data_8DPY # _entry.id 8DPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DPY pdb_00008dpy 10.2210/pdb8dpy/pdb WWPDB D_1000266757 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-24 2 'Structure model' 1 1 2023-10-11 3 'Structure model' 2 0 2023-11-15 4 'Structure model' 2 1 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 3 'Structure model' atom_site 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' pdbx_validate_main_chain_plane 9 3 'Structure model' pdbx_validate_peptide_omega 10 3 'Structure model' pdbx_validate_rmsd_angle 11 3 'Structure model' struct_conn 12 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_atom_site.auth_atom_id' 4 3 'Structure model' '_atom_site.label_atom_id' 5 3 'Structure model' '_chem_comp_atom.atom_id' 6 3 'Structure model' '_chem_comp_bond.atom_id_1' 7 3 'Structure model' '_chem_comp_bond.atom_id_2' 8 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DPY _pdbx_database_status.recvd_initial_deposition_date 2022-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email arora@nyu.edu _pdbx_contact_author.name_first Paramjit _pdbx_contact_author.name_last Arora _pdbx_contact_author.name_mi S _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5315-401X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lu, B.' 1 0000-0001-6424-2197 'Vecchioni, S.' 2 0000-0001-8243-650X 'Nazzaro, A.' 3 ? 'Arora, P.S.' 4 0000-0001-5315-401X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 62 _citation.language ? _citation.page_first e202303943 _citation.page_last e202303943 _citation.title 'Macrocyclic beta-Sheets Stabilized by Hydrogen Bond Surrogates.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202303943 _citation.pdbx_database_id_PubMed 37170337 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nazzaro, A.' 1 ? primary 'Lu, B.' 2 ? primary 'Sawyer, N.' 3 0000-0002-6393-5626 primary 'Watkins, A.M.' 4 0000-0003-1617-1720 primary 'Arora, P.S.' 5 0000-0001-5315-401X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'beta sheet-forming peptide with flexible linker' 1433.628 2 ? ? ? ? 2 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'TYRV(T7C)TWET(T7H)' _entity_poly.pdbx_seq_one_letter_code_can TYRVXTWETX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 TYR n 1 3 ARG n 1 4 VAL n 1 5 T7C n 1 6 THR n 1 7 TRP n 1 8 GLU n 1 9 THR n 1 10 T7H n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 T7C non-polymer . '3-({2-[(2-amino-2-oxoethyl)amino]ethyl}sulfanyl)propanoic acid' ? 'C7 H14 N2 O3 S' 206.263 T7H non-polymer . '3-({2-[(carboxymethyl)amino]ethyl}sulfanyl)propanoic acid' ? 'C7 H13 N O4 S' 207.247 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 T7C 5 5 5 T7C LK1 A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 T7H 10 10 10 T7H LK2 A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 ARG 3 3 3 ARG ARG B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 T7C 5 5 5 T7C LK1 B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 TRP 7 7 7 TRP TRP B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 THR 9 9 9 THR THR B . n B 1 10 T7H 10 10 10 T7H LK2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 21 HOH HOH A . C 2 HOH 2 102 11 HOH HOH A . C 2 HOH 3 103 1 HOH HOH A . C 2 HOH 4 104 13 HOH HOH A . C 2 HOH 5 105 2 HOH