HEADER IMMUNE SYSTEM 21-JUL-22 8DS5 TITLE X-RAY STRUCTURE OF THE MK5890 FAB - CD27 ANTIBODY-ANTIGEN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD27 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD27L RECEPTOR,T-CELL ACTIVATION ANTIGEN CD27,T14,TUMOR COMPND 5 NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MK-5890 FAB LIGHT CHAIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MK-5890 FAB HEAVY CHAIN; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD27, TNFRSF7; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: EXPI293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: EXPI293; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: EXPI293 KEYWDS COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.O.FISCHMANN REVDAT 3 30-OCT-24 8DS5 1 REMARK REVDAT 2 18-OCT-23 8DS5 1 REMARK REVDAT 1 28-SEP-22 8DS5 0 JRNL AUTH L.GUELEN,T.O.FISCHMANN,J.WONG,S.MAUZE,M.GUADAGNOLI,N.BABALA, JRNL AUTH 2 J.WAGENAARS,V.JUAN,D.ROSEN,W.PROSISE,M.HABRAKEN,I.LODEWIJKS, JRNL AUTH 3 D.GU,J.STAMMEN-VOGELZANGS,Y.YU,J.BAKER,D.LUTJE HULSIK, JRNL AUTH 4 L.DRIESSEN-ENGELS,D.MALASHOCK,J.KREIJTZ,A.BERTENS, JRNL AUTH 5 E.DE VRIES,A.BOVENS,A.BRAMER,Y.ZHANG,R.WNEK,S.TROTH, JRNL AUTH 6 E.CHARTASH,K.DOBRENKOV,S.SADEKOVA,A.VAN ELSAS,J.K.CHEUNG, JRNL AUTH 7 L.FAYADAT-DILMAN,J.BORST,A.M.BEEBE,H.VAN EENENNAAM JRNL TITL PRECLINICAL CHARACTERIZATION AND CLINICAL TRANSLATION OF JRNL TITL 2 PHARMACODYNAMIC MARKERS FOR MK-5890: A HUMAN CD27 ACTIVATING JRNL TITL 3 ANTIBODY FOR CANCER IMMUNOTHERAPY. JRNL REF J IMMUNOTHER CANCER V. 10 2022 JRNL REFN ESSN 2051-1426 JRNL PMID 36100308 JRNL DOI 10.1136/JITC-2022-005049 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (23-SEP-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.8 REMARK 3 NUMBER OF REFLECTIONS : 45831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 917 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2280 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 875 REMARK 3 BIN R VALUE (WORKING SET) : 0.2257 REMARK 3 BIN FREE R VALUE : 0.2759 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.06590 REMARK 3 B22 (A**2) : -3.36940 REMARK 3 B33 (A**2) : -2.69660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.185 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.265 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.154 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7969 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14319 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1678 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1266 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4127 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 539 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4691 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.4342 -54.5165 32.8770 REMARK 3 T TENSOR REMARK 3 T11: -0.0593 T22: -0.2580 REMARK 3 T33: -0.1710 T12: -0.0145 REMARK 3 T13: 0.0309 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 5.6075 L22: 5.2766 REMARK 3 L33: 2.2788 L12: -1.7897 REMARK 3 L13: 0.4447 L23: -0.4792 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: -0.0958 S13: -0.2019 REMARK 3 S21: 0.0475 S22: -0.0721 S23: -0.0535 REMARK 3 S31: 0.0292 S32: -0.0982 