HEADER IMMUNE SYSTEM 26-JUL-22 8DTX TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE STEM HELIX PEPTIDE IN COMPLEX TITLE 2 WITH NEUTRALIZING ANTIBODY COV89-22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COV89-22 HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COV89-22 LIGHT CHAIN; COMPND 7 CHAIN: L, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S2' STEM HELIX PEPTIDE; COMPND 11 CHAIN: I, G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 18 2; SOURCE 19 ORGANISM_TAXID: 2697049 KEYWDS SARS-COV-2, CORONAVIRUS, ANTIBODY, STEM HELIX, NEUTRALIZING ANTIBODY, KEYWDS 2 COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.H.LIN,C.C.D.LEE,I.A.WILSON REVDAT 3 25-OCT-23 8DTX 1 REMARK REVDAT 2 25-JAN-23 8DTX 1 JRNL REVDAT 1 23-NOV-22 8DTX 0 JRNL AUTH C.DACON,L.PENG,T.H.LIN,C.TUCKER,C.D.LEE,Y.CONG,L.WANG, JRNL AUTH 2 L.PURSER,A.J.R.COOPER,J.K.WILLIAMS,C.W.PYO,M.YUAN,I.KOSIK, JRNL AUTH 3 Z.HU,M.ZHAO,D.MOHAN,M.PETERSON,J.SKINNER,S.DIXIT,E.KOLLINS, JRNL AUTH 4 L.HUZELLA,D.PERRY,R.BYRUM,S.LEMBIRIK,M.MURPHY,Y.ZHANG, JRNL AUTH 5 E.S.YANG,M.CHEN,K.LEUNG,R.S.WEINBERG,A.PEGU,D.E.GERAGHTY, JRNL AUTH 6 E.DAVIDSON,B.J.DORANZ,I.DOUAGI,S.MOIR,J.W.YEWDELL, JRNL AUTH 7 C.SCHMALJOHN,P.D.CROMPTON,J.R.MASCOLA,M.R.HOLBROOK, JRNL AUTH 8 D.NEMAZEE,I.A.WILSON,J.TAN JRNL TITL RARE, CONVERGENT ANTIBODIES TARGETING THE STEM HELIX BROADLY JRNL TITL 2 NEUTRALIZE DIVERSE BETACORONAVIRUSES. JRNL REF CELL HOST MICROBE V. 31 97 2023 JRNL REFN ESSN 1934-6069 JRNL PMID 36347257 JRNL DOI 10.1016/J.CHOM.2022.10.010 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.1 REMARK 3 NUMBER OF REFLECTIONS : 99449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7100 - 4.9700 0.97 4102 229 0.1656 0.1976 REMARK 3 2 4.9700 - 3.9500 1.00 4088 261 0.1355 0.1500 REMARK 3 3 3.9500 - 3.4500 0.97 3975 210 0.1584 0.1781 REMARK 3 4 3.4500 - 3.1400 0.98 4029 245 0.1731 0.1966 REMARK 3 5 3.1300 - 2.9100 0.99 4081 203 0.1885 0.2051 REMARK 3 6 2.9100 - 2.7400 0.99 4053 209 0.1965 0.2292 REMARK 3 7 2.7400 - 2.6000 0.99 4098 197 0.2030 0.2385 REMARK 3 8 2.6000 - 2.4900 0.97 3938 194 0.2044 0.2509 REMARK 3 9 2.4900 - 2.3900 0.98 4007 210 0.2002 0.2182 REMARK 3 10 2.3900 - 2.3100 0.98 3958 222 0.1981 0.2242 REMARK 3 11 2.3100 - 2.2400 0.99 4068 204 0.1892 0.2500 REMARK 3 12 2.2400 - 2.1700 0.99 4076 208 0.1909 0.2171 REMARK 3 13 2.1700 - 2.1200 0.99 4033 202 0.1921 0.2263 REMARK 3 14 2.1200 - 2.0700 0.99 4120 196 0.1954 0.2451 REMARK 3 15 2.0700 - 2.0200 0.99 3991 207 0.1913 0.2408 REMARK 3 16 2.0200 - 1.9800 0.99 4046 200 0.1982 0.2250 REMARK 3 17 1.9800 - 1.9400 0.94 3861 182 0.2103 0.2516 REMARK 3 18 1.9400 - 1.9000 0.88 3559 173 0.2289 0.2385 REMARK 3 19 1.9000 - 1.8700 0.81 3321 174 0.2347 0.2192 REMARK 3 20 1.8700 - 1.8300 0.74 2990 149 0.2318 0.2733 REMARK 3 21 1.8300 - 1.8000 0.67 2753 181 0.2317 0.2365 REMARK 3 22 1.8000 - 1.7800 0.60 2416 145 0.2261 0.2565 REMARK 3 23 1.7800 - 1.7500 0.53 2110 111 0.2357 0.2914 REMARK 3 24 1.7500 - 1.7300 0.45 1882 99 0.2451 0.2932 REMARK 3 25 1.7300 - 1.7000 0.41 1640 91 0.2592 0.3014 REMARK 3 26 1.7000 - 1.6800 0.37 1483 70 0.2643 0.3008 REMARK 3 27 1.6800 - 1.6600 0.30 1216 65 0.2857 0.2945 REMARK 3 28 1.6600 - 1.6400 0.26 1056 59 0.3060 0.3588 REMARK 3 29 1.6400 - 1.6200 0.21 860 35 0.3500 0.4035 REMARK 3 30 1.6200 - 1.6000 0.16 667 41 0.3873 0.3977 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000267365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 17.