HOH A . C 2 HOH 6 106 5 HOH HOH A . C 2 HOH 7 107 12 HOH HOH A . C 2 HOH 8 108 10 HOH HOH A . C 2 HOH 9 109 3 HOH HOH A . C 2 HOH 10 110 16 HOH HOH A . C 2 HOH 11 111 14 HOH HOH A . D 2 HOH 1 101 23 HOH HOH B . D 2 HOH 2 102 17 HOH HOH B . D 2 HOH 3 103 9 HOH HOH B . D 2 HOH 4 104 20 HOH HOH B . D 2 HOH 5 105 6 HOH HOH B . D 2 HOH 6 106 4 HOH HOH B . D 2 HOH 7 107 18 HOH HOH B . D 2 HOH 8 108 22 HOH HOH B . D 2 HOH 9 109 7 HOH HOH B . D 2 HOH 10 110 8 HOH HOH B . D 2 HOH 11 111 15 HOH HOH B . D 2 HOH 12 112 19 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8DPY _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.176 _cell.length_a_esd ? _cell.length_b 43.176 _cell.length_b_esd ? _cell.length_c 22.223 _cell.length_c_esd ? _cell.volume 35877.166 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall 'P 62' _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DPY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.25 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4 mM peptide, 1.4 M sodium phosphate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-02-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92010 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X17B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92010 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X17B1 _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate 9.07 _reflns.entry_id 8DPY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.997 _reflns.d_resolution_low 37.392 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11294 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 0.997 _reflns_shell.d_res_low 1.056 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 565 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.432 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 16.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DPY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.00 _refine.ls_d_res_low 21.59 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11290 _refine.ls_number_reflns_R_free 594 _refine.ls_number_reflns_R_work 10696 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.39 _refine.ls_percent_reflns_R_free 5.26 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1805 _refine.ls_R_factor_R_free 0.2063 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1790 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NMR Solution Structure' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.9662 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0642 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.00 _refine_hist.d_res_low 21.59 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 219 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 196 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0185 ? 221 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.6745 ? 289 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0989 ? 33 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0185 ? 29 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.8459 ? 88 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.00 1.10 . . 82 1430 46.72 . . . 0.3183 . 0.2597 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.10 1.26 . . 175 3024 98.73 . . . 0.2121 . 