HEADER VIRAL PROTEIN 21-JUL-22 8DS2 TITLE STRUCTURE OF SARS-COV-2 MPRO IN COMPLEX WITH THE NSP13-NSP14 (C13) CUT TITLE 2 SITE SEQUENCE (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, SARS-COV-2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,M.PAETZEL,N.C.J.STRYNADKA REVDAT 4 15-NOV-23 8DS2 1 REMARK REVDAT 3 18-OCT-23 8DS2 1 REMARK REVDAT 2 12-OCT-22 8DS2 1 JRNL REVDAT 1 28-SEP-22 8DS2 0 JRNL AUTH J.LEE,C.KENWARD,L.J.WORRALL,M.VUCKOVIC,F.GENTILE,A.T.TON, JRNL AUTH 2 M.NG,A.CHERKASOV,N.C.J.STRYNADKA,M.PAETZEL JRNL TITL X-RAY CRYSTALLOGRAPHIC CHARACTERIZATION OF THE SARS-COV-2 JRNL TITL 2 MAIN PROTEASE POLYPROTEIN CLEAVAGE SITES ESSENTIAL FOR VIRAL JRNL TITL 3 PROCESSING AND MATURATION. JRNL REF NAT COMMUN V. 13 5196 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36057636 JRNL DOI 10.1038/S41467-022-32854-4 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 69749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6400 - 4.6800 0.99 2787 128 0.1628 0.1762 REMARK 3 2 4.6800 - 3.7100 0.99 2714 156 0.1276 0.1424 REMARK 3 3 3.7100 - 3.2400 0.99 2706 130 0.1369 0.1616 REMARK 3 4 3.2400 - 2.9500 0.98 2715 143 0.1413 0.1803 REMARK 3 5 2.9500 - 2.7400 0.98 2703 122 0.1471 0.1770 REMARK 3 6 2.7400 - 2.5700 0.98 2657 152 0.1551 0.1841 REMARK 3 7 2.5700 - 2.4500 0.98 2708 122 0.1569 0.2314 REMARK 3 8 2.4500 - 2.3400 0.98 2661 153 0.1555 0.1987 REMARK 3 9 2.3400 - 2.2500 0.98 2663 155 0.1517 0.1962 REMARK 3 10 2.2500 - 2.1700 0.97 2654 138 0.1531 0.2156 REMARK 3 11 2.1700 - 2.1000 0.97 2634 159 0.1524 0.1911 REMARK 3 12 2.1000 - 2.0400 0.97 2619 147 0.1487 0.1734 REMARK 3 13 2.0400 - 1.9900 0.97 2687 134 0.1451 0.1535 REMARK 3 14 1.9900 - 1.9400 0.97 2594 150 0.1478 0.1874 REMARK 3 15 1.9400 - 1.9000 0.96 2653 132 0.1546 0.1749 REMARK 3 16 1.9000 - 1.8600 0.96 2667 129 0.1661 0.2206 REMARK 3 17 1.8600 - 1.8200 0.96 2568 144 0.1823 0.2373 REMARK 3 18 1.8200 - 1.7900 0.96 2651 152 0.2033 0.2684 REMARK 3 19 1.7900 - 1.7500 0.96 2578 124 0.2146 0.3117 REMARK 3 20 1.7500 - 1.7200 0.96 2682 144 0.1943 0.2285 REMARK 3 21 1.7200 - 1.7000 0.95 2536 137 0.1905 0.2227 REMARK 3 22 1.7000 - 1.6700 0.95 2641 135 0.2011 0.2213 REMARK 3 23 1.6700 - 1.6500 0.95 2582 128 0.2105 0.2600 REMARK 3 24 1.6500 - 1.6200 0.95 2626 141 0.2246 0.3050 REMARK 3 25 1.6200 - 1.6000 0.95 2568 140 0.2408 0.2800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2016 41.0150 20.6269 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1507 REMARK 3 T33: 0.1014 T12: 0.0001 REMARK 3 T13: -0.0133 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.6981 L22: 2.3154 REMARK 3 L33: 1.0228 L12: 2.8989 REMARK 3 L13: -1.8009 L23: -0.8689 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: 0.1254 S13: -0.0572 REMARK 3 S21: -0.0585 S22: 0.1156 S23: 0.0131 REMARK 3 S31: 0.0918 S32: -0.0523 S33: 0.0238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6260 42.0846 32.5413 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2948 REMARK 3 T33: 0.3566 T12: 0.0252 REMARK 3 T13: 0.0376 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.2606 L22: 2.5620 REMARK 3 L33: 8.7549 L12: 2.8424 REMARK 3 L13: -2.1119 L23: -1.4399 REMARK 3 S TENSOR REMARK 3 S11: -0.2720 S12: 0.0142 S13: -0.0776 REMARK 3 S21: -0.0096 S22: 0.0372 S23: 0.5981 REMARK 3 S31: 0.1848 S32: -0.0951 S33: 0.1738 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4887 29.9268 22.7291 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.1799 REMARK 3 T33: 0.2396 T12: -0.0412 REMARK 3 T13: -0.0229 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 5.5541 L22: 6.2279 REMARK 3 L33: 7.7899 L12: 0.2612 REMARK 3 L13: -0.6045 L23: 2.1165 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: 0.5183 S13: -0.3154 REMARK 3 S21: -0.3469 S22: 0.1096 S23: 0.3176 REMARK 3 S31: 0.1624 S32: -0.5195 S33: -0.0300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6823 44.6655 24.2708 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1626 REMARK 3 T33: 0.1479 T12: 0.0045 REMARK 3 T13: 0.0034 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.2516 L22: 2.5766 REMARK 3 L33: 1.0727 L12: 0.9315 REMARK 3 L13: -0.2760 L23: 0.1156 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: 0.0145 S13: -0.1474 REMARK 3 S21: -0.0074 S22: 0.0778 S23: -0.1270 REMARK 3 S31: 0.0573 S32: 0.0310 S33: -0.0169 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1008 54.3910 29.