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.93800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7SJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.6, 20% 2 REMARK 280 -PROPANOL, AND 20% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.45800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 217 REMARK 465 CYS B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR H 140 O HOH H 301 1.84 REMARK 500 OE2 GLU L 82 O HOH L 301 1.84 REMARK 500 O HOH A 463 O HOH A 479 1.88 REMARK 500 O HOH B 505 O HOH B 525 1.90 REMARK 500 O HOH B 359 O HOH B 472 1.92 REMARK 500 OG SER H 135 O HOH H 302 1.99 REMARK 500 O HOH B 330 O HOH B 388 2.00 REMARK 500 OE2 GLU L 1 O HOH L 302 2.01 REMARK 500 O HOH H 404 O HOH L 352 2.02 REMARK 500 O GLY H 138 O HOH H 303 2.02 REMARK 500 O HOH B 321 O HOH B 438 2.03 REMARK 500 O HOH A 502 O HOH B 459 2.03 REMARK 500 O HOH H 370 O HOH H 464 2.03 REMARK 500 O HOH L 420 O HOH L 454 2.07 REMARK 500 O THR B 57 O HOH B 301 2.08 REMARK 500 O HOH B 414 O HOH B 538 2.09 REMARK 500 O HOH H 481 O HOH H 483 2.11 REMARK 500 OG SER A 120 O HOH A 301 2.11 REMARK 500 OH TYR B 92 O HOH B 302 2.12 REMARK 500 O HOH H 468 O HOH H 475 2.12 REMARK 500 O HOH L 420 O HOH L 496 2.13 REMARK 500 OE2 GLU A 2 O HOH A 302 2.14 REMARK 500 O HOH A 428 O HOH B 374 2.14 REMARK 500 OE2 GLU B 126 O HOH B 303 2.15 REMARK 500 O HOH H 332 O HOH H 472 2.16 REMARK 500 O HOH A 555 O HOH B 368 2.17 REMARK 500 O HOH B 393 O HOH B 456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 307 O HOH B 412 1565 1.81 REMARK 500 O HOH B 347 O HOH B 456 2444 1.99 REMARK 500 O HOH B 344 O HOH B 453 2444 2.10 REMARK 500 O HOH B 310 O HOH B 437 2444 2.16 REMARK 500 O HOH H 489 O HOH A 359 1655 2.19 REMARK 500 O HOH A 538 O HOH B 313 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 137 -158.01 -84.63 REMARK 500 ASP H 149 63.43 64.04 REMARK 500 ALA L 52 -23.03 70.16 REMARK 500 ARG B 31 18.08 59.70 REMARK 500 ALA B 52 -23.02 69.33 REMARK 500 ALA B 85 -174.68 -170.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DTR RELATED DB: PDB REMARK 900 RELATED ID: 8DTT RELATED DB: PDB DBREF 8DTX H 1 221 PDB 8DTX 8DTX 1 221 DBREF 8DTX L 1 217 PDB 8DTX 8DTX 1 217 DBREF 8DTX I 201 215 UNP P0DTC2 SPIKE_SARS2 1145 1159 DBREF 8DTX A 1 221 PDB 8DTX 8DTX 1 221 DBREF 8DTX B 1 217 PDB 8DTX 8DTX 1 217 DBREF 8DTX G 1145 1159 UNP P0DTC2 SPIKE_SARS2 1145 1159 SEQRES 1 H 221 GLN GLU GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS SER SER GLY SEQRES 3 H 221 PHE THR PHE SER TYR PHE TYR LEU HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN SEQRES 5 H 221 PRO ARG GLY ASP GLY THR ARG TYR ALA GLN LYS PHE GLN SEQRES 6 H 221 GLY ARG VAL THR MET THR ARG ASP ALA SER THR GLY THR SEQRES 7 H 221 LEU TYR MET GLU LEU ARG SER LEU ARG SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG GLY ALA ASP HIS GLY ALA SEQRES 9 H 221 PHE ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 10 H 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 221 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 217 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 217 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 217 GLN SER VAL ARG ARG ASN TYR PHE ALA TRP TYR GLN GLN SEQRES 4 L 217 LYS ARG GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SEQRES 5 L 217 SER THR ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 217 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 217 TYR ASP SER SER PRO PRO MET TYR ILE PHE GLY GLN GLY SEQRES 9 L 217 THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER SEQRES 10 L 217 VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER SEQRES 11 L 217 GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR SEQRES 12 L 217 PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA SEQRES 13 L 217 LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN SEQRES 14 L 217 ASP SER LYS ASP SER THR TYR SER LEU SER SER THR LEU SEQRES 15 L 217 THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR SEQRES 16 L 217 ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL SEQRES 17 L 217 THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 I 15 LEU ASP SER PHE LYS GLU GLU LEU ASP LYS TYR PHE LYS SEQRES 2 I 15 ASN HIS SEQRES 1 A 221 GLN GLU GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS SER SER GLY SEQRES 3 A 221 PHE THR PHE SER TYR PHE TYR LEU HIS TRP VAL ARG GLN SEQRES 4 A 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN SEQRES 5 A 221 PRO ARG GLY ASP GLY THR ARG TYR ALA GLN LYS PHE GLN SEQRES 6 A 221 GLY ARG VAL THR MET THR ARG ASP ALA SER THR GLY THR SEQRES 7 A 221 LEU TYR MET GLU LEU ARG SER LEU ARG SER GLU ASP THR SEQRES 8 A 221 ALA VAL TYR TYR CYS ALA ARG GLY ALA ASP HIS GLY ALA SEQRES 9 A 221 PHE ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 10 A 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 A 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 A 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 A 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 A 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 A 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 A 221 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 B 217 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 B 217 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 217 GLN SER VAL ARG ARG ASN TYR PHE ALA TRP TYR GLN GLN SEQRES 4 B 217 LYS ARG GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SEQRES 5 B 217 SER THR ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 217 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 B 217 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 B 217 TYR ASP SER SER PRO PRO MET TYR ILE PHE GLY GLN GLY SEQRES 9 B 217 THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER SEQRES 10 B 217 VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER SEQRES 11 B 217 GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR SEQRES 12 B 217 PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA SEQRES 13 B 217 LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN SEQRES 14 B 217 ASP SER LYS ASP SER THR TYR SER LEU SER SER THR LEU SEQRES 15 B 217 THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR SEQRES 16 B 217 ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL SEQRES 17 B 217 THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 G 15 LEU ASP SER PHE LYS GLU GLU LEU ASP LYS TYR PHE LYS SEQRES 2 G 15 ASN HIS FORMUL 7 HOH *1038(H2 O) HELIX 1 AA1 THR H 28 PHE H 32 5 5 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 SER H 132 THR H 136 5 5 HELIX 4 AA4 SER H 161 ALA H 163 5 3 HELIX 5 AA5 SER H 192 LEU H 194 5 3 HELIX 6 AA6 LYS H 206 ASN H 209 5 4 HELIX 7 AA7 VAL L 29 ASN L 32 5 4 HELIX 8 AA8 GLU L 80 PHE L 84 5 5 HELIX 9 AA9 SER L 124 LYS L 129 1 6 HELIX 10 AB1 LYS L 186 GLU L 190 1 5 HELIX 11 AB2 SER I 203 HIS I 215 1 13 HELIX 12 AB3 THR A 28 PHE A 32 5 5 HELIX 13 AB4 ARG A 87 THR A 91 5 5 HELIX 14 AB5 SER A 132 LYS A 134 5 3 HELIX 15 AB6 SER A 161 ALA A 163 5 3 HELIX 16 AB7 SER A 192 LEU A 194 5 3 HELIX 17 AB8 LYS A 206 ASN A 209 5 4 HELIX 18 AB9 VAL B 29 ASN B 32 5 4 HELIX 19 AC1 GLU B 80 PHE B 84 5 5 HELIX 20 AC2 SER B 124 SER B 130 1 7 HELIX 21 AC3 LYS B 186 LYS B 191 1 6 HELIX 22 AC4 SER G 1147 HIS G 1159 1 13 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA2 6 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA2 6 LEU H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ARG H 59 N ILE H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA3 4 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA3 4 PHE H 105 TRP H 108 -1 O ILE H 107 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 AA4 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 THR H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA5 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AA6 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 11 SHEET 3 AA8 6 VAL L 86 ASP L 93 -1 N TYR L 87 O THR L 105 SHEET 4 AA8 6 PHE L 34 GLN L 39 -1 N GLN L 39 O VAL L 86 SHEET 5 AA8 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 THR L 54 ARG L 55 -1 O THR L 54 N TYR L 50 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 11 SHEET 3 AA9 4 VAL L 86 ASP L 93 -1 N TYR L 87 O THR L 105 SHEET 4 AA9 4 MET L 98 PHE L 101 -1 O ILE L 100 N GLN L 91 SHEET 1 AB1 4 SER L 117 PHE L 121 0 SHEET 2 AB1 4 THR L 132 PHE L 142 -1 O LEU L 138 N PHE L 119 SHEET 3 AB1 4 TYR L 176 SER L 185 -1 O LEU L 184 N ALA L 133 SHEET 4 AB1 4 SER L 162 VAL L 166 -1 N SER L 165 O SER L 179 SHEET 1 AB2 4 ALA L 156 LEU L 157 0 SHEET 2 AB2 4 LYS L 148 VAL L 153 -1 N VAL L 153 O ALA L 156 SHEET 3 AB2 4 VAL L 194 THR L 200 -1 O GLU L 198 N GLN L 150 SHEET 4 AB2 4 VAL L 208 ASN L 213 -1 O VAL L 208 N VAL L 199 SHEET 1 AB3 4 GLN A 3 GLN A 6 0 SHEET 2 AB3 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AB3 4 THR A 78 LEU A 83 -1 O LEU A 79 N CYS A 22 SHEET 4 AB3 4 VAL A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AB4 6 GLU A 10 LYS A 12 0 SHEET 2 AB4 6 THR A 112 VAL A 116 1 O THR A 115 N LYS A 12 SHEET 3 AB4 6 ALA A 92 GLY A 99 -1 N TYR A 94 O THR A 112 