data_8DUT # _entry.id 8DUT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DUT pdb_00008dut 10.2210/pdb8dut/pdb WWPDB D_1000267408 ? ? EMDB EMD-27726 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-27726 'associated EM volume' EMDB . EMD-27725 'other EM volume' EMDB . EMD-27727 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DUT _pdbx_database_status.recvd_initial_deposition_date 2022-07-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Monsen, R.C.' 1 0000-0002-6283-3249 'Chua, E.Y.D.' 2 0000-0003-1224-2157 'Hopkins, J.B.' 3 0000-0001-8554-8072 'Chaires, J.B.' 4 0000-0001-5477-945X 'Trent, J.O.' 5 0000-0002-7346-4231 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 51 _citation.language ? _citation.page_first 1943 _citation.page_last 1959 _citation.title 'Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 angstrom resolution with cryo-EM.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkad014 _citation.pdbx_database_id_PubMed 36715343 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Monsen, R.C.' 1 ? primary 'Chua, E.Y.D.' 2 ? primary 'Hopkins, J.B.' 3 ? primary 'Chaires, J.B.' 4 ? primary 'Trent, J.O.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8DUT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Duplex-G-quadruplex-duplex (46-MER)' 14086.031 1 ? ? ? ? 2 polymer syn 'Duplex-G-quadruplex-duplex (46-MER)' 14407.232 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DG)(DC)(DG)(DT)(DG)(DC)(DC)(DG)(DC)(DA)(DT)(DT)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DG)(DT)(DA)(DT) (DA)(DC)(DA)(DT)(DA)(DG) ; GCGTGCCGCATTAATTTTTTTTTTTTTTTTTTTTTTGTATACATAG A ? 2 polydeoxyribonucleotide no no ;(DC)(DT)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DC)(DA)(DA)(DA)(DG)(DA)(DG)(DG)(DG)(DT)(DG) (DG)(DG)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DT)(DT)(DA)(DA)(DT)(DG)(DC)(DG) (DG)(DC)(DA)(DC)(DG)(DC) ; CTATGTATACAAAGAGGGTGGGTAGGGTGGGTTTAATGCGGCACGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DA n 1 15 DT n 1 16 DT n 1 17 DT n 1 18 DT n 1 19 DT n 1 20 DT n 1 21 DT n 1 22 DT n 1 23 DT n 1 24 DT n 1 25 DT n 1 26 DT n 1 27 DT n 1 28 DT n 1 29 DT n 1 30 DT n 1 31 DT n 1 32 DT n 1 33 DT n 1 34 DT n 1 35 DT n 1 36 DT n 1 37 DG n 1 38 DT n 1 39 DA n 1 40 DT n 1 41 DA n 1 42 DC n 1 43 DA n 1 44 DT n 1 45 DA n 1 46 DG n 2 1 DC n 2 2 DT n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DG n 2 15 DA n 2 16 DG n 2 17 DG n 2 18 DG n 2 19 DT n 2 20 DG n 2 21 DG n 2 22 DG n 2 23 DT n 2 24 DA n 2 25 DG n 2 26 DG n 2 27 DG n 2 28 DT n 2 29 DG n 2 30 DG n 2 31 DG n 2 32 DT n 2 33 DT n 2 34 DT n 2 35 DA n 2 36 DA n 2 37 DT n 2 38 DG n 2 39 DC n 2 40 DG n 2 41 DG n 2 42 DC n 2 43 DA n 2 44 DC n 2 45 DG n 2 46 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 46 'synthetic construct' ? 32630 ? 2 1 sample 1 46 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8DUT 8DUT ? 1 ? 1 2 PDB 8DUT 8DUT ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DUT A 1 ? 46 ? 8DUT 1 ? 46 ? 1 46 2 2 8DUT B 1 ? 46 ? 8DUT 47 ? 92 ? 47 92 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DUT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8DUT _struct.title 'Duplex-G-quadruplex-duplex (DGD) class_1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DUT _struct_keywords.text 'G-quadruplex, promoter, duplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 45 N1 ? ? A DC 2 B DG 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 45 O6 ? ? A DC 2 B DG 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 45 N2 ? ? A DC 2 B DG 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 44 N3 ? ? A DG 3 B DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 44 O2 ? ? A DG 3 B DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 44 N4 ? ? A DG 3 B DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 43 N1 ? ? A DT 4 B DA 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 43 N6 ? ? A DT 4 B DA 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 42 N3 ? ? A DG 5 B DC 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 42 O2 ? ? A DG 5 B DC 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 42 N4 ? ? A DG 5 B DC 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 41 N1 ? ? A DC 6 B DG 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 41 O6 ? ? A DC 6 B DG 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 41 N2 ? ? A DC 6 B DG 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 40 N1 ? ? A DC 7 B DG 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 40 O6 ? ? A DC 7 B DG 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 40 N2 ? ? A DC 7 B DG 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 39 N3 ? ? A DG 8 B DC 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 39 O2 ? ? A DG 8 B DC 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 39 N4 ? ? A DG 8 B DC 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 38 N1 ? ? A DC 9 B DG 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 38 O6 ? ? A DC 9 B DG 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 38 N2 ? ? A DC 9 B DG 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 37 N3 ? ? A DA 10 B DT 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 37 O4 ? ? A DA 10 B DT 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 36 N1 ? ? A DT 11 B DA 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 36 N6 ? ? A DT 11 B DA 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 35 N1 ? ? A DT 12 B DA 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 35 N6 ? ? A DT 12 B DA 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 34 N3 ? ? A DA 13 B DT 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 34 O4 ? ? A DA 13 B DT 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 33 N3 ? ? A DA 14 B DT 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 33 O4 ? ? A DA 14 B DT 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DT 32 O4 ? ? A DT 15 B DT 78 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog35 hydrog ? ? A DT 15 O2 ? ? ? 