HEADER VIRAL PROTEIN 15-JUL-22 8DPJ TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ001023030 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 8DPJ 1 REMARK REVDAT 2 29-MAR-23 8DPJ 1 JRNL REVDAT 1 14-SEP-22 8DPJ 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 10306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8000 - 3.5300 0.98 3374 151 0.1915 0.2385 REMARK 3 2 3.5300 - 2.8000 1.00 3237 165 0.2964 0.3596 REMARK 3 3 2.8000 - 2.4500 0.99 3225 154 0.2952 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.236 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1559 REMARK 3 ANGLE : 0.861 2107 REMARK 3 CHIRALITY : 0.048 218 REMARK 3 PLANARITY : 0.007 265 REMARK 3 DIHEDRAL : 12.254 224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4171 19.2951 3.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.9189 T22: 0.6511 REMARK 3 T33: 0.8382 T12: -0.1377 REMARK 3 T13: 0.3569 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 3.5958 L22: 1.1781 REMARK 3 L33: 4.9250 L12: -0.5312 REMARK 3 L13: 0.5751 L23: 1.3500 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.5088 S13: -0.3239 REMARK 3 S21: 0.0146 S22: -0.2730 S23: -0.2342 REMARK 3 S31: 0.8692 S32: 0.2577 S33: 0.3166 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6744 22.2385 13.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.6156 T22: 0.5588 REMARK 3 T33: 0.7646 T12: -0.0630 REMARK 3 T13: 0.3088 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.7329 L22: 3.5116 REMARK 3 L33: 7.3105 L12: 2.2424 REMARK 3 L13: 2.5096 L23: 3.1419 REMARK 3 S TENSOR REMARK 3 S11: -0.6377 S12: -0.1828 S13: -0.0674 REMARK 3 S21: -0.0395 S22: 0.1110 S23: 0.5210 REMARK 3 S31: -0.4459 S32: 0.9442 S33: 0.4315 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2314 22.2961 21.8140 REMARK 3 T TENSOR REMARK 3 T11: 1.1129 T22: 0.8255 REMARK 3 T33: 0.7695 T12: 0.0153 REMARK 3 T13: 0.2131 T23: 0.3195 REMARK 3 L TENSOR REMARK 3 L11: 7.0847 L22: 2.8416 REMARK 3 L33: 2.4827 L12: -1.9196 REMARK 3 L13: -0.1997 L23: 0.9710 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: -0.7085 S13: -0.5891 REMARK 3 S21: 0.9729 S22: -0.3088 S23: -0.3842 REMARK 3 S31: 0.8898 S32: 0.4450 S33: 0.3977 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1109 17.2865 23.9071 REMARK 3 T TENSOR REMARK 3 T11: 1.0274 T22: 0.9064 REMARK 3 T33: 0.6738 T12: -0.1258 REMARK 3 T13: 0.3192 T23: 0.3256 REMARK 3 L TENSOR REMARK 3 L11: 4.8556 L22: 3.0448 REMARK 3 L33: 3.1713 L12: -3.5166 REMARK 3 L13: 1.3324 L23: 0.1469 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: -1.1190 S13: -1.4608 REMARK 3 S21: 0.8226 S22: -0.0748 S23: 0.6383 REMARK 3 S31: 0.2433 S32: -0.6827 S33: 0.1736 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2795 11.1819 27.4626 REMARK 3 T TENSOR REMARK 3 T11: 1.7797 T22: 1.2255 REMARK 3 T33: 1.1122 T12: -0.0973 REMARK 3 T13: 0.2478 T23: 0.3982 REMARK 3 L TENSOR REMARK 3 L11: 7.4591 L22: 2.0032 REMARK 3 L33: 6.6580 L12: -1.1754 REMARK 3 L13: -4.8207 L23: 1.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.7227 S12: -0.7552 S13: -1.7270 REMARK 3 S21: -0.9321 S22: 1.3126 S23: 2.5208 REMARK 3 S31: 0.6664 S32: -0.9336 S33: -1.3543 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8852 20.1483 29.2348 REMARK 3 T TENSOR REMARK 3 T11: 1.2267 T22: 0.9555 REMARK 3 T33: 0.7410 T12: -0.1639 REMARK 3 T13: 0.5115 T23: 0.3452 REMARK 3 L TENSOR REMARK 3 L11: 3.9693 L22: 4.0539 REMARK 3 L33: 4.0055 L12: -0.2438 REMARK 3 L13: -0.1171 L23: 1.5205 REMARK 3 S TENSOR REMARK 3 S11: -0.1779 S12: -1.7915 S13: -0.7108 REMARK 3 S21: 1.7517 S22: 0.2586 S23: 0.1286 REMARK 3 S31: -0.2334 S32: -0.4739 S33: 0.2048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6629 23.1051 16.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.7903 T22: 0.8904 REMARK 3 T33: 0.8588 T12: -0.3015 REMARK 3 T13: 0.6216 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.6006 L22: 3.1370 REMARK 3 L33: 2.6568 L12: -1.8657 REMARK 3 L13: -0.3407 L23: -0.2705 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.1748 S13: -0.6292 REMARK 3 S21: -0.1792 S22: -0.2276 S23: 1.8679 REMARK 3 S31: 0.2581 S32: -0.9096 S33: -0.1943 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 74.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 8DIP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.79900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.07900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.79900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.07900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.79900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.07900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.79900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.07900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.79900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.07900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.79900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.07900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.79900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.07900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.79900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.79900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.07900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 34 NZ REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 ARG A 170 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 190 OG SER A 194 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -168.76 -104.47 REMARK 500 GLU A 141 4.82 -69.85 REMARK 500 THR A 162 -73.06 65.75 REMARK 500 SER A 194 -15.23 -140.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 203 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 100.6 REMARK 620 3 GLU A 119 OE2 168.2 87.7 REMARK 620 4 ILE A 120 O 82.2 89.6 89.5 REMARK 620 5 SE9 A 204 O13 109.1 108.0 75.8 156.1 REMARK 620 6 SE9 A 204 O15 78.3 170.5 92.2 80.8 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 86.1 REMARK 620 3 SE9 A 204 O10 102.8 161.5 REMARK 620 4 SE9 A 204 O13 133.0 93.1 68.9 REMARK 620 N 1 2 3 DBREF 8DPJ A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 8DPJ A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 8DPJ MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DPJ GLY A 51 UNP C6H0Y9 LINKER SEQADV 8DPJ GLY A 52 UNP C6H0Y9 LINKER SEQADV 8DPJ SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET QQ4 A 203 41 HET SE9 A 204 31 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SE9 (2P)-5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4-YL)ETHYL]-6- HETNAM 2 SE9 OXO-2-[3-(TRIFLUOROMETHYL)PHENYL]-1,6- HETNAM 3 SE9 DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 QQ4 C36 H56 N6 O6 FORMUL 5 SE9 C20 H17 F3 N4 O4 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *3(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.44 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.61 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.04 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.15 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.27 LINK O ILE A 120 MN MN A 201 1555 1555 2.12 LINK MN MN A 201 O13 SE9 A 204 1555 1555 2.37 LINK MN MN A 201 O15 SE9 A 204 1555 1555 1.95 LINK MN MN A 202 O10 SE9 A 204 1555 1555 2.67 LINK MN MN A 202 O13 SE9 A 204 1555 1555 2.34 CRYST1 89.598 89.598 134.158 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007454 0.00000