data_8DTU # _entry.id 8DTU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DTU pdb_00008dtu 10.2210/pdb8dtu/pdb WWPDB D_1000267357 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 8DTN _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DTU _pdbx_database_status.recvd_initial_deposition_date 2022-07-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yin, M.' 1 ? 'Tenglin, K.' 2 ? 'Zhai, L.' 3 ? 'Dassama, L.M.' 4 ? 'Orkin, S.H.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first e2218959120 _citation.page_last e2218959120 _citation.title 'Evolution of nanobodies specific for BCL11A.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2218959120 _citation.pdbx_database_id_PubMed 36626555 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yin, M.' 1 ? primary 'Izadi, M.' 2 ? primary 'Tenglin, K.' 3 ? primary 'Viennet, T.' 4 ? primary 'Zhai, L.' 5 0000-0003-3566-3472 primary 'Zheng, G.' 6 ? primary 'Arthanari, H.' 7 ? primary 'Dassama, L.M.K.' 8 0000-0002-0851-6373 primary 'Orkin, S.H.' 9 0000-0002-0313-152X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8DTU _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.507 _cell.length_a_esd ? _cell.length_b 57.507 _cell.length_b_esd ? _cell.length_c 157.328 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nanobody 5344N74D' 714.872 1 ? ? ? ? 2 polymer man 'Nanobody 5344N74D' 12152.926 1 ? ? ? ? 3 polymer man 'B-cell lymphoma/leukemia 11A' 3483.155 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 17 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name ;BCL-11A,B-cell CLL/lymphoma 11A,COUP-TF-interacting protein 1,Ecotropic viral integration site 9 protein homolog,EVI-9,Zinc finger protein 856, ZF6 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no QVQLVK QVQLVK B ? 2 'polypeptide(L)' no yes ;SGGGLVQAGDSLRLSCAASGSTFSGYA(MSE)GWYRQAPGKERELVAAITSSGASTYYADSVRGRFTISRDDAKNTVYLQ (MSE)NSLKPEDTAVYYCAALDEGYLDYDSWGQGTQVTVSS ; ;SGGGLVQAGDSLRLSCAASGSTFSGYAMGWYRQAPGKERELVAAITSSGASTYYADSVRGRFTISRDDAKNTVYLQMNSL KPEDTAVYYCAALDEGYLDYDSWGQGTQVTVSS ; A ? 3 'polypeptide(L)' no no VYKCEICKMPFSVYSTLEKHMKKWHSDR VYKCEICKMPFSVYSTLEKHMKKWHSDR C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 LYS n 2 1 SER n 2 2 GLY n 2 3 GLY n 2 4 GLY n 2 5 LEU n 2 6 VAL n 2 7 GLN n 2 8 ALA n 2 9 GLY n 2 10 ASP n 2 11 SER n 2 12 LEU n 2 13 ARG n 2 14 LEU n 2 15 SER n 2 16 CYS n 2 17 ALA n 2 18 ALA n 2 19 SER n 2 20 GLY n 2 21 SER n 2 22 THR n 2 23 PHE n 2 24 SER n 2 25 GLY n 2 26 TYR n 2 27 ALA n 2 28 MSE n 2 29 GLY n 2 30 TRP n 2 31 TYR n 2 32 ARG n 2 33 GLN n 2 34 ALA n 2 35 PRO n 2 36 GLY n 2 37 LYS n 2 38 GLU n 2 39 ARG n 2 40 GLU n 2 41 LEU n 2 42 VAL n 2 43 ALA n 2 44 ALA n 2 45 ILE n 2 46 THR n 2 47 SER n 2 48 SER n 2 49 GLY n 2 50 ALA n 2 51 SER n 2 52 THR n 2 53 TYR n 2 54 TYR n 2 55 ALA n 2 56 ASP n 2 57 SER n 2 58 VAL n 2 59 ARG n 2 60 GLY n 2 61 ARG n 2 62 PHE n 2 63 THR n 2 64 ILE n 2 65 SER n 2 66 ARG n 2 67 ASP n 2 68 ASP n 2 69 ALA n 2 70 LYS n 2 71 ASN n 2 