1_555 B DT 32 N3 ? ? A DT 15 B DT 78 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog36 hydrog ? ? A DT 27 N3 ? ? ? 1_555 B DA 24 N1 ? ? A DT 27 B DA 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog37 hydrog ? ? A DT 27 O2 ? ? ? 1_555 B DA 24 N6 ? ? A DT 27 B DA 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog38 hydrog ? ? A DT 32 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 32 B DA 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 32 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 32 B DA 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 33 N3 ? ? ? 1_555 B DG 14 O6 ? ? A DT 33 B DG 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A DT 33 O2 ? ? ? 1_555 B DG 14 N1 ? ? A DT 33 B DG 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? A DT 34 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 34 B DA 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DT 34 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 34 B DA 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DT 35 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 35 B DA 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DT 35 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 35 B DA 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DT 36 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 36 B DA 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DT 36 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 36 B DA 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 37 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 37 B DC 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DG 37 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 37 B DC 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DG 37 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 37 B DC 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DT 38 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 38 B DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DT 38 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 38 B DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DA 39 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 39 B DT 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DA 39 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 39 B DT 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DT 40 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 40 B DA 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DT 40 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 40 B DA 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A DA 41 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 41 B DT 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DA 41 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 41 B DT 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 42 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 42 B DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DC 42 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 42 B DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DC 42 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 42 B DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DA 43 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 43 B DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DA 43 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 43 B DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DT 44 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 44 B DA 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DT 44 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 44 B DA 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DA 45 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 45 B DT 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DA 45 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 45 B DT 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DG 46 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 46 B DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DG 46 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 46 B DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DG 46 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 46 B DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B DG 16 N1 ? ? ? 1_555 B DG 20 O6 ? ? B DG 62 B DG 66 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog72 hydrog ? ? B DG 16 N2 ? ? ? 1_555 B DG 20 N7 ? ? B DG 62 B DG 66 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog73 hydrog ? ? B DG 16 N7 ? ? ? 1_555 B DG 29 N2 ? ? B DG 62 B DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog74 hydrog ? ? B DG 16 O6 ? ? ? 1_555 B DG 29 N1 ? ? B DG 62 B DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog75 hydrog ? ? B DG 17 N1 ? ? ? 1_555 B DG 21 O6 ? ? B DG 63 B DG 67 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog76 hydrog ? ? B DG 17 N2 ? ? ? 