HEADER VIRAL PROTEIN 23-JUL-22 8DSX TITLE NMR STRUCTURE OF THE BACTERIOPHAGE LAMBDA EA22 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN EA22; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES 102-182; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMBDAVIRUS LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: EA22; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PD441-NH KEYWDS BACTERIOPHAGE, PRO-LYSOGENIC FACTOR, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.W.DONALDSON REVDAT 2 15-MAY-24 8DSX 1 REMARK REVDAT 1 26-JUL-23 8DSX 0 JRNL AUTH J.TONG,B.NEJMAN-FALEECZYK,S.BLOCH,A.WEGRZYN,G.WEGRZYN, JRNL AUTH 2 L.W.DONALDSON JRNL TITL EA22 PROTEINS FROM LAMBDA AND SHIGA TOXIN-PRODUCING JRNL TITL 2 BACTERIOPHAGES BALANCE STRUCTURAL DIVERSITY WITH FUNCTIONAL JRNL TITL 3 SIMILARITY. JRNL REF ACS OMEGA V. 5 12236 2020 JRNL REFN ESSN 2470-1343 JRNL PMID 32548406 JRNL DOI 10.1021/ACSOMEGA.0C00894 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, ROSETTA 2021.16.61629 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), BAKER REMARK 3 (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BEST 100 OF 5000 STRUCTURES THAT REMARK 3 SATISFIED RESTRAINTS REMARK 4 REMARK 4 8DSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 5 MM TRIS, 50 MM SODIUM REMARK 210 CHLORIDE, 0.05 % W/V SODIUM REMARK 210 AZIDE, 5 MM DTT, 0.6 MM [U-98% REMARK 210 13C; U-98% 15N] LAMBDA EA22, 90% REMARK 210 H2O/10% D2O; 5 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 0.05 % W/V REMARK 210 SODIUM AZIDE, 5 MM DTT, 0.4 MM 1: REMARK 210 1 12C/[U-98% 13C; U-98% 15N] REMARK 210 LAMBDA EA22, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 C(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D 12C-FILTERED 13C-EDITED REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2021.051.13.12, CCPNMR REMARK 210 ANALYSIS 2.5.2, CYANA 3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 SER A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 ASP A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 ILE A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 LYS A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 ILE A 89 REMARK 465 GLU A 90 REMARK 465 THR A 91 REMARK 465 ALA A 92 REMARK 465 VAL A 93 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 MET B 107 REMARK 465 SER B 108 REMARK 465 ASN B 109 REMARK 465 GLU B 110 REMARK 465 VAL B 111 REMARK 465 ARG B 112 REMARK 465 GLU B 113 REMARK 465 ASP B 114 REMARK 465 GLY B 115 REMARK 465 ALA B 181 REMARK 465 GLY B 182 REMARK 465 ILE B 183 REMARK 465 ARG B 184 REMARK 465 ILE B 185 REMARK 465 LYS B 186 REMARK 465 GLY B 187 REMARK 465 GLU B 188 REMARK 465 ILE B 189 REMARK 465 GLU B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 VAL B 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS B 133 H GLY B 135 1.22 REMARK 500 HG CYS A 33 H GLY A 35 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 61 -62.32 -123.62 REMARK 500 1 TYR B 161 -62.20 -123.65 REMARK 500 2 LYS A 26 -158.59 -122.67 REMARK 500 2 LYS B 126 -158.58 -122.67 REMARK 500 3 LYS A 26 -161.61 -124.43 REMARK 500 3 LYS B 126 -161.64 -124.28 REMARK 500 4 LYS A 26 -157.17 -91.22 REMARK 500 4 LYS B 126 -157.27 -91.17 REMARK 500 5 PRO A 24 64.70 -69.56 REMARK 500 5 LYS A 26 -129.58 53.74 REMARK 500 5 PRO B 124 64.77 -69.48 REMARK 500 5 LYS B 126 -129.63 53.58 REMARK 500 7 LYS A 26 -165.66 -124.33 REMARK 500 7 ARG A 59 -71.03 -124.08 REMARK 500 7 LYS B 126 -165.52 -124.32 REMARK 500 7 ARG B 159 -71.00 -124.10 REMARK 500 8 LYS A 26 -126.85 52.04 REMARK 500 8 THR A 57 -164.47 -173.81 REMARK 500 8 HIS A 58 72.72 49.60 REMARK 500 8 LYS B 126 -126.94 52.07 REMARK 500 8 THR B 157 -164.53 -173.79 REMARK 500 8 HIS B 158 72.70 49.62 REMARK 500 9 LYS A 26 -72.67 -95.61 REMARK 500 9 TYR A 60 -146.03 69.23 REMARK 500 9 LYS B 126 -72.56 -95.78 REMARK 500 9 TYR B 160 -145.98 69.04 REMARK 500 10 LYS A 26 -153.44 -111.72 