HEADER VIRAL PROTEIN 21-JUL-22 8DRX TITLE PRODUCT STRUCTURE OF SARS-COV-2 MPRO C145A MUTANT IN COMPLEX WITH TITLE 2 NSP10-NSP11 (C10) CUT SITE SEQUENCE (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN OF 3C-LIKE PROTEINASE NSP5 AND NSP10-NSP11 COMPND 3 (C10) CUT SITE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 6 NSP5,SARS CORONAVIRUS MAIN PROTEINASE,NSP10,GROWTH FACTOR-LIKE COMPND 7 PEPTIDE,GFL; COMPND 8 EC: 3.4.22.69; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, SARS-COV-2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,M.PAETZEL,N.C.J.STRYNADKA REVDAT 2 18-OCT-23 8DRX 1 REMARK REVDAT 1 21-SEP-22 8DRX 0 JRNL AUTH J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,F.GENTILE,A.T.TON, JRNL AUTH 2 M.NG,A.CHERKASOV,N.C.J.STRYNADKA,M.PAETZEL JRNL TITL X-RAY CRYSTALLOGRAPHIC CHARACTERIZATION OF THE SARS-COV-2 JRNL TITL 2 MAIN PROTEASE POLYPROTEIN CLEAVAGE SITES ESSENTIAL FOR VIRAL JRNL TITL 3 PROCESSING AND MATURATION. JRNL REF NAT COMMUN V. 13 5196 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36057636 JRNL DOI 10.1038/S41467-022-32854-4 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 82385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.430 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0000 - 3.6100 0.98 6028 148 0.1396 0.1776 REMARK 3 2 3.6100 - 2.8700 0.98 5923 155 0.1491 0.1682 REMARK 3 3 2.8700 - 2.5100 0.97 5905 143 0.1656 0.1976 REMARK 3 4 2.5100 - 2.2800 0.97 5855 143 0.1652 0.1656 REMARK 3 5 2.2800 - 2.1100 0.96 5813 152 0.1626 0.1980 REMARK 3 6 2.1100 - 1.9900 0.95 5734 139 0.1651 0.2164 REMARK 3 7 1.9900 - 1.8900 0.95 5775 135 0.1618 0.1991 REMARK 3 8 1.8900 - 1.8100 0.95 5706 155 0.1863 0.2113 REMARK 3 9 1.8100 - 1.7400 0.94 5659 137 0.2042 0.2427 REMARK 3 10 1.7400 - 1.6800 0.94 5667 142 0.1948 0.2153 REMARK 3 11 1.6800 - 1.6300 0.93 5609 135 0.2061 0.2499 REMARK 3 12 1.6300 - 1.5800 0.93 5587 138 0.2134 0.2301 REMARK 3 13 1.5800 - 1.5400 0.92 5585 147 0.2286 0.2492 REMARK 3 14 1.5400 - 1.5000 0.92 5534 136 0.2739 0.2737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2662 43.6214 5.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1259 REMARK 3 T33: 0.1477 T12: -0.0069 REMARK 3 T13: -0.0175 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.7974 L22: 0.9450 REMARK 3 L33: 1.8305 L12: -1.0983 REMARK 3 L13: -1.7489 L23: 0.5183 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.0046 S13: -0.0924 REMARK 3 S21: 0.0126 S22: 0.0076 S23: -0.0560 REMARK 3 S31: 0.1037 S32: 0.0715 S33: 0.0056 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8410 38.7142 -1.8207 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.2306 REMARK 3 T33: 0.2830 T12: 0.0511 REMARK 3 T13: 0.0188 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.7299 L22: 3.7157 REMARK 3 L33: 1.7319 L12: 0.9630 REMARK 3 L13: -0.6530 L23: -1.0091 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0541 S13: -0.4139 REMARK 3 S21: -0.1094 S22: -0.1263 S23: -0.6898 REMARK 3 S31: 0.1801 S32: 0.3847 S33: 0.1233 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0719 52.3170 3.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1307 REMARK 3 T33: 0.1461 T12: -0.0100 REMARK 3 T13: 0.0073 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.4402 L22: 1.6039 REMARK 3 L33: 2.1120 L12: -0.1359 REMARK 3 L13: 0.1641 L23: -0.3177 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0501 S13: -0.0342 REMARK 3 S21: -0.0010 S22: 0.0390 S23: 0.0251 REMARK 3 S31: -0.0923 S32: 0.0139 S33: -0.0250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4968 64.4316 1.