0.1986 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.26 1.58 . . 157 3102 99.85 . . . 0.2108 . 0.2017 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.58 21.59 . . 180 3140 99.79 . . . 0.1965 . 0.1614 . . . . . . . . . . . # _struct.entry_id 8DPY _struct.title 'Synthetic Beta Sheet Macrocycle Stabilized by Hydrogen Bond Surrogates' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DPY _struct_keywords.text 'Synthetic peptide, beta sheet, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8DPY _struct_ref.pdbx_db_accession 8DPY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DPY A 1 ? 10 ? 8DPY 1 ? 10 ? 1 10 2 1 8DPY B 1 ? 10 ? 8DPY 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 1 N ? ? ? 1_555 A T7H 10 C ? ? A THR 1 A T7H 10 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale2 covale both ? A VAL 4 C ? ? ? 1_555 A T7C 5 N ? ? A VAL 4 A T7C 5 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale3 covale both ? A T7C 5 C ? ? ? 1_555 A THR 6 N ? ? A T7C 5 A THR 6 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale4 covale both ? A THR 9 C ? ? ? 1_555 A T7H 10 N ? ? A THR 9 A T7H 10 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale5 covale both ? B THR 1 N ? ? ? 1_555 B T7H 10 C ? ? B THR 1 B T7H 10 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale6 covale both ? B VAL 4 C ? ? ? 1_555 B T7C 5 N ? ? B VAL 4 B T7C 5 1_555 ? ? ? ? ? ? ? 1.473 ? ? covale7 covale both ? B T7C 5 C ? ? ? 1_555 B THR 6 N ? ? B T7C 5 B THR 6 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale8 covale both ? B THR 9 C ? ? ? 1_555 B T7H 10 N ? ? B THR 9 B T7H 10 1_555 ? ? ? ? ? ? ? 1.469 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 8 ? A O A HOH 101 ? ? 2.12 2 1 OE1 A GLU 8 ? A O A HOH 102 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A T7C 5 ? ? C A T7C 5 ? ? N A THR 6 ? ? 96.82 117.20 -20.38 2.20 Y 2 1 CA B VAL 4 ? ? C B VAL 4 ? ? N B T7C 5 ? ? 142.23 117.20 25.03 2.20 Y 3 1 O B VAL 4 ? ? C B VAL 4 ? ? N B T7C 5 ? ? 88.56 122.70 -34.14 1.60 Y 4 1 CA B T7C 5 ? ? C B T7C 5 ? ? N B THR 6 ? ? 78.72 117.20 -38.48 2.20 Y # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 T7C A 5 ? ? THR A 6 ? ? -142.41 2 1 T7C B 5 ? ? THR B 6 ? A -131.67 3 1 T7C B 5 ? ? THR B 6 ? B -131.73 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 T7C A 5 ? ? 18.00 2 1 VAL B 4 ? ? 28.13 3 1 T7C B 5 ? ? 19.86 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 103 ? C HOH . 2 1 B HOH 111 ? D HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/3 3 y,-x+y,z+2/3 4 -y,x-y,z+2/3 5 -x+y,-x,z+1/3 6 -x,-y,z # _pdbx_entry_details.entry_id 8DPY _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 GLU N N N N 28 GLU CA C N S 29 GLU C C N N 30 GLU O O N N 31 GLU CB C N N 32 GLU CG C N N 33 GLU CD C N N 34 GLU OE1 O N N 35 GLU OE2 O N N 36 GLU OXT O N N 37 GLU H H N N 38 GLU H2 H N N 39 GLU HA H N N 40 GLU HB2 H N N 41 GLU HB3 H N N 42 GLU HG2 H N N 43 GLU HG3 H N N 44 GLU HE2 H N N 45 GLU HXT H N N 46 HOH O O N N 47 HOH H1 H N N 48 HOH H2 H N N 49 T7C C12 C N N 50 T7C CA C N N 51 T7C C13 C N N 52 T7C C1 C N N 53 T7C C2 C N N 54 T7C C C N N 55 T7C C4 C N N 56 T7C N1 N N N 57 T7C N N N N 58 T7C O O N N 59 T7C O5 O N N 60 T7C S1 S N N 61 T7C HA2 H N N 62 T7C HA3 H N N 63 T7C H3 H N N 64 T7C