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.1825 -2.2848 19.1054 REMARK 3 T TENSOR REMARK 3 T11: -0.1296 T22: -0.1137 REMARK 3 T33: -0.0656 T12: -0.0817 REMARK 3 T13: -0.0859 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.2902 L22: 3.8549 REMARK 3 L33: 1.0455 L12: -0.4140 REMARK 3 L13: 0.0083 L23: -0.7396 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.2340 S13: 0.0606 REMARK 3 S21: 0.3143 S22: -0.1482 S23: -0.7978 REMARK 3 S31: -0.3114 S32: 0.3837 S33: 0.1336 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -32.6154 -11.3891 15.6993 REMARK 3 T TENSOR REMARK 3 T11: -0.0724 T22: -0.1061 REMARK 3 T33: -0.2054 T12: -0.0143 REMARK 3 T13: -0.0112 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.0999 L22: 4.5334 REMARK 3 L33: 1.8077 L12: -1.0413 REMARK 3 L13: 0.3475 L23: -1.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.1378 S13: -0.1568 REMARK 3 S21: 0.0532 S22: 0.0618 S23: 0.1307 REMARK 3 S31: -0.1192 S32: 0.0213 S33: -0.0464 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1. REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.926 REMARK 200 RESOLUTION RANGE LOW (A) : 52.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.95200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS CL PH 8.5, 40% V/V PEG400, REMARK 280 8.0MM CDCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.80100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.80100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.12300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.05250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.12300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.05250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.80100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.12300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.05250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.80100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.12300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.05250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C0100 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 122 REMARK 465 LEU A 123 REMARK 465 PRO A 124 REMARK 465 ASN A 125 REMARK 465 PRO A 126 REMARK 465 SER A 127 REMARK 465 LEU A 128 REMARK 465 THR A 129 REMARK 465 ALA A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 GLN A 134 REMARK 465 ALA A 135 REMARK 465 LEU A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 HIS A 139 REMARK 465 PRO A 140 REMARK 465 GLN A 141 REMARK 465 PRO A 142 REMARK 465 THR A 143 REMARK 465 HIS A 144 REMARK 465 LEU A 145 REMARK 465 PRO A 146 REMARK 465 TYR A 147 REMARK 465 VAL A 148 REMARK 465 SER A 149 REMARK 465 GLU A 150 REMARK 465 MET A 151 REMARK 465 LEU A 152 REMARK 465 GLU A 153 REMARK 465 ALA A 154 REMARK 465 ARG A 155 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 HIS A 159 REMARK 465 MET A 160 REMARK 465 GLN A 161 REMARK 465 THR A 162 REMARK 465 LEU A 163 REMARK 465 ALA A 164 REMARK 465 ASP A 165 REMARK 465 PHE A 166 REMARK 465 ARG A 167 REMARK 465 GLN A 168 REMARK 465 LEU A 169 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 CYS B 213 REMARK 465 LYS C 132 REMARK 465 SER C 133 REMARK 465 THR C 134 REMARK 465 SER C 135 REMARK 465 GLY C 136 REMARK 465 SER C 218 REMARK 465 CYS C 219 REMARK 465 ASP C 220 REMARK 465 LYS C 221 REMARK 465 THR C 222 REMARK 465 HIS C 223 REMARK 465 THR C 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 16.93 53.56 REMARK 500 LYS A 37 -16.05 -160.78 REMARK 500 CYS A 87 66.48 -104.65 REMARK 500 SER B 30 -72.86 -108.10 REMARK 500 THR B 50 -52.25 71.83 REMARK 500 ASN B 151 15.88 59.32 REMARK 500 ALA C 102 -175.55 74.59 REMARK 500 ASP C 147 70.68 50.