HEADER VIRAL PROTEIN 22-JUL-22 8DSB TITLE LAMBDA BACTERIOPHAGE ORF63 COMPND MOL_ID: 1; COMPND 2 MOLECULE: XIS (EXCISION72); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORF63; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMBDAVIRUS LAMBDA; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE LAMBDA; SOURCE 4 ORGANISM_TAXID: 10710; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PD441-NH KEYWDS BACTERIOPHAGE, LYTIC DEVELOPMENT, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.W.DONALDSON REVDAT 2 01-MAY-24 8DSB 1 JRNL REVDAT 1 26-JUL-23 8DSB 0 JRNL AUTH A.DYDECKA,S.BLOCH,A.RIZVI,S.PEREZ,B.NEJMAN-FALENCZYK, JRNL AUTH 2 G.TOPKA,T.GASIOR,A.NECEL,G.WEGRZYN,L.W.DONALDSON,A.WEGRZYN JRNL TITL BAD PHAGES IN GOOD BACTERIA: ROLE OF THE MYSTERIOUS ORF63 OF JRNL TITL 2 LAMBDA AND SHIGA TOXIN-CONVERTING PHI 24 B BACTERIOPHAGES. JRNL REF FRONT MICROBIOL V. 8 1618 2017 JRNL REFN ESSN 1664-302X JRNL PMID 28890713 JRNL DOI 10.3389/FMICB.2017.01618 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, ROSETTA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), BAKER REMARK 3 (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 100 STRUCTURES CHOSEN FROM 5000 REMARK 4 REMARK 4 8DSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267287. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 5 MM TRIS, 140 MM SODIUM REMARK 210 CHLORIDE, 0.05 % W/V SODIUM REMARK 210 AZIDE, 0.8 MM [U-98% 13C; U-98% REMARK 210 15N] SAMPLE, 90% H2O/10% D2O; 5 REMARK 210 MM TRIS, 140 MM SODIUM CHLORIDE, REMARK 210 0.05 % W/V SODIUM AZIDE, 0.8 MM REMARK 210 [U-98% 13C; U-98% 15N] SAMPLE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY; 3D REMARK 210 C(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D 12C-FILTERED 13C- REMARK 210 EDITED; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 ASP A 8 REMARK 465 TYR A 9 REMARK 465 LYS A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 HIS A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 GLU A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 THR A 25 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 ALA A 71 REMARK 465 ASP A 72 REMARK 465 GLU A 73 REMARK 465 ARG A 74 REMARK 465 ASN A 75 REMARK 465 GLN A 76 REMARK 465 VAL A 77 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 MET B 107 REMARK 465 ASP B 108 REMARK 465 TYR B 109 REMARK 465 LYS B 110 REMARK 465 ASP B 111 REMARK 465 ASP B 112 REMARK 465 ASP B 113 REMARK 465 ASP B 114 REMARK 465 LYS B 115 REMARK 465 HIS B 116 REMARK 465 LYS B 117 REMARK 465 ALA B 118 REMARK 465 SER B 119 REMARK 465 SER B 120 REMARK 465 VAL B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 ARG B 124 REMARK 465 THR B 125 REMARK 465 ALA B 169 REMARK 465 GLU B 170 REMARK 465 ALA B 171 REMARK 465 ASP B 172 REMARK 465 GLU B 173 REMARK 465 ARG B 174 REMARK 465 ASN B 175 REMARK 465 GLN B 176 REMARK 465 VAL B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 18 VAL A 66 -69.98 -108.47 REMARK 500 18 VAL B 166 -69.97 -108.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 59519 RELATED DB: BMRB DBREF 8DSB A 16 77 UNP Q38267 Q38267_LAMBD 2 63 DBREF 8DSB B 116 177 UNP Q38267 Q38267_LAMBD 2 63 SEQADV 8DSB HIS A 1 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS A 2 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS A 3 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS A 4 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS A 5 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS A 6 UNP Q38267 EXPRESSION TAG SEQADV 8DSB MET A 7 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP A 8 UNP Q38267 EXPRESSION TAG SEQADV 8DSB TYR A 9 UNP Q38267 EXPRESSION TAG SEQADV 8DSB LYS A 10 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP A 11 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP A 12 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP A 13 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP A 14 UNP Q38267 EXPRESSION TAG SEQADV 8DSB LYS A 15 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 101 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 102 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 103 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 104 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 105 UNP Q38267 EXPRESSION TAG SEQADV 8DSB HIS B 106 UNP Q38267 EXPRESSION TAG SEQADV 8DSB MET B 107 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP B 108 UNP Q38267 EXPRESSION TAG SEQADV 8DSB TYR B 109 UNP Q38267 EXPRESSION TAG SEQADV 8DSB LYS B 110 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP B 111 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP B 112 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP B 113 UNP Q38267 EXPRESSION TAG SEQADV 8DSB ASP B 114 UNP Q38267 EXPRESSION TAG SEQADV 8DSB LYS B 115 UNP Q38267 EXPRESSION TAG SEQRES 1 A 77 HIS HIS HIS HIS HIS HIS MET ASP TYR LYS ASP ASP ASP SEQRES 2 A 77 ASP LYS HIS LYS ALA SER SER VAL GLU LEU ARG THR SER SEQRES 3 A 77 ILE GLU MET ALA HIS SER LEU ALA GLN ILE GLY ILE ARG SEQRES 4 A 77 PHE VAL PRO ILE PRO VAL GLU THR ASP GLU GLU PHE HIS SEQRES 5 A 77 THR LEU ALA ALA SER LEU SER GLN LYS LEU GLU MET MET SEQRES 6 A 77 VAL ALA LYS ALA GLU ALA ASP GLU ARG ASN GLN VAL SEQRES 1 B 77 HIS HIS HIS HIS HIS HIS MET ASP TYR LYS ASP ASP ASP SEQRES 2 B 77 ASP LYS HIS LYS ALA SER SER VAL GLU LEU ARG THR SER SEQRES 3 B 77 ILE GLU MET ALA HIS SER LEU ALA GLN ILE GLY ILE ARG SEQRES 4 B 77 PHE VAL PRO ILE PRO VAL GLU THR ASP GLU GLU PHE HIS SEQRES 5 B 77 THR LEU ALA ALA SER LEU SER GLN LYS LEU GLU MET MET SEQRES 6 B 77 VAL ALA LYS ALA GLU ALA ASP GLU ARG ASN GLN VAL HELIX 1 AA1 ILE A 27 ILE A 36 1 10 HELIX 2 AA2 THR A 47 ALA A 67 1 21 HELIX 3 AA3 ILE B 127 ILE B 136 1 10 HELIX 4 AA4 THR B 147 ALA B 167 1 21 SHEET 1 AA1 2 PHE A 40 PRO A 44 0 SHEET 2 AA1 2 PHE B 140 PRO B 144 -1 O ILE B 143 N VAL A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1