1_555 B DG 21 N7 ? ? B DG 63 B DG 67 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog77 hydrog ? ? B DG 17 N7 ? ? ? 1_555 B DG 30 N2 ? ? B DG 63 B DG 76 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog78 hydrog ? ? B DG 17 O6 ? ? ? 1_555 B DG 30 N1 ? ? B DG 63 B DG 76 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? B DG 18 N1 ? ? ? 1_555 B DG 22 O6 ? ? B DG 64 B DG 68 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B DG 18 N2 ? ? ? 1_555 B DG 22 N7 ? ? B DG 64 B DG 68 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog81 hydrog ? ? B DG 18 N7 ? ? ? 1_555 B DG 31 N2 ? ? B DG 64 B DG 77 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? B DG 18 O6 ? ? ? 1_555 B DG 31 N1 ? ? B DG 64 B DG 77 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog83 hydrog ? ? B DG 20 N1 ? ? ? 1_555 B DG 25 O6 ? ? B DG 66 B DG 71 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog84 hydrog ? ? B DG 20 N2 ? ? ? 1_555 B DG 25 N7 ? ? B DG 66 B DG 71 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog85 hydrog ? ? B DG 21 N1 ? ? ? 1_555 B DG 26 O6 ? ? B DG 67 B DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog86 hydrog ? ? B DG 21 N2 ? ? ? 1_555 B DG 26 N7 ? ? B DG 67 B DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog87 hydrog ? ? B DG 22 N1 ? ? ? 1_555 B DG 27 O6 ? ? B DG 68 B DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog88 hydrog ? ? B DG 22 N2 ? ? ? 1_555 B DG 27 N7 ? ? B DG 68 B DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog89 hydrog ? ? B DG 25 N1 ? ? ? 1_555 B DG 29 O6 ? ? B DG 71 B DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog90 hydrog ? ? B DG 25 N2 ? ? ? 1_555 B DG 29 N7 ? ? B DG 71 B DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog91 hydrog ? ? B DG 26 N1 ? ? ? 1_555 B DG 30 O6 ? ? B DG 72 B DG 76 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog92 hydrog ? ? B DG 26 N2 ? ? ? 1_555 B DG 30 N7 ? ? B DG 72 B DG 76 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog93 hydrog ? ? B DG 27 N1 ? ? ? 1_555 B DG 31 O6 ? ? B DG 73 B DG 77 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog94 hydrog ? ? B DG 27 N2 ? ? ? 1_555 B DG 31 N7 ? ? B DG 73 B DG 77 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog95 hydrog ? ? B DA 43 N3 ? ? ? 1_555 B DC 46 N4 ? ? B DA 89 B DC 92 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8DUT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DT 23 23 23 DT DT A . n A 1 24 DT 24 24 24 DT DT A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DT 26 26 26 DT DT A . n A 1 27 DT 27 27 27 DT DT A . n A 1 28 DT 28 28 28 DT DT A . n A 1 29 DT 29 29 29 DT DT A . n A 1 30 DT 30 30 30 DT DT A . n A 1 31 DT 31 31 31 DT DT A . n A 1 32 DT 32 32 32 DT DT A . n A 1 33 DT 33 33 33 DT DT A . n A 1 34 DT 34 34 34 DT DT A . n A 1 35 DT 35 35 35 DT DT A . n A 1 36 DT 36 36 36 DT DT A . n A 1 37 DG 37 37 37 DG DG A . n A 1 38 DT 38 38 38 DT DT A . n A 1 39 DA 39 39 39 DA DA A . n A 1 40 DT 40 40 40 DT DT A . n A 1 41 DA 41 41 41 DA DA A . n A 1 42 DC 42 42 42 DC DC A . n A 1 43 DA 43 43 43 DA DA A . n A 1 44 DT 44 44 44 DT DT A . n A 1 45 DA 45 45 45 DA DA A . n A 1 46 DG 46 46 46 DG DG A . n B 2 1 DC 1 47 47 DC DC B . n B 2 2 DT 2 48 48 DT DT B . n B 2 3 DA 3 49 49 DA DA B . n B 2 4 DT 4 50 50 DT DT B . n B 2 5 DG 5 51 51 DG DG B . n B 2 6 DT 6 52 52 DT DT B . n B 2 7 DA 7 53 53 DA DA B . n B 2 8 DT 8 54 54 DT DT B . n B 2 9 DA 9 55 55 DA DA B . n B 2 10 DC 10 56 56 DC DC B . n B 2 11 DA 11 57 57 DA DA B . n B 2 12 DA 12 58 58 DA DA B . n B 2 13 DA 13 59 59 DA DA B . n B 2 14 DG 14 60 60 DG DG B . n B 2 15 DA 15 61 61 DA DA B . n B 2 16 DG 16 62 62 DG DG B . n B 2 17 DG 17 63 63 DG DG B . n B 2 18 DG 18 64 64 DG DG B . n B 2 19 DT 19 65 65 DT DT B . n B 2 20 DG 20 66 66 DG DG B . n B 2 21 DG 21 67 67 DG DG B . n B 2 22 DG 22 68 68 DG DG B . n B 2 23 DT 23 69 69 DT DT B . n B 2 24 DA 24 70 70 DA DA B . n B 2 25 DG 25 71 71 DG DG B . n B 2 26 DG 26 72 72 DG DG B . n B 2 27 DG 27 73 73 DG DG B . n B 2 28 DT 28 74 74 DT DT B . n B 2 29 DG 29 75 75 DG DG B . n B 2 30 DG 30 76 76 DG DG B . n B 2 31 DG 31 77 77 DG DG B . n B 2 32 DT 32 78 78 DT DT B . n B 2 33 DT 33 79 79 DT DT B . n B 2 34 DT 34 80 80 DT DT B . n B 2 35 DA 35 81 81 DA DA B . n B 2 36 DA 36 82 82 DA DA B . n B 2 37 DT 37 83 83 DT DT B . n B 2 38 DG 38 84 84 DG DG B . n B 2 39 DC 39 85 85 DC DC B . n B 2 40 DG 40 86 86 DG DG B . n B 2 41 DG 41 87 87 DG DG B . n B 2 42 DC 42 88 88 DC DC B . n B 2 43 DA 43 89 89 DA DA B . n B 2 44 DC 44 90 90 DC DC B . n B 2 45 DG 45 91 91 DG DG B . n B 2 46 DC 46 92 92 DC DC B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email john.trent@louisville.edu _pdbx_contact_author.name_first John _pdbx_contact_author.name_last Trent _pdbx_contact_author.name_mi O _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7346-4231 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-08 2 'Structure model' 1 1 2023-03-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _em_3d_fitting.entry_id 8DUT _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 557.2 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'map correlation' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8DUT _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 110105 _em_3d_reconstruction.resolution 7.