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE1 REMARK 620 2 GLU A 44 OE2 51.8 REMARK 620 3 HIS A 75 NE2 90.4 77.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 80 NE2 REMARK 620 2 GLU A 82 OE1 99.5 REMARK 620 3 GLU A 103 OE1 137.2 48.3 REMARK 620 4 GLU A 103 OE2 137.0 46.0 3.0 REMARK 620 5 GLU A 116 OE1 140.3 58.9 11.0 13.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B9901 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 137 OD1 REMARK 620 2 HIS C 167 NE2 74.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C9902 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 10 OE2 REMARK 620 2 HOH C10117 O 104.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C9901 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 167 ND1 REMARK 620 2 HOH C10137 O 94.0 REMARK 620 N 1 DBREF 8DS5 A 21 177 UNP P26842 CD27_HUMAN 21 177 DBREF 8DS5 B 1 213 PDB 8DS5 8DS5 1 213 DBREF 8DS5 C 1 224 PDB 8DS5 8DS5 1 224 SEQADV 8DS5 HIS A 178 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 179 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 180 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 181 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 182 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 183 UNP P26842 EXPRESSION TAG SEQADV 8DS5 HIS A 184 UNP P26842 EXPRESSION TAG SEQRES 1 A 164 THR PRO ALA PRO LYS SER CYS PRO GLU ARG HIS TYR TRP SEQRES 2 A 164 ALA GLN GLY LYS LEU CYS CYS GLN MET CYS GLU PRO GLY SEQRES 3 A 164 THR PHE LEU VAL LYS ASP CYS ASP GLN HIS ARG LYS ALA SEQRES 4 A 164 ALA GLN CYS ASP PRO CYS ILE PRO GLY VAL SER PHE SER SEQRES 5 A 164 PRO ASP HIS HIS THR ARG PRO HIS CYS GLU SER CYS ARG SEQRES 6 A 164 HIS CYS ASN SER GLY LEU LEU VAL ARG ASN CYS THR ILE SEQRES 7 A 164 THR ALA ASN ALA GLU CYS ALA CYS ARG ASN GLY TRP GLN SEQRES 8 A 164 CYS ARG ASP LYS GLU CYS THR GLU CYS ASP PRO LEU PRO SEQRES 9 A 164 ASN PRO SER LEU THR ALA ARG SER SER GLN ALA LEU SER SEQRES 10 A 164 PRO HIS PRO GLN PRO THR HIS LEU PRO TYR VAL SER GLU SEQRES 11 A 164 MET LEU GLU ALA ARG THR ALA GLY HIS MET GLN THR LEU SEQRES 12 A 164 ALA ASP PHE ARG GLN LEU PRO ALA ARG THR LEU SER THR SEQRES 13 A 164 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 213 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 B 213 SER PRO GLY GLU ARG ALA THR LEU SER CYS SER ALA SER SEQRES 3 B 213 SER SER VAL SER TYR MET HIS TRP TYR GLN GLN LYS PRO SEQRES 4 B 213 GLY GLN ALA PRO LYS ARG TRP ILE TYR ASP THR SER LYS SEQRES 5 B 213 LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 B 213 SER GLY THR ASP TYR SER LEU THR ILE SER SER LEU GLU SEQRES 7 B 213 PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TRP ASN SEQRES 8 B 213 SER TYR PRO PHE THR PHE GLY GLN GLY THR LYS LEU GLU SEQRES 9 B 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 B 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 