H4 H N N 65 T7C H5 H N N 66 T7C H6 H N N 67 T7C H7 H N N 68 T7C H8 H N N 69 T7C H11 H N N 70 T7C H12 H N N 71 T7C H13 H N N 72 T7C H14 H N N 73 T7C H H N N 74 T7C OXT O N N 75 T7C HXT H N N 76 T7H C12 C N N 77 T7H C13 C N N 78 T7H CA C N N 79 T7H C1 C N N 80 T7H C2 C N N 81 T7H C C N N 82 T7H C4 C N N 83 T7H N N N N 84 T7H O O N N 85 T7H O2 O N N 86 T7H O5 O N N 87 T7H S1 S N N 88 T7H OXT O N N 89 T7H H1 H N N 90 T7H H11 H N N 91 T7H HA2 H N N 92 T7H HA3 H N N 93 T7H H5 H N N 94 T7H H6 H N N 95 T7H H7 H N N 96 T7H H8 H N N 97 T7H H9 H N N 98 T7H H10 H N N 99 T7H H H N N 100 T7H H13 H N N 101 T7H HXT H N N 102 THR N N N N 103 THR CA C N S 104 THR C C N N 105 THR O O N N 106 THR CB C N R 107 THR OG1 O N N 108 THR CG2 C N N 109 THR OXT O N N 110 THR H H N N 111 THR H2 H N N 112 THR HA H N N 113 THR HB H N N 114 THR HG1 H N N 115 THR HG21 H N N 116 THR HG22 H N N 117 THR HG23 H N N 118 THR HXT H N N 119 TRP N N N N 120 TRP CA C N S 121 TRP C C N N 122 TRP O O N N 123 TRP CB C N N 124 TRP CG C Y N 125 TRP CD1 C Y N 126 TRP CD2 C Y N 127 TRP NE1 N Y N 128 TRP CE2 C Y N 129 TRP CE3 C Y N 130 TRP CZ2 C Y N 131 TRP CZ3 C Y N 132 TRP CH2 C Y N 133 TRP OXT O N N 134 TRP H H N N 135 TRP H2 H N N 136 TRP HA H N N 137 TRP HB2 H N N 138 TRP HB3 H N N 139 TRP HD1 H N N 140 TRP HE1 H N N 141 TRP HE3 H N N 142 TRP HZ2 H N N 143 TRP HZ3 H N N 144 TRP HH2 H N N 145 TRP HXT H N N 146 TYR N N N N 147 TYR CA C N S 148 TYR C C N N 149 TYR O O N N 150 TYR CB C N N 151 TYR CG C Y N 152 TYR CD1 C Y N 153 TYR CD2 C Y N 154 TYR CE1 C Y N 155 TYR CE2 C Y N 156 TYR CZ C Y N 157 TYR OH O N N 158 TYR OXT O N N 159 TYR H H N N 160 TYR H2 H N N 161 TYR HA H N N 162 TYR HB2 H N N 163 TYR HB3 H N N 164 TYR HD1 H N N 165 TYR HD2 H N N 166 TYR HE1 H N N 167 TYR HE2 H N N 168 TYR HH H N N 169 TYR HXT H N N 170 VAL N N N N 171 VAL CA C N S 172 VAL C C N N 173 VAL O O N N 174 VAL CB C N N 175 VAL CG1 C N N 176 VAL CG2 C N N 177 VAL OXT O N N 178 VAL H H N N 179 VAL H2 H N N 180 VAL HA H N N 181 VAL HB H N N 182 VAL HG11 H N N 183 VAL HG12 H N N 184 VAL HG13 H N N 185 VAL HG21 H N N 186 VAL HG22 H N N 187 VAL HG23 H N N 188 VAL HXT H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 GLU N CA sing N N 27 GLU N H sing N N 28 GLU N H2 sing N N 29 GLU CA C sing N N 30 GLU CA CB sing N N 31 GLU CA HA sing N N 32 GLU C O doub N N 33 GLU C OXT sing N N 34 GLU CB CG sing N N 35 GLU CB HB2 sing N N 36 GLU CB HB3 sing N N 37 GLU CG CD sing N N 38 GLU CG HG2 sing N N 39 GLU CG HG3 sing N N 40 GLU CD OE1 doub N N 41 GLU CD OE2 sing N N 42 GLU OE2 HE2 sing N N 43 GLU OXT HXT sing N N 44 HOH O H1 sing N N 45 HOH O H2 sing N N 46 T7C O5 C12 doub N N 47 T7C C13 C12 sing N N 48 T7C C13 N sing N N 49 T7C C12 N1 sing N N 50 T7C S1 C1 sing N N 51 T7C S1 C4 sing N N 52 T7C C1 CA sing N N 53 T7C CA N sing N N 54 T7C C4 C2 sing N N 55 T7C O C doub N N 56 T7C C2 C sing N N 57 T7C CA HA2 sing N N 58 T7C CA HA3 sing N N 59 T7C C13 H3 sing N N 60 T7C C13 H4 sing N N 61 T7C C1 H5 sing N N 62 T7C C1 H6 sing N N 63 T7C C2 H7 sing N N 64 T7C C2 H8 sing N N 65 T7C C4 H11 sing N N 66 T7C C4 H12 sing N N 67 T7C N1 H13 sing N N 68 T7C N1 H14 sing N N 69 T7C N H sing N N 70 T7C C OXT sing N N 71 T7C OXT HXT sing N N 72 T7H N CA sing N N 73 T7H N C12 sing N N 74 T7H CA C1 