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1608 REMARK 3 T33: 0.1047 T12: 0.0164 REMARK 3 T13: -0.0113 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.0941 L22: 1.1018 REMARK 3 L33: 0.4435 L12: 1.1961 REMARK 3 L13: 0.0392 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0699 S13: 0.1404 REMARK 3 S21: 0.0309 S22: -0.0146 S23: 0.1079 REMARK 3 S31: -0.0104 S32: 0.0011 S33: 0.0173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3708 67.0026 30.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1752 REMARK 3 T33: 0.1778 T12: -0.0297 REMARK 3 T13: -0.0298 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.8057 L22: 1.2571 REMARK 3 L33: 2.7899 L12: -0.9368 REMARK 3 L13: -0.5523 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.1369 S13: 0.3717 REMARK 3 S21: -0.0150 S22: -0.0114 S23: -0.0956 REMARK 3 S31: -0.2768 S32: 0.0711 S33: 0.0195 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5346 46.2092 1.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1426 REMARK 3 T33: 0.1474 T12: -0.0046 REMARK 3 T13: -0.0089 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9021 L22: 1.3414 REMARK 3 L33: 1.1264 L12: -0.3195 REMARK 3 L13: -0.4229 L23: 0.3628 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.0040 S13: -0.0847 REMARK 3 S21: -0.0379 S22: 0.0390 S23: -0.0779 REMARK 3 S31: 0.1048 S32: 0.0604 S33: 0.0215 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4275 69.6150 4.3341 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1115 REMARK 3 T33: 0.1402 T12: 0.0030 REMARK 3 T13: -0.0160 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.5744 L22: 0.5185 REMARK 3 L33: 0.5954 L12: -0.6798 REMARK 3 L13: -0.4087 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: 0.0890 S13: 0.1539 REMARK 3 S21: -0.0017 S22: -0.0201 S23: -0.0262 REMARK 3 S31: -0.1070 S32: -0.1004 S33: -0.0512 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84342 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SUCCINIC ACID (PH 7.0), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.72000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 33 -131.80 50.23 REMARK 500 ASN B 51 65.75 -165.79 REMARK 500 ASN B 84 -122.88 50.10 REMARK 500 TYR B 154 -87.87 44.25 REMARK 500 PRO B 184 44.47 -82.67 REMARK 500 GLN B 192 77.81 -156.98 REMARK 500 ASP A 33 -129.56 51.68 REMARK 500 ASN A 51 68.48 -168.28 REMARK 500 ASN A 84 -123.20 51.12 REMARK 500 TYR A 154 -119.34 61.30 REMARK 500 PRO A 184 43.07 -87.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 221 O REMARK 620 2 ASN A 221 OD1 76.7 REMARK 620 3 PHE A 223 O 112.9 94.2 REMARK 620 4 ASP A 263 O 146.8 125.6 91.4 REMARK 620 5 ASP A 263 OD1 87.2 163.3 88.1 70.8 REMARK 620 6 SER A 267 OG 86.4 78.8 157.6 76.1 104.8 REMARK 620 N 1 2 3 4 5 DBREF 8DS2 B 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 DBREF 8DS2 A 1 300 UNP P0DTD1 R1AB_SARS2 3264 3563 SEQADV 8DS2 ASN B 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 VAL B 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 ALA B 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 THR B 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 LEU B 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 GLN B 306 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 ASN A 301 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 VAL A 302 