72 THR n 2 73 VAL n 2 74 TYR n 2 75 LEU n 2 76 GLN n 2 77 MSE n 2 78 ASN n 2 79 SER n 2 80 LEU n 2 81 LYS n 2 82 PRO n 2 83 GLU n 2 84 ASP n 2 85 THR n 2 86 ALA n 2 87 VAL n 2 88 TYR n 2 89 TYR n 2 90 CYS n 2 91 ALA n 2 92 ALA n 2 93 LEU n 2 94 ASP n 2 95 GLU n 2 96 GLY n 2 97 TYR n 2 98 LEU n 2 99 ASP n 2 100 TYR n 2 101 ASP n 2 102 SER n 2 103 TRP n 2 104 GLY n 2 105 GLN n 2 106 GLY n 2 107 THR n 2 108 GLN n 2 109 VAL n 2 110 THR n 2 111 VAL n 2 112 SER n 2 113 SER n 3 1 VAL n 3 2 TYR n 3 3 LYS n 3 4 CYS n 3 5 GLU n 3 6 ILE n 3 7 CYS n 3 8 LYS n 3 9 MET n 3 10 PRO n 3 11 PHE n 3 12 SER n 3 13 VAL n 3 14 TYR n 3 15 SER n 3 16 THR n 3 17 LEU n 3 18 GLU n 3 19 LYS n 3 20 HIS n 3 21 MET n 3 22 LYS n 3 23 LYS n 3 24 TRP n 3 25 HIS n 3 26 SER n 3 27 ASP n 3 28 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 6 ? ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 113 ? ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 28 human ? 'BCL11A, CTIP1, EVI9, KIAA1809, ZNF856' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8DTU 8DTU ? 1 ? 1 2 PDB 8DTU 8DTU ? 2 ? 1 3 UNP BC11A_HUMAN Q9H165 ? 3 VYKCEICKMPFSVYSTLEKHMKKWHSDR 799 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DTU B 1 ? 6 ? 8DTU 1 ? 6 ? 1 6 2 2 8DTU A 1 ? 113 ? 8DTU 7 ? 119 ? 7 119 3 3 8DTU C 1 ? 28 ? Q9H165 799 ? 826 ? 799 826 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DTU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 69.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES, pH 7.5-8.2, 2.2M Li2SO4.' _exptl_crystal_grow.pdbx_pH_range 7.5-8.2 _exptl_crystal_grow.temp 281.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 54.570 _reflns.entry_id 8DTU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.447 _reflns.d_resolution_low 40.664 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10390 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.56 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 35.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.49 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.157 _reflns.pdbx_Rpim_I_all 0.02625 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.1547 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.447 _reflns_shell.d_res_low 2.535 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.77 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1011 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 36.2 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.152 _reflns_shell.pdbx_Rpim_I_all 0.3513 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.938 _reflns_shell.pdbx_CC_star 0.984 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 90.83 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.123 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DTU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.447 _refine.ls_d_res_low 40.66 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10390 _refine.ls_number_reflns_R_free 1011 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.59 _refine.ls_percent_reflns_R_free 10.07 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2639 _refine.ls_R_factor_R_free 0.2876 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2613 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.83 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.36 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.447 _refine_hist.d_res_low 40.66 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1154 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 1159 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.318 ? 1563 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 23.302 ? 417 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.057 ? 167 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 197 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.4471 2.5761 . . 140 1168 91.00 . . . . 0.3825 . . . . . . . . . . . 0.3758 'X-RAY DIFFRACTION' 2.5761 2.7375 . . 129 1218 93.00 . . . . 0.3682 . . . . . . . . . . . 0.4225 'X-RAY DIFFRACTION' 2.7375 2.9488 . . 138 1226 96.00 . . . . 0.3369 . . . . . . . . . . . 0.3637 'X-RAY DIFFRACTION' 2.9488 3.2454 . . 143 1304 98.00 . . . . 0.3172 . . . . . . . . . . . 0.3607 'X-RAY DIFFRACTION' 3.2454 3.7147 . . 147 1315 99.00 . . . . 0.2692 . . . . . . . . . . . 0.2853 'X-RAY DIFFRACTION' 3.7147 4.6791 . . 150 1346 100.00 . . . . 0.2216 . . . . . . . . . . . 0.2192 'X-RAY DIFFRACTION' 4.6791 40.66 . . 164 1456 100.00 . . . . 0.2285 . . . . . . . . . . . 0.2782 # _struct.entry_id 8DTU _struct.title 'The complex of nanobody 5344N74D with BCL11A ZF6.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DTU _struct_keywords.text 'Nanobody, BCL11A, Transcription factor, Zinc finger domain, protein degradation, gamma globin, sickle cells, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP B 56 ? ARG B 59 ? ASP A 62 ARG A 65 5 ? 4 HELX_P HELX_P2 AA2 ASP B 68 ? LYS B 70 ? ASP A 74 LYS A 76 5 ? 3 HELX_P HELX_P3 AA3 LYS B 81 ? THR B 85 ? LYS A 87 THR A 91 5 ? 5 HELX_P HELX_P4 AA4 ASP B 94 ? GLY B 96 ? ASP A 100 GLY A 102 5 ? 3 HELX_P HELX_P5 AA5 ASP B 99 ? TRP B 103 ? ASP A 105 TRP A 109 5 ? 5 HELX_P HELX_P6 AA6 THR C 16 ? SER C 26 ? THR C 814 SER C 824 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 27 C ? ? ? 1_555 B MSE 28 N ? ? A ALA 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? B MSE 28 C ? ? ? 1_555 B GLY 29 N ? ? A MSE 34 A GLY 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? B GLN 76 C ? ? ? 1_555 B MSE 77 N ? ? A GLN 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? B MSE 77 C ? ? ? 1_555 B ASN 78 N ? ? A MSE 83 A ASN 84 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? C CYS 4 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 802 C ZN 901 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc2 metalc ? ? C CYS 7 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 805 C ZN 901 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc3 metalc ? ? C HIS 20 NE2 ? ? ? 