REMARK 500 10 LYS B 126 -153.49 -111.72 REMARK 500 11 LYS A 26 -70.23 -93.71 REMARK 500 11 ARG A 59 -73.13 -128.05 REMARK 500 11 TYR A 60 -63.86 -133.12 REMARK 500 11 LYS B 126 -70.25 -93.74 REMARK 500 11 ARG B 159 -73.01 -128.06 REMARK 500 11 TYR B 160 -63.91 -133.16 REMARK 500 12 LYS A 26 -168.18 -127.63 REMARK 500 12 LYS B 126 -168.15 -127.58 REMARK 500 13 LYS A 26 -73.32 -97.06 REMARK 500 13 HIS A 58 29.69 -148.19 REMARK 500 13 TYR A 60 143.14 -171.54 REMARK 500 13 TYR A 61 -51.96 -145.98 REMARK 500 13 LYS B 126 -73.32 -97.07 REMARK 500 13 HIS B 158 29.62 -148.14 REMARK 500 13 TYR B 160 143.07 -171.66 REMARK 500 13 TYR B 161 -51.98 -145.92 REMARK 500 14 ARG A 59 -43.40 -149.45 REMARK 500 14 TYR A 60 -52.08 -121.33 REMARK 500 14 ARG B 159 -43.28 -149.54 REMARK 500 14 TYR B 160 -52.02 -121.40 REMARK 500 15 LYS A 26 -157.42 -121.31 REMARK 500 15 TYR A 60 -172.46 65.60 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51520 RELATED DB: BMRB DBREF 8DSX A 8 88 UNP P03756 EA22_LAMBD 102 182 DBREF 8DSX B 108 188 UNP P03756 EA22_LAMBD 102 182 SEQADV 8DSX HIS A 1 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS A 2 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS A 3 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS A 4 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS A 5 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS A 6 UNP P03756 EXPRESSION TAG SEQADV 8DSX MET A 7 UNP P03756 EXPRESSION TAG SEQADV 8DSX ILE A 89 UNP P03756 EXPRESSION TAG SEQADV 8DSX GLU A 90 UNP P03756 EXPRESSION TAG SEQADV 8DSX THR A 91 UNP P03756 EXPRESSION TAG SEQADV 8DSX ALA A 92 UNP P03756 EXPRESSION TAG SEQADV 8DSX VAL A 93 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 101 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 102 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 103 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 104 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 105 UNP P03756 EXPRESSION TAG SEQADV 8DSX HIS B 106 UNP P03756 EXPRESSION TAG SEQADV 8DSX MET B 107 UNP P03756 EXPRESSION TAG SEQADV 8DSX ILE B 189 UNP P03756 EXPRESSION TAG SEQADV 8DSX GLU B 190 UNP P03756 EXPRESSION TAG SEQADV 8DSX THR B 191 UNP P03756 EXPRESSION TAG SEQADV 8DSX ALA B 192 UNP P03756 EXPRESSION TAG SEQADV 8DSX VAL B 193 UNP P03756 EXPRESSION TAG SEQRES 1 A 93 HIS HIS HIS HIS HIS HIS MET SER ASN GLU VAL ARG GLU SEQRES 2 A 93 ASP GLY ASN GLN PHE LEU VAL VAL ARG HIS PRO GLY LYS SEQRES 3 A 93 THR PRO VAL ILE LYS HIS CYS THR GLY ASP LEU GLU GLU SEQRES 4 A 93 PHE LEU ARG GLN LEU ILE GLU GLN ASP PRO LEU VAL THR SEQRES 5 A 93 ILE ASP ILE ILE THR HIS ARG TYR TYR GLY VAL GLY GLY SEQRES 6 A 93 GLN TRP VAL GLN ASP ALA GLY GLU TYR LEU HIS MET MET SEQRES 7 A 93 SER ASP ALA GLY ILE ARG ILE LYS GLY GLU ILE GLU THR SEQRES 8 A 93 ALA VAL SEQRES 1 B 93 HIS HIS HIS HIS HIS HIS MET SER ASN GLU VAL ARG GLU SEQRES 2 B 93 ASP GLY ASN GLN PHE LEU VAL VAL ARG HIS PRO GLY LYS SEQRES 3 B 93 THR PRO VAL ILE LYS HIS CYS THR GLY ASP LEU GLU GLU SEQRES 4 B 93 PHE LEU ARG GLN LEU ILE GLU GLN ASP PRO LEU VAL THR SEQRES 5 B 93 ILE ASP ILE ILE THR HIS ARG TYR TYR GLY VAL GLY GLY SEQRES 6 B 93 GLN TRP VAL GLN ASP ALA GLY GLU TYR LEU HIS MET MET SEQRES 7 B 93 SER ASP ALA GLY ILE ARG ILE LYS GLY GLU ILE GLU THR SEQRES 8 B 93 ALA VAL HELIX 1 AA1 ASP A 36 ASP A 48 1 13 HELIX 2 AA2 ALA A 71 MET A 78 1 8 HELIX 3 AA3 ASP B 136 ASP B 148 1 13 HELIX 4 AA4 ALA B 171 MET B 178 1 8 SHEET 1 AA1 4 VAL A 29 LYS A 31 0 SHEET 2 AA1 4 PHE A 18 ARG A 22 -1 N VAL A 21 O VAL A 29 SHEET 3 AA1 4 THR A 52 HIS A 58 -1 O THR A 52 N ARG A 22 SHEET 4 AA1 4 GLN A 66 ASP A 70 -1 O TRP A 67 N THR A 57 SHEET 1 AA2 4 VAL B 129 LYS B 131 0 SHEET 2 AA2 4 PHE B 118 ARG B 122 -1 N VAL B 121 O VAL B 129 SHEET 3 AA2 4 THR B 152 HIS B 158 -1 O THR B 152 N ARG B 122 SHEET 4 AA2 4 GLN B 166 ASP B 170 -1 O TRP B 167 N THR B 157 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1