B 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 B 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 B 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 B 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 B 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 B 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 B 213 ASN ARG GLY GLU CYS SEQRES 1 C 224 GLU ILE GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 C 224 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 C 224 TYR THR PHE THR ASN TYR GLY MET ASN TRP VAL LYS GLN SEQRES 4 C 224 ALA PRO GLY GLN GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 C 224 THR ASN THR GLY GLU PRO THR TYR ALA GLU GLU PHE LYS SEQRES 6 C 224 GLY ARG PHE THR PHE THR LEU ASP THR SER ILE SER THR SEQRES 7 C 224 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 C 224 ALA VAL TYR TYR CYS ALA ARG GLU GLY ASP ALA MET ASP SEQRES 9 C 224 TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER ALA SEQRES 10 C 224 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 C 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 C 224 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 C 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 C 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 C 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 C 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 C 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 C 224 THR HIS THR HET CD A 201 1 HET CD A 202 1 HET CD B9901 1 HET CD B9902 1 HET 2PE B9903 28 HET CD C9901 1 HET CD C9902 1 HETNAM CD CADMIUM ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 4 CD 6(CD 2+) FORMUL 8 2PE C18 H38 O10 FORMUL 11 HOH *275(H2 O) HELIX 1 AA1 GLU B 78 PHE B 82 5 5 HELIX 2 AA2 SER B 120 SER B 126 1 7 HELIX 3 AA3 LYS B 182 LYS B 187 1 6 HELIX 4 AA4 THR C 28 TYR C 32 5 5 HELIX 5 AA5 GLU C 62 LYS C 65 5 4 HELIX 6 AA6 THR C 74 ILE C 76 5 3 HELIX 7 AA7 ARG C 87 THR C 91 5 5 HELIX 8 AA8 SER C 159 ALA C 161 5 3 HELIX 9 AA9 SER C 190 THR C 194 5 5 HELIX 10 AB1 LYS C 204 ASN C 207 5 4 SHEET 1 AA1 2 HIS A 31 ALA A 34 0 SHEET 2 AA1 2 LEU A 38 GLN A 41 -1 O LEU A 38 N ALA A 34 SHEET 1 AA2 2 THR A 47 LYS A 51 0 SHEET 2 AA2 2 GLN A 61 PRO A 64 -1 O GLN A 61 N VAL A 50 SHEET 1 AA3 2 SER A 70 PHE A 71 0 SHEET 2 AA3 2 GLU A 82 SER A 83 -1 O GLU A 82 N PHE A 71 SHEET 1 AA4 2 LEU A 91 ARG A 94 0 SHEET 2 AA4 2 GLU A 103 ALA A 105 -1 O GLU A 103 N ARG A 94 SHEET 1 AA5 2 GLN A 111 CYS A 112 0 SHEET 2 AA5 2 CYS A 120 ASP A 121 -1 O ASP A 121 N GLN A 111 SHEET 1 AA6 4 LEU B 4 SER B 7 0 SHEET 2 AA6 4 ALA B 19 ALA B 25 -1 O SER B 24 N THR B 5 SHEET 3 AA6 4 ASP B 69 ILE B 74 -1 O LEU B 72 N LEU B 21 SHEET 4 AA6 4 PHE B 61 SER B 66 -1 N SER B 62 O THR B 73 SHEET 1 AA7 6 THR B 10 LEU B 13 0 SHEET 2 AA7 6 THR B 101 ILE B 105 1 O LYS B 102 N LEU B 11 SHEET 3 AA7 6 VAL B 84 GLN B 89 -1 N TYR B 85 O THR B 101 SHEET 4 AA7 6 HIS B 33 GLN B 37 -1 N GLN B 37 O VAL B 84 SHEET 5 AA7 6 LYS B 44 TYR B 48 -1 O ILE B 47 N TRP B 34 SHEET 6 AA7 6 LYS B 52 LEU B 53 -1 O LYS B 52 N TYR B 48 SHEET 1 AA8 4 THR B 10 LEU B 13 0 SHEET 2 AA8 4 THR B 101 ILE B 105 1 O LYS B 102 N LEU B 11 SHEET 3 AA8 4 VAL B 84 GLN B 89 -1 N TYR B 85 O THR B 101 SHEET 4 AA8 4 THR B 96 PHE B 