sing N N 75 T7H C12 C13 sing N N 76 T7H O2 C13 doub N N 77 T7H C1 S1 sing N N 78 T7H C13 O5 sing N N 79 T7H C2 C sing N N 80 T7H C2 C4 sing N N 81 T7H C O doub N N 82 T7H S1 C4 sing N N 83 T7H C OXT sing N N 84 T7H C12 H1 sing N N 85 T7H C12 H11 sing N N 86 T7H CA HA2 sing N N 87 T7H CA HA3 sing N N 88 T7H C1 H5 sing N N 89 T7H C1 H6 sing N N 90 T7H C2 H7 sing N N 91 T7H C2 H8 sing N N 92 T7H C4 H9 sing N N 93 T7H C4 H10 sing N N 94 T7H N H sing N N 95 T7H O5 H13 sing N N 96 T7H OXT HXT sing N N 97 THR N CA sing N N 98 THR N H sing N N 99 THR N H2 sing N N 100 THR CA C sing N N 101 THR CA CB sing N N 102 THR CA HA sing N N 103 THR C O doub N N 104 THR C OXT sing N N 105 THR CB OG1 sing N N 106 THR CB CG2 sing N N 107 THR CB HB sing N N 108 THR OG1 HG1 sing N N 109 THR CG2 HG21 sing N N 110 THR CG2 HG22 sing N N 111 THR CG2 HG23 sing N N 112 THR OXT HXT sing N N 113 TRP N CA sing N N 114 TRP N H sing N N 115 TRP N H2 sing N N 116 TRP CA C sing N N 117 TRP CA CB sing N N 118 TRP CA HA sing N N 119 TRP C O doub N N 120 TRP C OXT sing N N 121 TRP CB CG sing N N 122 TRP CB HB2 sing N N 123 TRP CB HB3 sing N N 124 TRP CG CD1 doub Y N 125 TRP CG CD2 sing Y N 126 TRP CD1 NE1 sing Y N 127 TRP CD1 HD1 sing N N 128 TRP CD2 CE2 doub Y N 129 TRP CD2 CE3 sing Y N 130 TRP NE1 CE2 sing Y N 131 TRP NE1 HE1 sing N N 132 TRP CE2 CZ2 sing Y N 133 TRP CE3 CZ3 doub Y N 134 TRP CE3 HE3 sing N N 135 TRP CZ2 CH2 doub Y N 136 TRP CZ2 HZ2 sing N N 137 TRP CZ3 CH2 sing Y N 138 TRP CZ3 HZ3 sing N N 139 TRP CH2 HH2 sing N N 140 TRP OXT HXT sing N N 141 TYR N CA sing N N 142 TYR N H sing N N 143 TYR N H2 sing N N 144 TYR CA C sing N N 145 TYR CA CB sing N N 146 TYR CA HA sing N N 147 TYR C O doub N N 148 TYR C OXT sing N N 149 TYR CB CG sing N N 150 TYR CB HB2 sing N N 151 TYR CB HB3 sing N N 152 TYR CG CD1 doub Y N 153 TYR CG CD2 sing Y N 154 TYR CD1 CE1 sing Y N 155 TYR CD1 HD1 sing N N 156 TYR CD2 CE2 doub Y N 157 TYR CD2 HD2 sing N N 158 TYR CE1 CZ doub Y N 159 TYR CE1 HE1 sing N N 160 TYR CE2 CZ sing Y N 161 TYR CE2 HE2 sing N N 162 TYR CZ OH sing N N 163 TYR OH HH sing N N 164 TYR OXT HXT sing N N 165 VAL N CA sing N N 166 VAL N H sing N N 167 VAL N H2 sing N N 168 VAL CA C sing N N 169 VAL CA CB sing N N 170 VAL CA HA sing N N 171 VAL C O doub N N 172 VAL C OXT sing N N 173 VAL CB CG1 sing N N 174 VAL CB CG2 sing N N 175 VAL CB HB sing N N 176 VAL CG1 HG11 sing N N 177 VAL CG1 HG12 sing N N 178 VAL CG1 HG13 sing N N 179 VAL CG2 HG21 sing N N 180 VAL CG2 HG22 sing N N 181 VAL CG2 HG23 sing N N 182 VAL OXT HXT sing N N 183 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R35GM130333 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 T7C ? ? T7C ? ? 'SUBJECT OF INVESTIGATION' ? 2 T7H ? ? T7H ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'NMR Solution Structure' # _space_group.name_H-M_alt 'P 62' _space_group.name_Hall 'P 62' _space_group.IT_number 171 _space_group.crystal_system hexagonal _space_group.id 1 # _atom_sites.entry_id 8DPY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023161 _atom_sites.fract_transf_matrix[1][2] 0.013372 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026744 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.044998 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_