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1673 REMARK 3 T33: 0.1868 T12: -0.0299 REMARK 3 T13: 0.0058 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.1535 L22: 1.0001 REMARK 3 L33: 0.8736 L12: -2.1329 REMARK 3 L13: -1.8370 L23: 0.7873 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.1068 S13: 0.3951 REMARK 3 S21: -0.0873 S22: 0.0344 S23: -0.1966 REMARK 3 S31: -0.1232 S32: 0.1460 S33: -0.1717 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6125 73.7283 5.0266 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1277 REMARK 3 T33: 0.2021 T12: 0.0114 REMARK 3 T13: 0.0117 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.4048 L22: 1.2763 REMARK 3 L33: 2.3059 L12: 0.4538 REMARK 3 L13: 0.0633 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0933 S13: 0.3243 REMARK 3 S21: 0.0585 S22: 0.0854 S23: 0.0605 REMARK 3 S31: -0.1876 S32: -0.0677 S33: -0.0686 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6191 56.3488 6.8755 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.2110 REMARK 3 T33: 0.1755 T12: -0.0160 REMARK 3 T13: 0.0086 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 5.0104 L22: 6.9186 REMARK 3 L33: 0.9569 L12: 5.8554 REMARK 3 L13: 1.4377 L23: 1.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.0656 S13: 0.1485 REMARK 3 S21: 0.0494 S22: 0.0926 S23: -0.2001 REMARK 3 S31: 0.0560 S32: -0.0222 S33: -0.0136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0742 41.0117 20.5514 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1638 REMARK 3 T33: 0.1449 T12: -0.0030 REMARK 3 T13: -0.0037 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.7275 L22: 1.5191 REMARK 3 L33: 1.5284 L12: 1.9146 REMARK 3 L13: -1.2636 L23: -0.8636 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.0238 S13: -0.0725 REMARK 3 S21: -0.0296 S22: 0.0589 S23: 0.0460 REMARK 3 S31: 0.0881 S32: -0.1438 S33: -0.0404 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7725 42.7732 25.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1816 REMARK 3 T33: 0.1511 T12: 0.0050 REMARK 3 T13: 0.0154 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.2438 L22: 2.2272 REMARK 3 L33: 1.8809 L12: 0.4964 REMARK 3 L13: 0.1199 L23: -0.1700 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.1086 S13: -0.0550 REMARK 3 S21: 0.0887 S22: 0.1225 S23: 0.1658 REMARK 3 S31: 0.0726 S32: -0.2310 S33: -0.0344 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4955 59.6525 30.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.1965 REMARK 3 T33: 0.1708 T12: 0.0324 REMARK 3 T13: 0.0179 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.4267 L22: 2.5263 REMARK 3 L33: 0.8122 L12: 2.9317 REMARK 3 L13: -1.0298 L23: -0.8105 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: -0.0668 S13: 0.4195 REMARK 3 S21: 0.2172 S22: -0.0145 S23: 0.3425 REMARK 3 S31: -0.1781 S32: -0.1350 S33: -0.1523 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4870 73.8222 33.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.2878 REMARK 3 T33: 0.3134 T12: -0.0954 REMARK 3 T13: 0.0649 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 1.6686 L22: 2.0827 REMARK 3 L33: 4.6085 L12: 1.1780 REMARK 3 L13: -1.1144 L23: -0.7629 REMARK 3 S TENSOR REMARK 3 S11: 0.3885 S12: -0.4677 S13: 0.5363 REMARK 3 S21: 0.1172 S22: -0.1857 S23: -0.0273 REMARK 3 S31: -1.0269 S32: 0.6472 S33: -0.1795 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5091 65.9289 33.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.1895 REMARK 3 T33: 0.1478 T12: -0.0646 REMARK 3 T13: 0.0076 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 4.4982 L22: 2.0141 REMARK 3 L33: 3.5126 L12: -1.0025 REMARK 3 L13: -1.0573 L23: 0.6121 REMARK 3 S TENSOR REMARK 3 S11: 0.1505 S12: -0.1979 S13: 0.1866 REMARK 3 S21: -0.0134 S22: -0.0799 S23: -0.0433 REMARK 3 S31: -0.3834 S32: 0.1979 S33: -0.0622 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9404 71.3591 22.1357 REMARK 3 T TENSOR REMARK 3 T11: 0.4256 T22: 0.1725 REMARK 3 T33: 0.2479 T12: 0.0469 REMARK 3 T13: -0.0191 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.4688 L22: 2.8781 REMARK 3 L33: 1.0461 L12: 0.2527 REMARK 3 L13: 0.0158 L23: 1.