HEADER VIRAL PROTEIN 21-JUL-22 8DS0 TITLE PRODUCT STRUCTURE OF SARS-COV-2 MPRO C145A MUTANT IN COMPLEX WITH TITLE 2 NSP14-NSP15 (C14) CUT SITE SEQUENCE (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, SARS-COV-2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,M.PAETZEL,N.C.J.STRYNADKA REVDAT 2 18-OCT-23 8DS0 1 REMARK REVDAT 1 28-SEP-22 8DS0 0 JRNL AUTH J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,F.GENTILE,A.T.TON, JRNL AUTH 2 M.NG,A.CHERKASOV,N.C.J.STRYNADKA,M.PAETZEL JRNL TITL X-RAY CRYSTALLOGRAPHIC CHARACTERIZATION OF THE SARS-COV-2 JRNL TITL 2 MAIN PROTEASE POLYPROTEIN CLEAVAGE SITES ESSENTIAL FOR VIRAL JRNL TITL 3 PROCESSING AND MATURATION. JRNL REF NAT COMMUN V. 13 5196 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36057636 JRNL DOI 10.1038/S41467-022-32854-4 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0800 - 4.7400 1.00 2570 152 0.1412 0.1650 REMARK 3 2 4.7300 - 3.7600 1.00 2544 137 0.1443 0.1936 REMARK 3 3 3.7600 - 3.2900 1.00 2535 142 0.1900 0.2483 REMARK 3 4 3.2900 - 2.9900 1.00 2569 116 0.2063 0.2817 REMARK 3 5 2.9900 - 2.7700 1.00 2508 145 0.2335 0.3331 REMARK 3 6 2.7700 - 2.6100 1.00 2537 145 0.2435 0.3147 REMARK 3 7 2.6100 - 2.4800 1.00 2534 135 0.2583 0.3528 REMARK 3 8 2.4800 - 2.3700 1.00 2507 136 0.2795 0.3876 REMARK 3 9 2.3700 - 2.2800 1.00 2527 140 0.2866 0.3450 REMARK 3 10 2.2800 - 2.2000 1.00 2514 140 0.3209 0.3786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8662 43.0032 5.0247 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.2725 REMARK 3 T33: 0.4842 T12: -0.0173 REMARK 3 T13: 0.0217 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 2.1581 L22: 0.9830 REMARK 3 L33: 2.3895 L12: -0.8960 REMARK 3 L13: -1.2308 L23: 0.4204 REMARK 3 S TENSOR REMARK 3 S11: -0.2488 S12: 0.2451 S13: -0.7855 REMARK 3 S21: 0.0325 S22: -0.0693 S23: 0.1248 REMARK 3 S31: 0.3128 S32: 0.1084 S33: 0.3425 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0627 38.4922 -2.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.3524 T22: 0.4506 REMARK 3 T33: 0.5416 T12: 0.0463 REMARK 3 T13: 0.0156 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 6.4634 L22: 5.0481 REMARK 3 L33: 3.9803 L12: 0.2619 REMARK 3 L13: -0.7497 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.3707 S13: -0.9795 REMARK 3 S21: -0.1583 S22: -0.1836 S23: -0.7700 REMARK 3 S31: 0.3583 S32: 0.7657 S33: 0.1636 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1085 51.6217 2.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.2780 REMARK 3 T33: 0.2446 T12: 0.0123 REMARK 3 T13: -0.0021 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.1904 L22: 3.2413 REMARK 3 L33: 4.9430 L12: -0.2981 REMARK 3 L13: -0.0303 L23: 0.6557 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.3131 S13: -0.3941 REMARK 3 S21: -0.0967 S22: -0.0818 S23: 0.2635 REMARK 3 S31: 0.0400 S32: -0.1176 S33: 0.0252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6700 63.5150 1.0973 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.2988 REMARK 3 T33: 0.3391 T12: -0.0113 REMARK 3 T13: -0.0664 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 4.6602 L22: 1.9660 REMARK 3 L33: 2.6176 L12: -1.3190 REMARK 3 L13: -2.5137 L23: 0.4543 REMARK 3 S TENSOR REMARK 3 S11: 0.3732 S12: 0.5848 S13: 0.6583 REMARK 3 S21: -0.0834 S22: -0.1903 S23: -0.2652 REMARK 3 S31: -0.3101 S32: -0.0079 S33: -0.1241 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4722 71.9941 1.