1_555 D ZN . ZN ? ? C HIS 818 C ZN 901 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc4 metalc ? ? C HIS 25 NE2 ? ? ? 1_555 D ZN . ZN ? ? C HIS 823 C ZN 901 1_555 ? ? ? ? ? ? ? 2.074 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? VAL A 5 ? GLN B 3 VAL B 5 AA1 2 LEU B 12 ? ALA B 17 ? LEU A 18 ALA A 23 AA1 3 THR B 72 ? MSE B 77 ? THR A 78 MSE A 83 AA1 4 PHE B 62 ? ASP B 67 ? PHE A 68 ASP A 73 AA2 1 LEU B 5 ? VAL B 6 ? LEU A 11 VAL A 12 AA2 2 THR B 107 ? VAL B 111 ? THR A 113 VAL A 117 AA2 3 ALA B 86 ? ALA B 92 ? ALA A 92 ALA A 98 AA2 4 MSE B 28 ? GLN B 33 ? MSE A 34 GLN A 39 AA2 5 GLU B 40 ? ILE B 45 ? GLU A 46 ILE A 51 AA2 6 THR B 52 ? TYR B 54 ? THR A 58 TYR A 60 AA3 1 TYR C 2 ? LYS C 3 ? TYR C 800 LYS C 801 AA3 2 PRO C 10 ? PHE C 11 ? PRO C 808 PHE C 809 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL B 5 O SER B 15 ? O SER A 21 AA1 2 3 N LEU B 12 ? N LEU A 18 O MSE B 77 ? O MSE A 83 AA1 3 4 O GLN B 76 ? O GLN A 82 N THR B 63 ? N THR A 69 AA2 1 2 N VAL B 6 ? N VAL A 12 O THR B 110 ? O THR A 116 AA2 2 3 O THR B 107 ? O THR A 113 N TYR B 88 ? N TYR A 94 AA2 3 4 O TYR B 89 ? O TYR A 95 N TYR B 31 ? N TYR A 37 AA2 4 5 N TRP B 30 ? N TRP A 36 O VAL B 42 ? O VAL A 48 AA2 5 6 N ALA B 44 ? N ALA A 50 O TYR B 53 ? O TYR A 59 AA3 1 2 N TYR C 2 ? N TYR C 800 O PHE C 11 ? O PHE C 809 # _atom_sites.entry_id 8DTU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017389 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017389 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006356 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN B . n A 1 2 VAL 2 2 2 VAL VAL B . n A 1 3 GLN 3 3 3 GLN GLN B . n A 1 4 LEU 4 4 4 LEU LEU B . n A 1 5 VAL 5 5 5 VAL VAL B . n A 1 6 LYS 6 6 6 LYS LYS B . n B 2 1 SER 1 7 7 SER SER A . n B 2 2 GLY 2 8 8 GLY GLY A . n B 2 3 GLY 3 9 9 GLY GLY A . n B 2 4 GLY 4 10 10 GLY GLY A . n B 2 5 LEU 5 11 11 LEU LEU A . n B 2 6 VAL 6 12 12 VAL VAL A . n B 2 7 GLN 7 13 13 GLN GLN A . n B 2 8 ALA 8 14 14 ALA ALA A . n B 2 9 GLY 9 15 15 GLY GLY A . n B 2 10 ASP 10 16 16 ASP ASP A . n B 2 11 SER 11 17 17 SER SER A . n B 2 12 LEU 12 18 18 LEU LEU A . n B 2 13 ARG 13 19 19 ARG ARG A . n B 2 14 LEU 14 20 20 LEU LEU A . n B 2 15 SER 15 21 21 SER SER A . n B 2 16 CYS 16 22 22 CYS CYS A . n B 2 17 ALA 17 23 23 ALA ALA A . n B 2 18 ALA 18 24 24 ALA ALA A . n B 2 19 SER 19 25 25 SER SER A . n B 2 20 GLY 20 26 26 GLY GLY A . n B 2 21 SER 21 27 27 SER SER A . n B 2 22 THR 22 28 28 THR THR A . n B 2 23 PHE 23 29 29 PHE PHE A . n B 2 24 SER 24 30 30 SER SER A . n B 2 25 GLY 25 31 31 GLY GLY A . n B 2 26 TYR 26 32 32 TYR TYR A . n B 2 27 ALA 27 33 33 ALA ALA A . n B 2 28 MSE 28 34 34 MSE MSE A . n B 2 29 GLY 29 35 35 GLY GLY A . n B 2 30 TRP 30 36 36 TRP TRP A . n B 2 31 TYR 31 37 37 TYR TYR A . n B 2 32 ARG 32 38 38 ARG ARG A . n B 2 33 GLN 33 39 39 GLN GLN A . n B 2 34 ALA 34 40 40 ALA ALA A . n B 2 35 PRO 35 41 41 PRO PRO A . n B 2 36 GLY 36 42 42 GLY GLY A . n B 2 37 LYS 37 43 43 LYS LYS A . n B 2 38 