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: 0.3410 S13: 0.6945 REMARK 3 S21: -0.0529 S22: -0.1311 S23: 0.0796 REMARK 3 S31: -0.8022 S32: -0.2991 S33: 0.0298 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1940 53.5597 23.1526 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.2459 REMARK 3 T33: 0.1951 T12: 0.0200 REMARK 3 T13: -0.0420 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 5.5651 L22: 8.7460 REMARK 3 L33: 0.4908 L12: -6.9734 REMARK 3 L13: -1.0200 L23: 1.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: 0.0313 S13: -0.1447 REMARK 3 S21: -0.1429 S22: -0.2448 S23: 0.1507 REMARK 3 S31: 0.0858 S32: 0.2157 S33: 0.1082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.18 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82392 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-NA CITRATE (PH 5.6), 35% T REMARK 280 -BUTANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 LEU B 50 CG CD1 CD2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -125.64 49.66 REMARK 500 ASN A 84 -120.10 53.62 REMARK 500 TYR A 154 -114.61 53.02 REMARK 500 ASP A 155 44.16 -98.81 REMARK 500 PRO A 184 38.55 -87.72 REMARK 500 ASP B 33 -132.18 51.29 REMARK 500 MET B 49 23.88 -76.65 REMARK 500 ASN B 51 54.70 32.80 REMARK 500 ASN B 84 -121.34 54.52 REMARK 500 TYR B 154 -103.73 54.61 REMARK 500 GLN B 192 86.20 -160.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET B 130 10.04 REMARK 500 MET B 130 10.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 221 O REMARK 620 2 ASN A 221 OD1 74.5 REMARK 620 3 PHE A 223 O 109.1 92.1 REMARK 620 4 ASP A 263 O 148.9 126.7 93.8 REMARK 620 5 ASP A 263 OD1 87.5 160.9 87.9 72.3 REMARK 620 6 SER A 267 OG 86.6 79.3 159.6 77.1 106.2 REMARK 620 7 HOH A 509 O 81.2 121.7 146.1 68.3 59.7 46.7 REMARK 620 N 1 2 3 4 5 6 DBREF 8DRX A 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 DBREF 8DRX A 301 306 UNP P0DTD1 R1AB_SARS2 4387 4392 DBREF 8DRX B 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 DBREF 8DRX B 301 306 UNP P0DTD1 R1AB_SARS2 4387 4392 SEQADV 8DRX ALA A 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 8DRX ALA B 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS ARG GLU PRO MET LEU GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS ARG GLU PRO MET LEU GLN HET NA A 401 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *598(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 ARG A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 ASN B 53 ARG B 60 1 8 HELIX 14 AB5 SER B 62 PHE B 66 5 5 HELIX 15 AB6 ILE B 200 ASN B 214 1 15 HELIX 16 AB7 THR B 226 MET B 235 1 10 HELIX 17 AB8 LYS B 236 ASN B 238 5 3 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 ARG B 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ILE A 152 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O THR A 175 N MET A 162 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 89 N VAL B 36 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK O ASN A 221 NA NA A 401 1555 1555 2.43 LINK OD1 ASN A 221 NA NA A 401 1555 1555 2.35 LINK O PHE A 223 NA NA A 401 1555 1555 2.41 LINK O ASP A 263 NA NA A 401 1555 1555 2.63 LINK OD1BASP A 263 NA NA A 401 1555 1555 2.26 LINK OG SER A 267 NA NA A 401 1555 1555 3.16 LINK NA NA A 401 O HOH A 509 1555 1555 3.03 CRYST1 49.670 107.430 53.420 90.00 103.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020133 0.000000 0.004960 0.00000 SCALE2 0.000000 0.009308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019279 0.00000