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.3359 REMARK 3 T33: 0.4619 T12: 0.0498 REMARK 3 T13: -0.0038 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 9.0486 L22: 4.3415 REMARK 3 L33: 7.9273 L12: -0.6899 REMARK 3 L13: 0.2998 L23: -3.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.4508 S12: 0.5076 S13: 0.7211 REMARK 3 S21: -0.0722 S22: -0.1430 S23: 0.4360 REMARK 3 S31: -0.4706 S32: 0.0693 S33: -0.3269 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2755 67.0897 8.3356 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.2866 REMARK 3 T33: 0.3543 T12: 0.0507 REMARK 3 T13: 0.0420 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 8.8511 L22: 1.6158 REMARK 3 L33: 2.8586 L12: 3.6463 REMARK 3 L13: 0.4694 L23: -0.4859 REMARK 3 S TENSOR REMARK 3 S11: 0.1642 S12: -0.2609 S13: 0.2678 REMARK 3 S21: 0.1985 S22: -0.1285 S23: 0.2491 REMARK 3 S31: -0.1603 S32: 0.0591 S33: -0.0311 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3817 41.0756 22.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.4197 REMARK 3 T33: 0.5628 T12: 0.0112 REMARK 3 T13: 0.0934 T23: 0.0981 REMARK 3 L TENSOR REMARK 3 L11: 2.5825 L22: 2.8585 REMARK 3 L33: 3.0619 L12: 1.3330 REMARK 3 L13: -0.6193 L23: -0.4853 REMARK 3 S TENSOR REMARK 3 S11: -0.4992 S12: -0.0375 S13: -0.5653 REMARK 3 S21: -0.1083 S22: 0.3624 S23: 0.3567 REMARK 3 S31: 0.5838 S32: -0.5905 S33: 0.2043 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1236 40.2518 24.5417 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.4591 REMARK 3 T33: 0.4442 T12: 0.0384 REMARK 3 T13: 0.1104 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 2.4005 L22: 4.3000 REMARK 3 L33: 3.0643 L12: 1.0632 REMARK 3 L13: 0.1388 L23: 0.1072 REMARK 3 S TENSOR REMARK 3 S11: -0.1161 S12: -0.1276 S13: -0.4922 REMARK 3 S21: 0.1101 S22: 0.0696 S23: 0.0271 REMARK 3 S31: 0.4100 S32: -0.2296 S33: 0.0452 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0381 54.0081 29.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.4416 REMARK 3 T33: 0.2240 T12: 0.0954 REMARK 3 T13: 0.0175 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 5.1909 L22: 2.6897 REMARK 3 L33: 3.0193 L12: 2.5383 REMARK 3 L13: -0.2760 L23: 0.1096 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: -0.3629 S13: -0.3258 REMARK 3 S21: 0.2098 S22: 0.0135 S23: 0.0534 REMARK 3 S31: 0.0155 S32: -0.1807 S33: 0.0904 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7524 67.5912 33.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.6159 T22: 0.8460 REMARK 3 T33: 0.3903 T12: -0.0573 REMARK 3 T13: -0.1887 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.9055 L22: 3.6405 REMARK 3 L33: 5.7616 L12: 1.0795 REMARK 3 L13: 1.6903 L23: 0.4785 REMARK 3 S TENSOR REMARK 3 S11: -0.4531 S12: -0.9065 S13: 0.2245 REMARK 3 S21: 0.2221 S22: -0.1174 S23: -0.2972 REMARK 3 S31: -1.1010 S32: 0.4396 S33: 0.5187 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9680 69.3932 21.9894 REMARK 3 T TENSOR REMARK 3 T11: 0.4679 T22: 0.5727 REMARK 3 T33: 0.3340 T12: -0.0382 REMARK 3 T13: -0.1855 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 6.0943 L22: 4.7040 REMARK 3 L33: 5.2143 L12: -0.8010 REMARK 3 L13: -1.8300 L23: -2.6127 REMARK 3 S TENSOR REMARK 3 S11: -0.3398 S12: 0.7655 S13: 0.2688 REMARK 3 S21: 0.1520 S22: -0.3283 S23: -0.4935 REMARK 3 S31: -0.5642 S32: -0.1297 S33: 0.6299 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6215 52.9388 23.0122 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.6899 REMARK 3 T33: 0.4087 T12: 0.0109 REMARK 3 T13: 0.0054 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 8.6174 L22: 4.9136 REMARK 3 L33: 1.3870 L12: -6.4468 REMARK 3 L13: 3.4311 L23: -2.