SHEET 4 AB4 6 LEU A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AB4 6 GLU A 46 ILE A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AB4 6 THR A 58 TYR A 60 -1 O ARG A 59 N ILE A 50 SHEET 1 AB5 4 GLU A 10 LYS A 12 0 SHEET 2 AB5 4 THR A 112 VAL A 116 1 O THR A 115 N LYS A 12 SHEET 3 AB5 4 ALA A 92 GLY A 99 -1 N TYR A 94 O THR A 112 SHEET 4 AB5 4 PHE A 105 TRP A 108 -1 O ILE A 107 N ARG A 98 SHEET 1 AB6 4 SER A 125 LEU A 129 0 SHEET 2 AB6 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AB6 4 TYR A 181 PRO A 190 -1 O VAL A 189 N ALA A 141 SHEET 4 AB6 4 VAL A 168 THR A 170 -1 N HIS A 169 O VAL A 186 SHEET 1 AB7 4 THR A 136 SER A 137 0 SHEET 2 AB7 4 THR A 140 TYR A 150 -1 O THR A 140 N SER A 137 SHEET 3 AB7 4 TYR A 181 PRO A 190 -1 O VAL A 189 N ALA A 141 SHEET 4 AB7 4 VAL A 174 LEU A 175 -1 N VAL A 174 O SER A 182 SHEET 1 AB8 3 THR A 156 TRP A 159 0 SHEET 2 AB8 3 ILE A 200 HIS A 205 -1 O ASN A 202 N SER A 158 SHEET 3 AB8 3 THR A 210 LYS A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 AB9 4 LEU B 4 SER B 7 0 SHEET 2 AB9 4 ALA B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AB9 4 ASP B 71 ILE B 76 -1 O LEU B 74 N LEU B 21 SHEET 4 AB9 4 PHE B 63 SER B 68 -1 N SER B 64 O THR B 75 SHEET 1 AC1 6 THR B 10 LEU B 13 0 SHEET 2 AC1 6 THR B 105 ILE B 109 1 O LYS B 106 N LEU B 11 SHEET 3 AC1 6 VAL B 86 ASP B 93 -1 N TYR B 87 O THR B 105 SHEET 4 AC1 6 PHE B 34 GLN B 39 -1 N GLN B 39 O VAL B 86 SHEET 5 AC1 6 ARG B 46 TYR B 50 -1 O LEU B 48 N TRP B 36 SHEET 6 AC1 6 THR B 54 ARG B 55 -1 O THR B 54 N TYR B 50 SHEET 1 AC2 4 THR B 10 LEU B 13 0 SHEET 2 AC2 4 THR B 105 ILE B 109 1 O LYS B 106 N LEU B 11 SHEET 3 AC2 4 VAL B 86 ASP B 93 -1 N TYR B 87 O THR B 105 SHEET 4 AC2 4 MET B 98 PHE B 101 -1 O ILE B 100 N GLN B 91 SHEET 1 AC3 4 SER B 117 PHE B 121 0 SHEET 2 AC3 4 THR B 132 PHE B 142 -1 O LEU B 138 N PHE B 119 SHEET 3 AC3 4 TYR B 176 SER B 185 -1 O LEU B 178 N LEU B 139 SHEET 4 AC3 4 SER B 162 VAL B 166 -1 N SER B 165 O SER B 179 SHEET 1 AC4 4 ALA B 156 LEU B 157 0 SHEET 2 AC4 4 LYS B 148 VAL B 153 -1 N VAL B 153 O ALA B 156 SHEET 3 AC4 4 VAL B 194 THR B 200 -1 O GLU B 198 N GLN B 150 SHEET 4 AC4 4 VAL B 208 ASN B 213 -1 O VAL B 208 N VAL B 199 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 2 CYS H 145 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.08 SSBOND 4 CYS L 137 CYS L 197 1555 1555 2.03 SSBOND 5 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 6 CYS A 145 CYS A 201 1555 1555 2.04 SSBOND 7 CYS B 23 CYS B 89 1555 1555 2.09 SSBOND 8 CYS B 137 CYS B 197 1555 1555 2.06 CISPEP 1 PHE H 151 PRO H 152 0 -6.49 CISPEP 2 GLU H 153 PRO H 154 0 -2.55 CISPEP 3 SER L 7 PRO L 8 0 -8.74 CISPEP 4 SER L 95 PRO L 96 0 -1.70 CISPEP 5 TYR L 143 PRO L 144 0 -1.89 CISPEP 6 PHE A 151 PRO A 152 0 -7.24 CISPEP 7 GLU A 153 PRO A 154 0 -0.81 CISPEP 8 SER B 7 PRO B 8 0 -7.97 CISPEP 9 SER B 95 PRO B 96 0 -7.39 CISPEP 10 TYR B 143 PRO B 144 0 -0.22 CRYST1 42.086 76.916 154.379 90.00 93.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023761 0.000000 0.001570 0.00000 SCALE2 0.000000 0.013001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006492 0.00000