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'synthetic duplex-G-quadruplex-duplex construct mimicking a promoter G4' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8DUT _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen HELIUM _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.700 _em_imaging.nominal_defocus_max 2700 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 278 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 8DUT _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8DUT _em_experiment.id 1 _em_experiment.aggregation_state '2D ARRAY' _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DG 1 ? ? N7 A DG 1 ? ? 1.341 1.388 -0.047 0.006 N 2 1 "O3'" A DG 1 ? ? P A DC 2 ? ? 1.736 1.607 0.129 0.012 Y 3 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.728 1.593 0.135 0.010 N 4 1 C2 A DC 2 ? ? N3 A DC 2 ? ? 1.412 1.353 0.059 0.008 N 5 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.284 1.335 -0.051 0.007 N 6 1 "O3'" A DC 2 ? ? P A DG 3 ? ? 1.733 1.607 0.126 0.012 Y 7 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.727 1.593 0.134 0.010 N 8 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.342 1.388 -0.046 0.006 N 9 1 "O3'" A DG 3 ? ? P A DT 4 ? ? 1.733 1.607 0.126 0.012 Y 10 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.725 1.593 0.132 0.010 N 11 1 "O3'" A DT 4 ? ? P A DG 5 ? ? 1.730 1.607 0.123 0.012 Y 12 1 P A DG 5 ? ? "O5'" A DG 5 ? ? 1.726 1.593 0.133 0.010 N 13 1 C5 A DG 5 ? ? N7 A DG 5 ? ? 1.343 1.388 -0.045 0.006 N 14 1 "O3'" A DG 5 ? ? P A DC 6 ? ? 1.733 1.607 0.126 0.012 Y 15 1 P A DC 6 ? ? "O5'" A DC 6 ? ? 1.728 1.593 0.135 0.010 N 16 1 C2 A DC 6 ? ? N3 A DC 6 ? ? 1.411 1.353 0.058 0.008 N 17 1 N3 A DC 6 ? ? C4 A DC 6 ? ? 1.284 1.335 -0.051 0.007 N 18 1 "O3'" A DC 6 ? ? P A DC 7 ? ? 1.733 1.607 0.126 0.012 Y 19 1 P A DC 7 ? ? "O5'" A DC 7 ? ? 1.722 1.593 0.129 0.010 N 20 1 C2 A DC 7 ? ? N3 A DC 7 ? ? 1.409 1.353 0.056 0.008 N 21 1 N3 A DC 7 ? ? C4 A DC 7 ? ? 1.285 1.335 -0.050 0.007 N 22 1 "O3'" A DC 7 ? ? P A DG 8 ? ? 1.732 1.607 0.125 0.012 Y 23 1 P A DG 8 ? ? "O5'" A DG 8 ? ? 1.726 1.593 0.133 0.010 N 24 1 C5 A DG 8 ? ? N7 A DG 8 ? ? 1.343 1.388 -0.045 0.006 N 25 1 "O3'" A DG 8 ? ? P A DC 9 ? ? 1.723 1.607 0.116 0.012 Y 26 1 P A DC 9 ? ? "O5'" A DC 9 ? ? 1.726 1.593 0.133 0.010 N 27 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.410 1.353 0.057 0.008 N 28 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.284 1.335 -0.051 0.007 N 29 1 "O3'" A DC 9 ? ? P A DA 10 ? ? 1.731 1.607 0.124 0.012 Y 30 1 P A DA 10 ? ? "O5'" A DA 10 ? ? 1.725 1.593 0.132 0.010 N 31 1 C5 A DA 10 ? ? N7 A DA 10 ? ? 1.341 1.388 -0.047 0.006 N 32 1 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.391 1.335 0.056 0.008 N 33 1 "O3'" A DA 10 ? ? P A DT 11 ? ? 1.735 1.607 0.128 0.012 Y 34 1 P A DT 11 ? ? "O5'" A DT 11 ? ? 1.728 1.593 0.135 0.010 N 35 1 "O3'" A DT 11 ? ? P A DT 12 ? ? 1.734 1.607 0.127 0.012 Y 36 1 P A DT 12 ? ? "O5'" A DT 12 ? ? 1.724 1.593 0.131 0.010 N 37 1 "O3'" A DT 12 ? ? P A DA 13 ? ? 1.729 1.607 0.122 0.012 Y 38 1 P A DA 13 ? ? "O5'" A DA 13 ? ? 1.725 1.593 0.132 0.010 N 39 1 C5 A DA 13 ? ? N7 A DA 13 ? ? 1.340 1.388 -0.048 0.006 N 40 1 C6 A DA 13 ? ? N6 A DA 13 ? ? 1.392 1.335 0.057 0.008 N 41 1 "O3'" A DA 13 ? ? P A DA 14 ? ? 1.737 1.607 0.130 0.012 Y 42 1 P A DA 14 ? ? "O5'" A DA 14 ? ? 1.729 1.593 0.136 0.010 N 43 1 C5 A DA 14 ? ? N7 A DA 14 ? ? 1.342 1.388 -0.046 0.006 N 44 1 C6 A DA 14 ? ? N6 A DA 14 ? ? 1.392 1.335 0.057 0.008 N 45 1 "O3'" A DA 14 ? ? P A DT 15 ? ? 1.741 1.607 0.134 0.012 Y 46 1 P A DT 15 ? ? "O5'" A DT 15 ? ? 1.736 1.593 0.143 0.010 N 47 1 "O3'" A DT 15 ? ? P A DT 16 ? ? 1.744 1.607 0.137 0.012 Y 48 1 P A DT 16 ? ? "O5'" A DT 16 ? ? 1.740 1.593 0.147 0.010 N 49 1 "C5'" A DT 16 ? ? "C4'" A DT 16 ? ? 1.555 1.512 0.043 0.007 N 50 1 "O3'" A DT 16 ? ? P A DT 17 ? ? 1.733 1.607 0.126 0.012 Y 51 1 P A DT 17 ? ? "O5'" A DT 17 ? ? 1.728 1.593 0.135 0.010 N 52 1 "O3'" A DT 17 ? ? P A DT 18 ? ? 1.742 1.607 0.135 0.012 Y 53 1 P A DT 18 ? ? "O5'" A DT 18 ? ? 1.725 1.593 0.132 0.010 N 54 1 "O3'" A DT 18 ? ? P A DT 19 ? ? 1.737 1.607 0.130 0.012 Y 55 1 P A DT 19 ? ? "O5'" A DT 19 ? ? 1.733 1.593 0.140 0.010 N 56 1 "O3'" A DT 19 ? ? P A DT 20 ? ? 1.730 1.607 0.123 0.012 Y 57 1 P A DT 20 ? ? "O5'" A DT 20 ? ? 1.728 1.593 0.135 0.010 N 58 1 "O3'" A DT 20 ? ? P A DT 21 ? ? 1.733 1.607 0.126 0.012 Y 59 1 P A DT 21 ? ? "O5'" A DT 21 ? ? 1.742 1.593 0.149 0.010 N 60 1 "O3'" A DT 21 ? ? P A DT 22 ? ? 1.734 1.607 0.127 0.012 Y 61 1 P A DT 22 ? ? "O5'" A DT 22 ? ? 1.725 1.593 0.132 0.010 N 62 1 "O3'" A DT 22 ? ? P A DT 23 ? ? 1.749 1.607 0.142 0.012 Y 63 1 P A DT 23 ? ? "O5'" A DT 23 ? ? 1.724 1.593 0.131 0.010 N 64 1 "O3'" A DT 23 ? ? P A DT 24 ? ? 1.735 1.607 0.128 0.012 Y 65 1 P A DT 24 ? ? "O5'" A DT 24 ? ? 1.730 1.593 0.137 0.010 N 66 1 "O3'" A DT 24 ? ? P A DT 25 ? ? 1.733 1.607 0.126 0.012 Y 67 1 P A DT 25 ? ? "O5'" A DT 25 ? ? 1.730 1.593 0.137 0.010 N 68 1 "O3'" A DT 25 ? ? P A DT 26 ? ? 1.731 1.607 0.124 0.012 Y 69 1 P A DT 26 ? ? "O5'" A DT 26 ? ? 1.731 1.593 0.138 0.010 N 70 1 "O3'" A DT 26 ? ? P A DT 27 ? ? 1.728 1.607 0.121 0.012 Y 71 1 P A DT 27 ? ? "O5'" A DT 27 ? ? 1.726 1.593 0.133 0.010 N 72 1 "O3'" A DT 27 ? ? P A DT 28 ? ? 1.734 1.607 0.127 0.012 Y 73 1 P A DT 28 ? ? "O5'" A DT 28 ? ? 1.737 1.593 0.144 0.010 N 74 1 "O3'" A DT 28 ? ? P A DT 29 ? ? 1.744 1.607 0.137 0.012 Y 75 1 P A DT 29 ? ? "O5'" A DT 29 ? ? 1.724 1.593 0.131 0.010 N 76 1 "O3'" A DT 29 ? ? P A DT 30 ? ? 1.736 1.607 0.129 0.012 Y 77 1 P A DT 30 ? ? "O5'" A DT 30 ? ? 1.728 1.593 0.135 0.010 N 78 1 "O3'" A DT 30 ? ? P A DT 31 ? ? 1.734 1.607 0.127 0.012 Y 79 1 P A DT 31 ? ? "O5'" A DT 31 ? ? 1.727 1.593 0.134 0.010 N 80 1 "O3'" A DT 31 ? ? P A DT 32 ? ? 