GLU 38 44 44 GLU GLU A . n B 2 39 ARG 39 45 45 ARG ARG A . n B 2 40 GLU 40 46 46 GLU GLU A . n B 2 41 LEU 41 47 47 LEU LEU A . n B 2 42 VAL 42 48 48 VAL VAL A . n B 2 43 ALA 43 49 49 ALA ALA A . n B 2 44 ALA 44 50 50 ALA ALA A . n B 2 45 ILE 45 51 51 ILE ILE A . n B 2 46 THR 46 52 52 THR THR A . n B 2 47 SER 47 53 53 SER SER A . n B 2 48 SER 48 54 54 SER SER A . n B 2 49 GLY 49 55 55 GLY GLY A . n B 2 50 ALA 50 56 56 ALA ALA A . n B 2 51 SER 51 57 57 SER SER A . n B 2 52 THR 52 58 58 THR THR A . n B 2 53 TYR 53 59 59 TYR TYR A . n B 2 54 TYR 54 60 60 TYR TYR A . n B 2 55 ALA 55 61 61 ALA ALA A . n B 2 56 ASP 56 62 62 ASP ASP A . n B 2 57 SER 57 63 63 SER SER A . n B 2 58 VAL 58 64 64 VAL VAL A . n B 2 59 ARG 59 65 65 ARG ARG A . n B 2 60 GLY 60 66 66 GLY GLY A . n B 2 61 ARG 61 67 67 ARG ARG A . n B 2 62 PHE 62 68 68 PHE PHE A . n B 2 63 THR 63 69 69 THR THR A . n B 2 64 ILE 64 70 70 ILE ILE A . n B 2 65 SER 65 71 71 SER SER A . n B 2 66 ARG 66 72 72 ARG ARG A . n B 2 67 ASP 67 73 73 ASP ASP A . n B 2 68 ASP 68 74 74 ASP ASP A . n B 2 69 ALA 69 75 75 ALA ALA A . n B 2 70 LYS 70 76 76 LYS LYS A . n B 2 71 ASN 71 77 77 ASN ASN A . n B 2 72 THR 72 78 78 THR THR A . n B 2 73 VAL 73 79 79 VAL VAL A . n B 2 74 TYR 74 80 80 TYR TYR A . n B 2 75 LEU 75 81 81 LEU LEU A . n B 2 76 GLN 76 82 82 GLN GLN A . n B 2 77 MSE 77 83 83 MSE MSE A . n B 2 78 ASN 78 84 84 ASN ASN A . n B 2 79 SER 79 85 85 SER SER A . n B 2 80 LEU 80 86 86 LEU LEU A . n B 2 81 LYS 81 87 87 LYS LYS A . n B 2 82 PRO 82 88 88 PRO PRO A . n B 2 83 GLU 83 89 89 GLU GLU A . n B 2 84 ASP 84 90 90 ASP ASP A . n B 2 85 THR 85 91 91 THR THR A . n B 2 86 ALA 86 92 92 ALA ALA A . n B 2 87 VAL 87 93 93 VAL VAL A . n B 2 88 TYR 88 94 94 TYR TYR A . n B 2 89 TYR 89 95 95 TYR TYR A . n B 2 90 CYS 90 96 96 CYS CYS A . n B 2 91 ALA 91 97 97 ALA ALA A . n B 2 92 ALA 92 98 98 ALA ALA A . n B 2 93 LEU 93 99 99 LEU LEU A . n B 2 94 ASP 94 100 100 ASP ASP A . n B 2 95 GLU 95 101 101 GLU GLU A . n B 2 96 GLY 96 102 102 GLY GLY A . n B 2 97 TYR 97 103 103 TYR TYR A . n B 2 98 LEU 98 104 104 LEU LEU A . n B 2 99 ASP 99 105 105 ASP ASP A . n B 2 100 TYR 100 106 106 TYR TYR A . n B 2 101 ASP 101 107 107 ASP ASP A . n B 2 102 SER 102 108 108 SER SER A . n B 2 103 TRP 103 109 109 TRP TRP A . n B 2 104 GLY 104 110 110 GLY GLY A . n B 2 105 GLN 105 111 111 GLN GLN A . n B 2 106 GLY 106 112 112 GLY GLY A . n B 2 107 THR 107 113 113 THR THR A . n B 2 108 GLN 108 114 114 GLN GLN A . n B 2 109 VAL 109 115 115 VAL VAL A . n B 2 110 THR 110 116 116 THR THR A . n B 2 111 VAL 111 117 117 VAL VAL A . n B 2 112 SER 112 118 118 SER SER A . n B 2 113 SER 113 119 119 SER SER A . n C 3 1 VAL 1 799 799 VAL VAL C . n C 3 2 TYR 2 800 800 TYR TYR C . n C 3 3 LYS 3 801 801 LYS LYS C . n C 3 4 CYS 4 802 802 CYS CYS C . n C 3 5 GLU 5 803 803 GLU GLU C . n C 3 6 ILE 6 804 804 ILE ILE C . n C 3 7 CYS 7 805 805 CYS CYS C . n C 3 8 LYS 8 806 806 LYS LYS C . n C 3 9 MET 9 807 807 MET MET C . n C 3 10 PRO 10 808 808 