 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 7 A 135 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 8 A 135 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 9 A 135 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 10 A 135 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 11 A 135 THR ILE PRO LYS ASN SEQRES 1 B 135 GLY PRO LEU GLY SER GLU VAL SER ASN PRO LYS LYS PRO SEQRES 2 B 135 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 3 B 135 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 4 B 135 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 5 B 135 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 6 B 135 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 7 B 135 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 8 B 135 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 9 B 135 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 10 B 135 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 11 B 135 THR ILE PRO LYS ASN SEQRES 1 C 17 ACE TRP TYR SER ALY LYS TYR ALA ALY TRP TRP THR VAL SEQRES 2 C 17 TYR PRO CYS NH2 SEQRES 1 D 17 ACE TRP TYR SER ALY LYS TYR ALA ALY TRP TRP THR VAL SEQRES 2 D 17 TYR PRO CYS NH2 HET ACE C 0 3 HET ALY C 4 12 HET ALY C 8 12 HET NH2 C 16 1 HET ACE D 0 3 HET ALY D 4 12 HET ALY D 8 12 HET NH2 D 16 1 HET GOL A 201 6 HET GOL A 202 6 HET GOL B 201 6 HET GOL B 202 6 HET GOL C 101 6 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 3 NH2 2(H2 N) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *196(H2 O) HELIX 1 AA1 THR A 76 VAL A 85 1 10 HELIX 2 AA2 VAL A 85 LYS A 92 1 8 HELIX 3 AA3 ALA A 96 ARG A 100 5 5 HELIX 4 AA4 ASP A 104 GLY A 109 1 6 HELIX 5 AA5 ASP A 112 ILE A 117 1 6 HELIX 6 AA6 ASP A 122 ASN A 132 1 11 HELIX 7 AA7 ALA A 137 ASN A 156 1 20 HELIX 8 AA8 ASP A 160 ALA A 178 1 19 HELIX 9 AA9 THR B 76 VAL B 85 1 10 HELIX 10 AB1 VAL B 85 LYS B 92 1 8 HELIX 11 AB2 ALA B 96 ARG B 100 5 5 HELIX 12 AB3 ASP B 104 GLY B 109 1 6 HELIX 13 AB4 ASP B 112 ILE B 117 1 6 HELIX 14 AB5 ASP B 122 ASN B 132 1 11 HELIX 15 AB6 ALA B 137 ASN B 156 1 20 HELIX 16 AB7 ASP B 160 ALA B 178 1 19 HELIX 17 AB8 TYR C 6 TRP C 10 5 5 HELIX 18 AB9 TYR D 6 TRP D 10 5 5 LINK C ACE C 0 N TRP C 1 1555 1555 1.33 LINK CH3 ACE C 0 SG CYS C 15 1555 1555 1.77 LINK C SER C 3 N ALY C 4 1555 1555 1.32 LINK C ALY C 4 N LYS C 5 1555 1555 1.33 LINK C ALA C 7 N ALY C 8 1555 1555 1.33 LINK C ALY C 8 N TRP C 9 1555 1555 1.34 LINK C CYS C 15 N NH2 C 16 1555 1555 1.33 LINK C ACE D 0 N TRP D 1 1555 1555 1.33 LINK C SER D 3 N ALY D 4 1555 1555 1.33 LINK C ALY D 4 N LYS D 5 1555 1555 1.33 LINK C ALA D 7 N ALY D 8 1555 1555 1.34 LINK C ALY D 8 N TRP D 9 1555 1555 1.34 LINK C CYS D 15 N NH2 D 16 1555 1555 1.33 CRYST1 41.682 54.370 76.924 90.00 93.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023991 0.000000 0.001616 0.00000 SCALE2 0.000000 0.018392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013029 0.00000