1.733 1.607 0.126 0.012 Y 81 1 P A DT 32 ? ? "O5'" A DT 32 ? ? 1.730 1.593 0.137 0.010 N 82 1 "O3'" A DT 32 ? ? P A DT 33 ? ? 1.734 1.607 0.127 0.012 Y 83 1 P A DT 33 ? ? "O5'" A DT 33 ? ? 1.723 1.593 0.130 0.010 N 84 1 "O3'" A DT 33 ? ? P A DT 34 ? ? 1.736 1.607 0.129 0.012 Y 85 1 P A DT 34 ? ? "O5'" A DT 34 ? ? 1.725 1.593 0.132 0.010 N 86 1 "O3'" A DT 34 ? ? P A DT 35 ? ? 1.735 1.607 0.128 0.012 Y 87 1 P A DT 35 ? ? "O5'" A DT 35 ? ? 1.726 1.593 0.133 0.010 N 88 1 "O3'" A DT 35 ? ? P A DT 36 ? ? 1.733 1.607 0.126 0.012 Y 89 1 P A DT 36 ? ? "O5'" A DT 36 ? ? 1.727 1.593 0.134 0.010 N 90 1 "O3'" A DT 36 ? ? P A DG 37 ? ? 1.732 1.607 0.125 0.012 Y 91 1 P A DG 37 ? ? "O5'" A DG 37 ? ? 1.726 1.593 0.133 0.010 N 92 1 C5 A DG 37 ? ? N7 A DG 37 ? ? 1.342 1.388 -0.046 0.006 N 93 1 "O3'" A DG 37 ? ? P A DT 38 ? ? 1.730 1.607 0.123 0.012 Y 94 1 P A DT 38 ? ? "O5'" A DT 38 ? ? 1.724 1.593 0.131 0.010 N 95 1 "O3'" A DT 38 ? ? P A DA 39 ? ? 1.734 1.607 0.127 0.012 Y 96 1 P A DA 39 ? ? "O5'" A DA 39 ? ? 1.726 1.593 0.133 0.010 N 97 1 C5 A DA 39 ? ? N7 A DA 39 ? ? 1.343 1.388 -0.045 0.006 N 98 1 C6 A DA 39 ? ? N6 A DA 39 ? ? 1.391 1.335 0.056 0.008 N 99 1 "O3'" A DA 39 ? ? P A DT 40 ? ? 1.734 1.607 0.127 0.012 Y 100 1 P A DT 40 ? ? "O5'" A DT 40 ? ? 1.727 1.593 0.134 0.010 N 101 1 "O3'" A DT 40 ? ? P A DA 41 ? ? 1.734 1.607 0.127 0.012 Y 102 1 P A DA 41 ? ? "O5'" A DA 41 ? ? 1.728 1.593 0.135 0.010 N 103 1 C5 A DA 41 ? ? N7 A DA 41 ? ? 1.342 1.388 -0.046 0.006 N 104 1 C6 A DA 41 ? ? N6 A DA 41 ? ? 1.391 1.335 0.056 0.008 N 105 1 "O3'" A DA 41 ? ? P A DC 42 ? ? 1.734 1.607 0.127 0.012 Y 106 1 P A DC 42 ? ? "O5'" A DC 42 ? ? 1.727 1.593 0.134 0.010 N 107 1 C2 A DC 42 ? ? N3 A DC 42 ? ? 1.409 1.353 0.056 0.008 N 108 1 N3 A DC 42 ? ? C4 A DC 42 ? ? 1.284 1.335 -0.051 0.007 N 109 1 "O3'" A DC 42 ? ? P A DA 43 ? ? 1.734 1.607 0.127 0.012 Y 110 1 P A DA 43 ? ? "O5'" A DA 43 ? ? 1.730 1.593 0.137 0.010 N 111 1 C5 A DA 43 ? ? N7 A DA 43 ? ? 1.341 1.388 -0.047 0.006 N 112 1 C6 A DA 43 ? ? N6 A DA 43 ? ? 1.392 1.335 0.057 0.008 N 113 1 "O3'" A DA 43 ? ? P A DT 44 ? ? 1.735 1.607 0.128 0.012 Y 114 1 P A DT 44 ? ? "O5'" A DT 44 ? ? 1.726 1.593 0.133 0.010 N 115 1 "O3'" A DT 44 ? ? P A DA 45 ? ? 1.735 1.607 0.128 0.012 Y 116 1 P A DA 45 ? ? "O5'" A DA 45 ? ? 1.724 1.593 0.131 0.010 N 117 1 C5 A DA 45 ? ? N7 A DA 45 ? ? 1.342 1.388 -0.046 0.006 N 118 1 C6 A DA 45 ? ? N6 A DA 45 ? ? 1.391 1.335 0.056 0.008 N 119 1 "O3'" A DA 45 ? ? P A DG 46 ? ? 1.726 1.607 0.119 0.012 Y 120 1 P A DG 46 ? ? "O5'" A DG 46 ? ? 1.726 1.593 0.133 0.010 N 121 1 C5 A DG 46 ? ? N7 A DG 46 ? ? 1.343 1.388 -0.045 0.006 N 122 1 C2 B DC 47 ? ? N3 B DC 47 ? ? 1.411 1.353 0.058 0.008 N 123 1 N3 B DC 47 ? ? C4 B DC 47 ? ? 1.285 1.335 -0.050 0.007 N 124 1 "O3'" B DC 47 ? ? P B DT 48 ? ? 1.733 1.607 0.126 0.012 Y 125 1 P B DT 48 ? ? "O5'" B DT 48 ? ? 1.726 1.593 0.133 0.010 N 126 1 "O3'" B DT 48 ? ? P B DA 49 ? ? 1.726 1.607 0.119 0.012 Y 127 1 P B DA 49 ? ? "O5'" B DA 49 ? ? 1.724 1.593 0.131 0.010 N 128 1 C5 B DA 49 ? ? N7 B DA 49 ? ? 1.341 1.388 -0.047 0.006 N 129 1 C6 B DA 49 ? ? N6 B DA 49 ? ? 1.389 1.335 0.054 0.008 N 130 1 "O3'" B DA 49 ? ? P B DT 50 ? ? 1.735 1.607 0.128 0.012 Y 131 1 P B DT 50 ? ? "O5'" B DT 50 ? ? 1.726 1.593 0.133 0.010 N 132 1 "O3'" B DT 50 ? ? P B DG 51 ? ? 1.733 1.607 0.126 0.012 Y 133 1 P B DG 51 ? ? "O5'" B DG 51 ? ? 1.725 1.593 0.132 0.010 N 134 1 C5 B DG 51 ? ? N7 B DG 51 ? ? 1.342 1.388 -0.046 0.006 N 135 1 "O3'" B DG 51 ? ? P B DT 52 ? ? 1.734 1.607 0.127 0.012 Y 136 1 P B DT 52 ? ? "O5'" B DT 52 ? ? 1.723 1.593 0.130 0.010 N 137 1 "O3'" B DT 52 ? ? P B DA 53 ? ? 1.723 1.607 0.116 0.012 Y 138 1 P B DA 53 ? ? "O5'" B DA 53 ? ? 1.727 1.593 0.134 0.010 N 139 1 C5 B DA 53 ? ? N7 B DA 53 ? ? 1.342 1.388 -0.046 0.006 N 140 1 C6 B DA 53 ? ? N6 B DA 53 ? ? 1.391 1.335 0.056 0.008 N 141 1 "O3'" B DA 53 ? ? P B DT 54 ? ? 1.743 1.607 0.136 0.012 Y 142 1 P B DT 54 ? ? "O5'" B DT 54 ? ? 1.722 1.593 0.129 0.010 N 143 1 "O3'" B DT 54 ? ? P B DA 55 ? ? 1.735 1.607 0.128 0.012 Y 144 1 P B DA 55 ? ? "O5'" B DA 55 ? ? 1.732 1.593 0.139 0.010 N 145 1 C5 B DA 55 ? ? N7 B DA 55 ? ? 1.342 1.388 -0.046 0.006 N 146 1 C6 B DA 55 ? ? N6 B DA 55 ? ? 1.390 1.335 0.055 0.008 N 147 1 "O3'" B DA 55 ? ? P B DC 56 ? ? 1.733 1.607 0.126 0.012 Y 148 1 P B DC 56 ? ? "O5'" B DC 56 ? ? 1.726 1.593 0.133 0.010 N 149 1 C2 B DC 56 ? ? N3 B DC 56 ? ? 1.409 1.353 0.056 0.008 N 150 1 N3 B DC 56 ? ? C4 B DC 56 ? ? 1.284 1.335 -0.051 0.007 N 151 1 "O3'" B DC 56 ? ? P B DA 57 ? ? 1.724 1.607 0.117 0.012 Y 152 1 P B DA 57 ? ? "O5'" B DA 57 ? ? 1.724 1.593 0.131 0.010 N 153 1 C5 B DA 57 ? ? N7 B DA 57 ? ? 1.343 1.388 -0.045 0.006 N 154 1 C6 B DA 57 ? ? N6 B DA 57 ? ? 1.391 1.335 0.056 0.008 N 155 1 "O3'" B DA 57 ? ? P B DA 58 ? ? 1.734 1.607 0.127 0.012 Y 156 1 P B DA 58 ? ? "O5'" B DA 58 ? ? 1.726 1.593 0.133 0.010 N 157 1 C5 B DA 58 ? ? N7 B DA 58 ? ? 1.342 1.388 -0.046 0.006 N 158 1 C6 B DA 58 ? ? N6 B DA 58 ? ? 1.391 1.335 0.056 0.008 N 159 1 "O3'" B DA 58 ? ? P B DA 59 ? ? 1.733 1.607 0.126 0.012 Y 160 1 P B DA 59 ? ? "O5'" B DA 59 ? ? 1.729 1.593 0.136 0.010 N 161 1 C5 B DA 59 ? ? N7 B DA 59 ? ? 1.342 1.388 -0.046 0.006 N 162 1 C6 B DA 59 ? ? N6 B DA 59 ? ? 1.391 1.335 0.056 0.008 N 163 1 "O3'" B DA 59 ? ? P B DG 60 ? ? 1.734 1.607 0.127 0.012 Y 164 1 P B DG 60 ? ? "O5'" B DG 60 ? ? 1.726 1.593 0.133 0.010 N 165 1 C5 B DG 60 ? ? N7 B DG 60 ? ? 1.342 1.388 -0.046 0.006 N 166 1 "O3'" B DG 60 ? ? P B DA 61 ? ? 1.735 1.607 0.128 0.012 Y 167 1 P B DA 61 ? ? "O5'" B DA 61 ? ? 