PRO PRO C . n C 3 11 PHE 11 809 809 PHE PHE C . n C 3 12 SER 12 810 810 SER SER C . n C 3 13 VAL 13 811 811 VAL VAL C . n C 3 14 TYR 14 812 812 TYR TYR C . n C 3 15 SER 15 813 813 SER SER C . n C 3 16 THR 16 814 814 THR THR C . n C 3 17 LEU 17 815 815 LEU LEU C . n C 3 18 GLU 18 816 816 GLU GLU C . n C 3 19 LYS 19 817 817 LYS LYS C . n C 3 20 HIS 20 818 818 HIS HIS C . n C 3 21 MET 21 819 819 MET MET C . n C 3 22 LYS 22 820 820 LYS LYS C . n C 3 23 LYS 23 821 821 LYS LYS C . n C 3 24 TRP 24 822 822 TRP TRP C . n C 3 25 HIS 25 823 823 HIS HIS C . n C 3 26 SER 26 824 824 SER SER C . n C 3 27 ASP 27 825 825 ASP ASP C . n C 3 28 ARG 28 826 826 ARG ARG C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email Stuart_Orkin@dfci.harvard.edu _pdbx_contact_author.name_first Orkin _pdbx_contact_author.name_last Stuart _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0313-152X # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 901 901 ZN ZN C . E 5 HOH 1 201 7 HOH HOH A . E 5 HOH 2 202 9 HOH HOH A . E 5 HOH 3 203 13 HOH HOH A . E 5 HOH 4 204 11 HOH HOH A . E 5 HOH 5 205 14 HOH HOH A . E 5 HOH 6 206 8 HOH HOH A . E 5 HOH 7 207 15 HOH HOH A . E 5 HOH 8 208 10 HOH HOH A . E 5 HOH 9 209 6 HOH HOH A . E 5 HOH 10 210 12 HOH HOH A . E 5 HOH 11 211 4 HOH HOH A . E 5 HOH 12 212 5 HOH HOH A . F 5 HOH 1 1001 3 HOH HOH C . F 5 HOH 2 1002 17 HOH HOH C . F 5 HOH 3 1003 16 HOH HOH C . F 5 HOH 4 1004 2 HOH HOH C . F 5 HOH 5 1005 18 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2250 ? 1 MORE -15 ? 1 'SSA (A^2)' 8000 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 4 ? C CYS 802 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 SG ? C CYS 7 ? C CYS 805 ? 1_555 102.0 ? 2 SG ? C CYS 4 ? C CYS 802 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 NE2 ? C HIS 20 ? C HIS 818 ? 1_555 104.2 ? 3 SG ? C CYS 7 ? C CYS 805 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 NE2 ? C HIS 20 ? C HIS 818 ? 1_555 86.3 ? 4 SG ? C CYS 4 ? C CYS 802 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 NE2 ? C HIS 25 ? C HIS 823 ? 1_555 129.3 ? 5 SG ? C CYS 7 ? C CYS 805 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 NE2 ? C HIS 25 ? C HIS 823 ? 1_555 116.4 ? 6 NE2 ? C HIS 20 ? C HIS 818 ? 1_555 ZN ? D ZN . ? C ZN 901 ? 1_555 NE2 ? C HIS 25 ? C HIS 823 ? 1_555 109.7 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _pdbx_entry_details.entry_id 8DTU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 22 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 SG _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 CYS _pdbx_validate_close_contact.auth_seq_id_2 96 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.72 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL B 2 ? ? -140.58 -70.09 2 1 ALA A 14 ? ? -49.91 150.34 3 1 TYR C 812 ? ? -89.24 36.72 4 1 SER C 813 ? ? -168.47 114.33 5 1 SER C 824 ? ? -103.65 -147.37 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'NMR relaxation study' ? 2 1 'gel filtration' ? #