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 ALA A 303 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 THR A 304 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 LEU A 305 UNP P0DTD1 EXPRESSION TAG SEQADV 8DS2 GLN A 306 UNP P0DTD1 EXPRESSION TAG SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CSO GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS ASN VAL ALA THR LEU GLN SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CSO GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS ASN VAL ALA THR LEU GLN MODRES 8DS2 CSO B 145 CYS MODIFIED RESIDUE MODRES 8DS2 CSO A 145 CYS MODIFIED RESIDUE HET CSO B 145 7 HET CSO A 145 7 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET NA A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 GOL 11(C3 H8 O3) FORMUL 8 NA NA 1+ FORMUL 15 HOH *469(H2 O) HELIX 1 AA1 SER B 10 GLY B 15 1 6 HELIX 2 AA2 HIS B 41 CYS B 44 5 4 HELIX 3 AA3 THR B 45 ASN B 51 1 7 HELIX 4 AA4 ASN B 53 ARG B 60 1 8 HELIX 5 AA5 SER B 62 HIS B 64 5 3 HELIX 6 AA6 ILE B 200 ASN B 214 1 15 HELIX 7 AA7 THR B 226 TYR B 237 1 12 HELIX 8 AA8 THR B 243 LEU B 250 1 8 HELIX 9 AA9 LEU B 250 GLY B 258 1 9 HELIX 10 AB1 ALA B 260 GLY B 275 1 16 HELIX 11 AB2 THR B 292 CYS B 300 1 9 HELIX 12 AB3 SER A 10 GLY A 15 1 6 HELIX 13 AB4 HIS A 41 CYS A 44 5 4 HELIX 14 AB5 THR A 45 ASN A 51 1 7 HELIX 15 AB6 ASN A 53 LYS A 61 1 9 HELIX 16 AB7 SER A 62 HIS A 64 5 3 HELIX 17 AB8 ILE A 200 ASN A 214 1 15 HELIX 18 AB9 THR A 226 TYR A 237 1 12 HELIX 19 AC1 THR A 243 LEU A 250 1 8 HELIX 20 AC2 LEU A 250 GLY A 258 1 9 HELIX 21 AC3 ALA A 260 GLY A 275 1 16 HELIX 22 AC4 THR A 292 CYS A 300 1 9 SHEET 1 AA1 7 VAL B 73 LEU B 75 0 SHEET 2 AA1 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA1 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA1 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA1 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA1 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA1 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA2 5 LYS B 100 PHE B 103 0 SHEET 2 AA2 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA2 5 VAL B 148 ASP B 153 -1 N ASP B 153 O CYS B 156 SHEET 4 AA2 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA2 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA3 3 LYS B 100 PHE B 103 0 SHEET 2 AA3 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA3 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 SHEET 1 AA4 7 VAL A 73 LEU A 75 0 SHEET 2 AA4 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA4 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA4 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA4 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA4 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA4 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA5 5 TYR A 101 PHE A 103 0 SHEET 2 AA5 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA5 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA5 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA5 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA6 3 TYR A 101 PHE A 103 0 SHEET 2 AA6 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA6 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 LINK C SER B 144 N CSO B 145 1555 1555 1.33 LINK C CSO B 145 N GLY B 146 1555 1555 1.33 LINK C SER A 144 N CSO A 145 1555 1555 1.33 LINK C CSO A 145 N GLY A 146 1555 1555 1.33 LINK O ASN A 221 NA NA A 401 1555 1555 2.37 LINK OD1 ASN A 221 NA NA A 401 1555 1555 2.38 LINK O PHE A 223 NA NA A 401 1555 1555 2.41 LINK O ASP A 263 NA NA A 401 1555 1555 2.53 LINK OD1 ASP A 263 NA NA A 401 1555 1555 2.30 LINK OG SER A 267 NA NA A 401 1555 1555 2.95 CRYST1 48.996 107.440 54.388 90.00 103.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020410 0.000000 0.004900 0.00000 SCALE2 0.000000 0.009308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018909 0.00000