1.733 1.593 0.140 0.010 N 168 1 C5 B DA 61 ? ? N7 B DA 61 ? ? 1.342 1.388 -0.046 0.006 N 169 1 C6 B DA 61 ? ? N6 B DA 61 ? ? 1.391 1.335 0.056 0.008 N 170 1 "O3'" B DA 61 ? ? P B DG 62 ? ? 1.724 1.607 0.117 0.012 Y 171 1 P B DG 62 ? ? "O5'" B DG 62 ? ? 1.724 1.593 0.131 0.010 N 172 1 C5 B DG 62 ? ? N7 B DG 62 ? ? 1.341 1.388 -0.047 0.006 N 173 1 "O3'" B DG 62 ? ? P B DG 63 ? ? 1.734 1.607 0.127 0.012 Y 174 1 P B DG 63 ? ? "O5'" B DG 63 ? ? 1.726 1.593 0.133 0.010 N 175 1 C5 B DG 63 ? ? N7 B DG 63 ? ? 1.342 1.388 -0.046 0.006 N 176 1 "O3'" B DG 63 ? ? P B DG 64 ? ? 1.728 1.607 0.121 0.012 Y 177 1 P B DG 64 ? ? "O5'" B DG 64 ? ? 1.724 1.593 0.131 0.010 N 178 1 C5 B DG 64 ? ? N7 B DG 64 ? ? 1.341 1.388 -0.047 0.006 N 179 1 "O3'" B DG 64 ? ? P B DT 65 ? ? 1.732 1.607 0.125 0.012 Y 180 1 P B DT 65 ? ? "O5'" B DT 65 ? ? 1.726 1.593 0.133 0.010 N 181 1 "O3'" B DT 65 ? ? P B DG 66 ? ? 1.727 1.607 0.120 0.012 Y 182 1 P B DG 66 ? ? "O5'" B DG 66 ? ? 1.727 1.593 0.134 0.010 N 183 1 C5 B DG 66 ? ? N7 B DG 66 ? ? 1.336 1.388 -0.052 0.006 N 184 1 "O3'" B DG 66 ? ? P B DG 67 ? ? 1.734 1.607 0.127 0.012 Y 185 1 P B DG 67 ? ? "O5'" B DG 67 ? ? 1.730 1.593 0.137 0.010 N 186 1 C5 B DG 67 ? ? N7 B DG 67 ? ? 1.339 1.388 -0.049 0.006 N 187 1 "O3'" B DG 67 ? ? P B DG 68 ? ? 1.733 1.607 0.126 0.012 Y 188 1 P B DG 68 ? ? "O5'" B DG 68 ? ? 1.727 1.593 0.134 0.010 N 189 1 C5 B DG 68 ? ? N7 B DG 68 ? ? 1.341 1.388 -0.047 0.006 N 190 1 "O3'" B DG 68 ? ? P B DT 69 ? ? 1.734 1.607 0.127 0.012 Y 191 1 P B DT 69 ? ? "O5'" B DT 69 ? ? 1.724 1.593 0.131 0.010 N 192 1 "O3'" B DT 69 ? ? P B DA 70 ? ? 1.737 1.607 0.130 0.012 Y 193 1 P B DA 70 ? ? "O5'" B DA 70 ? ? 1.732 1.593 0.139 0.010 N 194 1 C5 B DA 70 ? ? N7 B DA 70 ? ? 1.340 1.388 -0.048 0.006 N 195 1 C6 B DA 70 ? ? N6 B DA 70 ? ? 1.391 1.335 0.056 0.008 N 196 1 "O3'" B DA 70 ? ? P B DG 71 ? ? 1.730 1.607 0.123 0.012 Y 197 1 P B DG 71 ? ? "O5'" B DG 71 ? ? 1.722 1.593 0.129 0.010 N 198 1 C5 B DG 71 ? ? N7 B DG 71 ? ? 1.340 1.388 -0.048 0.006 N 199 1 "O3'" B DG 71 ? ? P B DG 72 ? ? 1.731 1.607 0.124 0.012 Y 200 1 P B DG 72 ? ? "O5'" B DG 72 ? ? 1.727 1.593 0.134 0.010 N 201 1 C5 B DG 72 ? ? N7 B DG 72 ? ? 1.341 1.388 -0.047 0.006 N 202 1 "O3'" B DG 72 ? ? P B DG 73 ? ? 1.734 1.607 0.127 0.012 Y 203 1 P B DG 73 ? ? "O5'" B DG 73 ? ? 1.725 1.593 0.132 0.010 N 204 1 C5 B DG 73 ? ? N7 B DG 73 ? ? 1.341 1.388 -0.047 0.006 N 205 1 "O3'" B DG 73 ? ? P B DT 74 ? ? 1.732 1.607 0.125 0.012 Y 206 1 P B DT 74 ? ? "O5'" B DT 74 ? ? 1.723 1.593 0.130 0.010 N 207 1 "O3'" B DT 74 ? ? P B DG 75 ? ? 1.730 1.607 0.123 0.012 Y 208 1 P B DG 75 ? ? "O5'" B DG 75 ? ? 1.723 1.593 0.130 0.010 N 209 1 C5 B DG 75 ? ? N7 B DG 75 ? ? 1.341 1.388 -0.047 0.006 N 210 1 "O3'" B DG 75 ? ? P B DG 76 ? ? 1.728 1.607 0.121 0.012 Y 211 1 P B DG 76 ? ? "O5'" B DG 76 ? ? 1.728 1.593 0.135 0.010 N 212 1 C5 B DG 76 ? ? N7 B DG 76 ? ? 1.339 1.388 -0.049 0.006 N 213 1 "O3'" B DG 76 ? ? P B DG 77 ? ? 1.729 1.607 0.122 0.012 Y 214 1 P B DG 77 ? ? "O5'" B DG 77 ? ? 1.724 1.593 0.131 0.010 N 215 1 C5 B DG 77 ? ? N7 B DG 77 ? ? 1.341 1.388 -0.047 0.006 N 216 1 "O3'" B DG 77 ? ? P B DT 78 ? ? 1.731 1.607 0.124 0.012 Y 217 1 P B DT 78 ? ? "O5'" B DT 78 ? ? 1.727 1.593 0.134 0.010 N 218 1 "O3'" B DT 78 ? ? P B DT 79 ? ? 1.732 1.607 0.125 0.012 Y 219 1 P B DT 79 ? ? "O5'" B DT 79 ? ? 1.722 1.593 0.129 0.010 N 220 1 "O3'" B DT 79 ? ? P B DT 80 ? ? 1.732 1.607 0.125 0.012 Y 221 1 P B DT 80 ? ? "O5'" B DT 80 ? ? 1.725 1.593 0.132 0.010 N 222 1 "O3'" B DT 80 ? ? P B DA 81 ? ? 1.724 1.607 0.117 0.012 Y 223 1 P B DA 81 ? ? "O5'" B DA 81 ? ? 1.723 1.593 0.130 0.010 N 224 1 C5 B DA 81 ? ? N7 B DA 81 ? ? 1.342 1.388 -0.046 0.006 N 225 1 C6 B DA 81 ? ? N6 B DA 81 ? ? 1.391 1.335 0.056 0.008 N 226 1 "O3'" B DA 81 ? ? P B DA 82 ? ? 1.722 1.607 0.115 0.012 Y 227 1 P B DA 82 ? ? "O5'" B DA 82 ? ? 1.724 1.593 0.131 0.010 N 228 1 C5 B DA 82 ? ? N7 B DA 82 ? ? 1.342 1.388 -0.046 0.006 N 229 1 C6 B DA 82 ? ? N6 B DA 82 ? ? 1.390 1.335 0.055 0.008 N 230 1 "O3'" B DA 82 ? ? P B DT 83 ? ? 1.733 1.607 0.126 0.012 Y 231 1 P B DT 83 ? ? "O5'" B DT 83 ? ? 1.727 1.593 0.134 0.010 N 232 1 "O3'" B DT 83 ? ? P B DG 84 ? ? 1.734 1.607 0.127 0.012 Y 233 1 P B DG 84 ? ? "O5'" B DG 84 ? ? 1.727 1.593 0.134 0.010 N 234 1 C5 B DG 84 ? ? N7 B DG 84 ? ? 1.342 1.388 -0.046 0.006 N 235 1 "O3'" B DG 84 ? ? P B DC 85 ? ? 1.731 1.607 0.124 0.012 Y 236 1 P B DC 85 ? ? "O5'" B DC 85 ? ? 1.726 1.593 0.133 0.010 N 237 1 C2 B DC 85 ? ? N3 B DC 85 ? ? 1.412 1.353 0.059 0.008 N 238 1 N3 B DC 85 ? ? C4 B DC 85 ? ? 1.286 1.335 -0.049 0.007 N 239 1 "O3'" B DC 85 ? ? P B DG 86 ? ? 1.733 1.607 0.126 0.012 Y 240 1 P B DG 86 ? ? "O5'" B DG 86 ? ? 1.726 1.593 0.133 0.010 N 241 1 C5 B DG 86 ? ? N7 B DG 86 ? ? 1.343 1.388 -0.045 0.006 N 242 1 "O3'" B DG 86 ? ? P B DG 87 ? ? 1.723 1.607 0.116 0.012 Y 243 1 P B DG 87 ? ? "O5'" B DG 87 ? ? 1.724 1.593 0.131 0.010 N 244 1 C5 B DG 87 ? ? N7 B DG 87 ? ? 1.342 1.388 -0.046 0.006 N 245 1 "O3'" B DG 87 ? ? P B DC 88 ? ? 1.733 1.607 0.126 0.012 Y 246 1 P B DC 88 ? ? "O5'" B DC 88 ? ? 1.727 1.593 0.134 0.010 N 247 1 C2 B DC 88 ? ? N3 B DC 88 ? ? 1.410 1.353 0.057 0.008 N 248 1 N3 B DC 88 ? ? C4 B DC 88 ? ? 1.285 1.335 -0.050 0.007 N 249 1 "O3'" B DC 88 ? ? P B DA 89 ? ? 1.734 1.607 0.127 0.012 Y 250 1 P B DA 89 ? ? "O5'" B DA 89 ? ? 1.732 1.593 0.139 0.010 N 251 1 C5 B DA 89 ? ? N7 B DA 89 ? ? 1.343 1.388 -0.045 0.006 N 252 1 C6 B DA 89 ? ? N6 B DA 89 ? ? 1.390 1.335 0.055 0.008 N 253 1 "O3'" B DA 89 ? ? P B DC 90 ? ? 