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.6132 S12: 0.2981 S13: -0.2121 REMARK 3 S21: 0.1232 S22: 0.4144 S23: 0.3798 REMARK 3 S31: -0.0954 S32: -0.0101 S33: 0.2105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 2.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MIB BUFFER (PH 6.0), 25% PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.74750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 THR B 45 OG1 CG2 REMARK 470 SER B 46 OG REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 MET B 49 CG SD CE REMARK 470 LEU B 50 CG CD1 CD2 REMARK 470 ILE B 59 CG1 CG2 CD1 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 64 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 232 CG CD1 CD2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -123.41 52.77 REMARK 500 ASN A 51 63.19 37.65 REMARK 500 ASN A 84 -117.43 50.09 REMARK 500 TYR A 154 -117.66 53.86 REMARK 500 ARG A 222 0.75 -68.49 REMARK 500 THR A 301 168.82 90.60 REMARK 500 ASP B 33 -120.95 47.42 REMARK 500 LEU B 50 -67.61 139.27 REMARK 500 ASN B 51 107.64 -51.35 REMARK 500 ASN B 84 -131.90 48.14 REMARK 500 ASN B 95 109.31 -56.81 REMARK 500 TYR B 154 -110.53 71.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 442 DISTANCE = 6.20 ANGSTROMS DBREF 8DS0 A 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 DBREF 8DS0 B 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 SEQADV 8DS0 ALA A 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 8DS0 THR A 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 PHE A 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 THR A 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 ARG A 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 LEU A 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 GLN A 306 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 ALA B 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 8DS0 THR B 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 PHE B 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 THR B 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 ARG B 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 LEU B 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS0 GLN B 306 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS THR PHE THR ARG LEU GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS THR PHE THR ARG LEU GLN HET PEG A 401 17 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *115(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 LYS A 61 HIS A 64 5 4 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 THR A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 ASN B 53 LYS B 61 1 9 HELIX 14 AB5 ILE B 200 GLY B 215 1 16 HELIX 15 AB6 THR B 226 LYS B 236 1 11 HELIX 16 AB7 THR B 243 LEU B 250 1 8 HELIX 17 AB8 LEU B 250 GLY B 258 1 9 HELIX 18 AB9 ALA B 260 GLY B 275 1 16 HELIX 19 AC1 THR B 292 ARG B 298 1 7 SHEET 1 AA1 7 GLN A 74 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 GLN A 69 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N GLY A 149 O TYR A 161 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O THR A 175 N MET A 162 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N GLN B 19 O GLN B 69 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O THR B 175 N MET B 162 CRYST1 49.120 105.495 53.317 90.00 104.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020358 0.000000 0.005087 0.00000 SCALE2 0.000000 0.009479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019332 0.00000