97 -1 O THR B 96 N GLN B 89 SHEET 1 AA9 4 SER B 113 PHE B 117 0 SHEET 2 AA9 4 THR B 128 PHE B 138 -1 O LEU B 134 N PHE B 115 SHEET 3 AA9 4 TYR B 172 SER B 181 -1 O LEU B 174 N LEU B 135 SHEET 4 AA9 4 SER B 158 VAL B 162 -1 N SER B 161 O SER B 175 SHEET 1 AB1 3 LYS B 144 VAL B 149 0 SHEET 2 AB1 3 VAL B 190 THR B 196 -1 O GLU B 194 N GLN B 146 SHEET 3 AB1 3 VAL B 204 ASN B 209 -1 O VAL B 204 N VAL B 195 SHEET 1 AB2 4 GLN C 3 GLN C 6 0 SHEET 2 AB2 4 VAL C 18 SER C 25 -1 O LYS C 23 N VAL C 5 SHEET 3 AB2 4 THR C 78 LEU C 83 -1 O MET C 81 N VAL C 20 SHEET 4 AB2 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLU C 82 SHEET 1 AB3 6 GLU C 10 LYS C 12 0 SHEET 2 AB3 6 THR C 110 VAL C 114 1 O THR C 113 N GLU C 10 SHEET 3 AB3 6 ALA C 92 GLU C 99 -1 N ALA C 92 O VAL C 112 SHEET 4 AB3 6 GLY C 33 GLN C 39 -1 N ASN C 35 O ALA C 97 SHEET 5 AB3 6 LYS C 46 ILE C 51 -1 O LYS C 46 N LYS C 38 SHEET 6 AB3 6 PRO C 58 TYR C 60 -1 O THR C 59 N TRP C 50 SHEET 1 AB4 4 GLU C 10 LYS C 12 0 SHEET 2 AB4 4 THR C 110 VAL C 114 1 O THR C 113 N GLU C 10 SHEET 3 AB4 4 ALA C 92 GLU C 99 -1 N ALA C 92 O VAL C 112 SHEET 4 AB4 4 MET C 103 TRP C 106 -1 O TYR C 105 N ARG C 98 SHEET 1 AB5 4 SER C 123 LEU C 127 0 SHEET 2 AB5 4 THR C 138 TYR C 148 -1 O LEU C 144 N PHE C 125 SHEET 3 AB5 4 TYR C 179 PRO C 188 -1 O LEU C 181 N VAL C 145 SHEET 4 AB5 4 VAL C 166 THR C 168 -1 N HIS C 167 O VAL C 184 SHEET 1 AB6 4 SER C 123 LEU C 127 0 SHEET 2 AB6 4 THR C 138 TYR C 148 -1 O LEU C 144 N PHE C 125 SHEET 3 AB6 4 TYR C 179 PRO C 188 -1 O LEU C 181 N VAL C 145 SHEET 4 AB6 4 VAL C 172 LEU C 173 -1 N VAL C 172 O SER C 180 SHEET 1 AB7 3 THR C 154 TRP C 157 0 SHEET 2 AB7 3 ILE C 198 HIS C 203 -1 O ASN C 200 N SER C 156 SHEET 3 AB7 3 THR C 208 LYS C 213 -1 O VAL C 210 N VAL C 201 SSBOND 1 CYS A 27 CYS A 39 1555 1555 2.05 SSBOND 2 CYS A 40 CYS A 53 1555 1555 2.04 SSBOND 3 CYS A 43 CYS A 62 1555 1555 2.04 SSBOND 4 CYS A 65 CYS A 81 1555 1555 2.05 SSBOND 5 CYS A 84 CYS A 96 1555 1555 2.02 SSBOND 6 CYS A 87 CYS A 104 1555 1555 2.03 SSBOND 7 CYS A 106 CYS A 120 1555 1555 2.04 SSBOND 8 CYS A 112 CYS A 117 1555 1555 2.05 SSBOND 9 CYS B 23 CYS B 87 1555 1555 2.06 SSBOND 10 CYS B 133 CYS B 193 1555 1555 2.02 SSBOND 11 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 12 CYS C 143 CYS C 199 1555 1555 2.03 LINK OE1 GLU A 44 CD CD A 201 1555 1555 2.37 LINK OE2 GLU A 44 CD CD A 201 1555 1555 2.65 LINK NE2 HIS A 75 CD CD A 201 1555 1555 2.34 LINK NE2 HIS A 80 CD CD A 202 1555 1555 2.36 LINK OE1 GLU A 82 CD CD A 202 1555 1555 2.21 LINK OE1 GLU A 103 CD CD A 202 1555 3555 2.61 LINK OE2 GLU A 103 CD CD A 202 1555 3555 2.36 LINK OE1 GLU A 116 CD CD A 202 1555 3555 2.32 LINK OD1 ASN B 137 CD CD B9901 1555 1555 2.56 LINK NE2 HIS B 188 CD CD B9902 1555 1555 2.31 LINK CD CD B9901 NE2 HIS C 167 1555 1555 2.60 LINK OE2 GLU C 10 CD CD C9902 1555 1555 2.32 LINK ND1 HIS C 167 CD CD C9901 1555 1555 2.52 LINK CD CD C9901 O HOH C0137 1555 1555 2.44 LINK CD CD C9902 O HOH C0117 1555 1555 2.69 CISPEP 1 SER B 7 PRO B 8 0 -7.47 CISPEP 2 TYR B 93 PRO B 94 0 -2.34 CISPEP 3 TYR B 139 PRO B 140 0 1.91 CISPEP 4 PHE C 149 PRO C 150 0 -5.75 CISPEP 5 GLU C 151 PRO C 152 0 1.46 CRYST1 114.246 126.105 131.602 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007599 0.00000