1.733 1.607 0.126 0.012 Y 254 1 P B DC 90 ? ? "O5'" B DC 90 ? ? 1.726 1.593 0.133 0.010 N 255 1 C2 B DC 90 ? ? N3 B DC 90 ? ? 1.408 1.353 0.055 0.008 N 256 1 N3 B DC 90 ? ? C4 B DC 90 ? ? 1.283 1.335 -0.052 0.007 N 257 1 "O3'" B DC 90 ? ? P B DG 91 ? ? 1.724 1.607 0.117 0.012 Y 258 1 P B DG 91 ? ? "O5'" B DG 91 ? ? 1.725 1.593 0.132 0.010 N 259 1 C5 B DG 91 ? ? N7 B DG 91 ? ? 1.341 1.388 -0.047 0.006 N 260 1 "O3'" B DG 91 ? ? P B DC 92 ? ? 1.734 1.607 0.127 0.012 Y 261 1 P B DC 92 ? ? "O5'" B DC 92 ? ? 1.727 1.593 0.134 0.010 N 262 1 C2 B DC 92 ? ? N3 B DC 92 ? ? 1.410 1.353 0.057 0.008 N 263 1 N3 B DC 92 ? ? C4 B DC 92 ? ? 1.284 1.335 -0.051 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.97 108.30 2.67 0.30 N 2 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.67 108.30 4.37 0.30 N 3 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.91 108.30 4.61 0.30 N 4 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.16 108.30 2.86 0.30 N 5 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.02 108.30 2.72 0.30 N 6 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 111.07 108.30 2.77 0.30 N 7 1 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9 A DA 14 ? ? 112.93 108.30 4.63 0.30 N 8 1 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 112.60 108.30 4.30 0.30 N 9 1 N3 A DT 16 ? ? C2 A DT 16 ? ? O2 A DT 16 ? ? 118.67 122.30 -3.63 0.60 N 10 1 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 111.45 108.30 3.15 0.30 N 11 1 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.98 108.30 2.68 0.30 N 12 1 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.60 108.30 2.30 0.30 N 13 1 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 113.82 108.30 5.52 0.30 N 14 1 "O4'" A DT 21 ? ? "C1'" A DT 21 ? ? N1 A DT 21 ? ? 110.81 108.30 2.51 0.30 N 15 1 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 114.04 108.30 5.74 0.30 N 16 1 "O4'" A DT 24 ? ? "C1'" A DT 24 ? ? N1 A DT 24 ? ? 112.27 108.30 3.97 0.30 N 17 1 "O4'" A DT 25 ? ? "C4'" A DT 25 ? ? "C3'" A DT 25 ? ? 98.57 104.50 -5.93 0.40 N 18 1 "O4'" A DT 25 ? ? "C1'" A DT 25 ? ? N1 A DT 25 ? ? 112.34 108.30 4.04 0.30 N 19 1 "O4'" A DT 26 ? ? "C1'" A DT 26 ? ? N1 A DT 26 ? ? 112.06 108.30 3.76 0.30 N 20 1 "O4'" A DT 27 ? ? "C1'" A DT 27 ? ? N1 A DT 27 ? ? 111.30 108.30 3.00 0.30 N 21 1 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.44 108.30 2.14 0.30 N 22 1 "O4'" A DT 29 ? ? "C1'" A DT 29 ? ? N1 A DT 29 ? ? 110.11 108.30 1.81 0.30 N 23 1 "O4'" A DT 31 ? ? "C1'" A DT 31 ? ? N1 A DT 31 ? ? 110.84 108.30 2.54 0.30 N 24 1 "O4'" A DT 33 ? ? "C1'" A DT 33 ? ? N1 A DT 33 ? ? 110.12 108.30 1.82 0.30 N 25 1 "O4'" A DG 37 ? ? "C1'" A DG 37 ? ? N9 A DG 37 ? ? 111.46 108.30 3.16 0.30 N 26 1 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 110.63 108.30 2.33 0.30 N 27 1 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.72 108.30 2.42 0.30 N 28 1 "O4'" A DC 42 ? ? "C1'" A DC 42 ? ? N1 A DC 42 ? ? 111.15 108.30 2.85 0.30 N 29 1 "O4'" A DA 43 ? ? "C1'" A DA 43 ? ? N9 A DA 43 ? ? 110.85 108.30 2.55 0.30 N 30 1 "O4'" A DA 45 ? ? "C1'" A DA 45 ? ? N9 A DA 45 ? ? 112.41 108.30 4.11 0.30 N 31 1 "O4'" A DG 46 ? ? "C1'" A DG 46 ? ? N9 A DG 46 ? ? 111.36 108.30 3.06 0.30 N 32 1 "O4'" B DC 47 ? ? "C1'" B DC 47 ? ? N1 B DC 47 ? ? 110.11 108.30 1.81 0.30 N 33 1 "O4'" B DA 49 ? ? "C1'" B DA 49 ? ? N9 B DA 49 ? ? 111.04 108.30 2.74 0.30 N 34 1 "O4'" B DT 50 ? ? "C1'" B DT 50 ? ? N1 B DT 50 ? ? 110.40 108.30 2.10 0.30 N 35 1 "O4'" B DG 51 ? ? "C1'" B DG 51 ? ? N9 B DG 51 ? ? 110.34 108.30 2.04 0.30 N 36 1 "O4'" B DT 52 ? ? "C1'" B DT 52 ? ? N1 B DT 52 ? ? 110.66 108.30 2.36 0.30 N 37 1 "O4'" B DA 53 ? ? "C4'" B DA 53 ? ? "C3'" B DA 53 ? ? 101.34 104.50 -3.16 0.40 N 38 1 "O4'" B DA 53 ? ? "C1'" B DA 53 ? ? N9 B DA 53 ? ? 111.66 108.30 3.36 0.30 N 39 1 "O4'" B DT 54 ? ? "C1'" B DT 54 ? ? N1 B DT 54 ? ? 110.94 108.30 2.64 0.30 N 40 1 "O4'" B DA 55 ? ? "C1'" B DA 55 ? ? N9 B DA 55 ? ? 110.62 108.30 2.32 0.30 N 41 1 "O4'" B DC 56 ? ? "C1'" B DC 56 ? ? N1 B DC 56 ? ? 111.27 108.30 2.97 0.30 N 42 1 "O4'" B DA 57 ? ? "C1'" B DA 57 ? ? N9 B DA 57 ? ? 111.08 108.30 2.78 0.30 N 43 1 "O4'" B DA 58 ? ? "C1'" B DA 58 ? ? N9 B DA 58 ? ? 110.95 108.30 2.65 0.30 N 44 1 "O4'" B DA 59 ? ? "C1'" B DA 59 ? ? N9 B DA 59 ? ? 111.07 108.30 2.77 0.30 N 45 1 "O4'" B DG 60 ? ? "C1'" B DG 60 ? ? N9 B DG 60 ? ? 112.44 108.30 4.14 0.30 N 46 1 "O4'" B DA 61 ? ? "C1'" B DA 61 ? ? N9 B DA 61 ? ? 111.24 108.30 2.94 0.30 N 47 1 "O4'" B DG 62 ? ? "C1'" B DG 62 ? ? N9 B DG 62 ? ? 111.38 108.30 3.08 0.30 N 48 1 "O4'" B DG 63 ? ? "C1'" B DG 63 ? ? N9 B DG 63 ? ? 112.14 108.30 3.84 0.30 N 49 1 "O4'" B DG 64 ? ? "C1'" B DG 64 ? ? N9 B DG 64 ? ? 111.90 108.30 3.60 0.30 N 50 1 "O4'" B DG 67 ? ? "C1'" B DG 67 ? ? N9 B DG 67 ? ? 110.77 108.30 2.47 0.30 N 51 1 "O4'" B DG 68 ? ? "C1'" B DG 68 ? ? N9 B DG 68 ? ? 111.61 108.30 3.31 0.30 N 52 1 "O4'" B DT 69 ? ? "C1'" B DT 69 ? ? N1 B DT 69 ? ? 111.38 108.30 3.08 0.30 N 53 1 "O4'" B DA 70 ? ? "C1'" B DA 70 ? ? N9 B DA 70 ? ? 111.35 108.30 3.05 0.30 N 54 1 "O4'" B DG 71 ? ? "C1'" B DG 71 ? ? N9 B DG 71 ? ? 110.80 108.30 2.50 0.30 N 55 1 "O4'" B DG 72 ? ? "C1'" B DG 72 ? ? N9 B DG 72 ? ? 111.81 108.30 3.51 0.30 N 56 1 "O4'" B DG 73 ? ? "C1'" B DG 73 ? ? N9 B DG 73 ? ? 111.22 108.30 2.92 0.30 N 57 1 "O4'" B DG 76 ? ? "C1'" B DG 76 ? ? N9 B DG 76 ? ? 112.07 108.30 3.77 0.30 N 58 1 "O4'" B DG 77 ? ? "C1'" B DG 77 ? ? N9 B DG 77 ? ? 112.47 108.30 4.17 0.30 N 59 1 "O4'" B DT 80 ? ? "C1'" B DT 80 ? ? N1 B DT 80 ? ? 111.13 108.30 2.83 0.30 N 60 1 "O4'" B DA 81 ? ? "C1'" B DA 81 ? ? N9 B DA 81 ? ? 112.55 108.30 4.25 0.30 N 61 1 "O4'" B DA 82 ? ? "C1'" B DA 82 ? ? N9 B DA 82 ? ? 110.75 108.30 2.45 0.30 N 62 1 "O4'" B DG 84 ? ? "C1'" B DG 84 ? ? N9 B DG 84 ? ? 110.97 108.30 2.67 0.30 N 63 1 "O4'" B DG 86 ? ? "C1'" B DG 86 ? ? N9 B DG 86 ? ? 112.52 108.30 4.22 0.30 N 64 1 "O4'" B DG 87 ? ? "C1'" B DG 87 ? ? N9 B DG 87 ? ? 111.38 108.30 3.08 0.30 N 65 1 "O4'" B DC 88 ? ? "C1'" B DC 88 ? ? N1 B DC 88 ? ? 110.16 108.30 1.86 0.30 N 66 1 "O4'" B DA 89 ? ? "C1'" B DA 89 ? ? N9 B DA 89 ? ? 110.62 108.30 2.32 0.30 N 67 1 "O4'" B DC 90 ? ? "C1'" B DC 90 ? ? N1 B DC 90 ? ? 111.13 108.30 2.83 0.30 N 68 1 "O4'" B DG 91 ? ? "C1'" B DG 91 ? ? N9 B DG 91 ? ? 110.86 108.30 2.56 0.30 N 69 1 "O4'" B DC 92 ? ? "C1'" B DC 92 ? ? N1 B DC 92 ? ? 110.67 108.30 2.37 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.050 'SIDE CHAIN' 2 1 DC A 7 ? ? 0.082 'SIDE CHAIN' 3 1 DA A 14 ? ? 0.086 'SIDE CHAIN' 4 1 DT A 16 ? ? 0.086 'SIDE CHAIN' 5 1 DT A 20 ? ? 0.104 'SIDE CHAIN' 6 1 DT A 21 ? ? 0.093 'SIDE CHAIN' 7 1 DT A 26 ? ? 0.063 'SIDE CHAIN' 8 1 DT A 33 ? ? 0.057 'SIDE CHAIN' 9 1 DT A 36 ? ? 0.066 'SIDE CHAIN' 10 1 DG B 64 ? ? 0.056 'SIDE CHAIN' # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 8 mM Na2HPO4 'sodium phosphate' 1 2 185 mM KCl 'potassium chloride' 1 3 1 mM ? 'sodium EDTA' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Selected images were dose-weighted and corrected for beam-induced motion.' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 68.54 _em_image_recording.average_exposure_time 0.4 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 12175 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 666328 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 3.3.1 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 3.3.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? ? ? ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? cryoSPARC 3.3.1 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 3.3.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.5 _em_specimen.details 'Sample was monodisperse.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8DUT 'double helix' 8DUT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 45 1_555 0.088 -0.073 -0.018 0.118 -9.307 -1.768 1 A_DC2:DG91_B A 2 ? B 91 ? 19 1 1 A DG 3 1_555 B DC 44 1_555 -0.806 -0.071 0.225 -6.656 -7.949 3.845 2 A_DG3:DC90_B A 3 ? B 90 ? 19 1 1 A DT 4 1_555 B DA 43 1_555 -0.818 0.108 0.382 1.897 -11.568 7.310 3 A_DT4:DA89_B A 4 ? B 89 ? 20 1 1 A DG 5 1_555 B DC 42 1_555 -0.119 -0.056 0.288 0.562 -16.848 0.499 4 A_DG5:DC88_B A 5 ? B 88 ? 19 1 1 A DC 6 1_555 B DG 41 1_555 0.172 -0.037 0.354 -11.834 -16.909 -1.883 5 A_DC6:DG87_B A 6 ? B 87 ? 19 1 1 A DC 7 1_555 B DG 40 1_555 0.597 -0.064 0.197 -13.922 -6.119 2.964 6 A_DC7:DG86_B A 7 ? B 86 ? 19 1 1 A DG 8 1_555 B DC 39 1_555 -0.163 -0.035 0.525 14.636 5.582 -0.731 7 A_DG8:DC85_B A 8 ? B 85 ? 19 1 1 A DC 9 1_555 B DG 38 1_555 0.457 -0.055 0.281 18.355 -9.833 0.315 8 A_DC9:DG84_B A 9 ? B 84 ? 19 1 1 A DA 10 1_555 B DT 37 1_555 -0.205 -0.041 0.228 12.134 -17.558 0.204 9 A_DA10:DT83_B A 10 ? B 83 ? 20 1 1 A DT 11 1_555 B DA 36 1_555 -0.283 0.031 -0.024 2.678 -24.315 -1.247 10 A_DT11:DA82_B A 11 ? B 82 ? 20 1 1 A DT 12 1_555 B DA 35 1_555 -0.198 0.065 -0.025 -7.205 -12.388 5.415 11 A_DT12:DA81_B A 12 ? B 81 ? 20 1 1 A DA 13 1_555 B DT 34 1_555 -0.168 -0.054 -0.354 5.345 -3.770 1.878 12 A_DA13:DT80_B A 13 ? B 80 ? 20 1 1 A DA 14 1_555 B DT 33 1_555 0.081 -0.006 -0.372 17.020 3.576 4.308 13 A_DA14:DT79_B A 14 ? B 79 ? 20 1 1 A DT 15 1_555 B DT 32 1_555 0.613 -1.518 -1.803 -24.823 -34.200 59.433 14 A_DT15:DT78_B A 15 ? B 78 ? 16 1 1 A DT 27 1_555 B DA 24 1_555 0.071 -1.352 -0.107 -3.639 1.300 -162.406 15 A_DT27:DA70_B A 27 ? B 70 ? 21 2 1 B DC 1 1_555 A DG 46 1_555 0.156 -0.044 0.297 12.717 -21.521 -1.838 16 B_DC47:DG46_A B 47 ? A 46 ? 19 1 1 B DT 2 1_555 A DA 45 1_555 -0.334 0.097 0.559 -0.326 -16.903 9.179 17 B_DT48:DA45_A B 48 ? A 45 ? 20 1 1 B DA 3 1_555 A DT 44 1_555 -0.003 0.024 -0.212 -3.267 -25.495 -7.471 18 B_DA49:DT44_A B 49 ? A 44 ? 20 1 1 B DT 4 1_555 A DA 43 1_555 0.027 0.002 0.008 -6.399 -14.514 -0.802 19 B_DT50:DA43_A B 50 ? A 43 ? 20 1 1 B DG 5 1_555 A DC 42 1_555 -0.614 -0.149 0.676 -3.879 -3.239 0.583 20 B_DG51:DC42_A B 51 ? A 42 ? 19 1 1 B DT 6 1_555 A DA 41 1_555 0.169 -0.017 0.577 6.891 -3.691 4.482 21 B_DT52:DA41_A B 52 ? A 41 ? 20 1 1 B DA 7 1_555 A DT 40 1_555 0.441 0.054 0.293 17.593 -19.894 -1.910 22 B_DA53:DT40_A B 53 ? A 40 ? 20 1 1 B DT 8 1_555 A DA 39 1_555 -0.068 -0.016 0.186 7.956 -20.346 1.239 23 B_DT54:DA39_A B 54 ? A 39 ? 20 1 1 B DA 9 1_555 A DT 38 1_555 0.261 0.013 0.108 -8.777 -13.186 -0.469 24 B_DA55:DT38_A B 55 ? A 38 ? 20 1 1 B DC 10 1_555 A DG 37 1_555 0.517 -0.096 0.283 -0.779 -0.751 0.541 25 B_DC56:DG37_A B 56 ? A 37 ? 19 1 1 B DA 11 1_555 A DT 36 1_555 0.181 0.053 0.033 3.609 -12.819 -3.991 26 B_DA57:DT36_A B 57 ? A 36 ? 20 1 1 B DA 12 1_555 A DT 35 1_555 -0.006 -0.009 0.109 -3.104 -13.159 -1.240 27 B_DA58:DT35_A B 58 ? A 35 ? 20 1 1 B DA 13 1_555 A DT 34 1_555 0.265 0.040 -0.178 -10.086 -16.822 -1.740 28 B_DA59:DT34_A B 59 ? A 34 ? 20 1 1 B DG 14 1_555 A DT 33 1_555 -1.618 -0.198 -0.106 -16.478 -32.769 8.338 29 B_DG60:DT33_A B 60 ? A 33 ? 28 1 1 B DA 15 1_555 A DT 32 1_555 0.902 0.173 0.026 -9.696 -0.125 3.744 30 B_DA61:DT32_A B 61 ? A 32 ? 20 1 1 B DG 16 1_555 B DG 29 1_555 -2.073 -2.941 0.400 18.067 -18.073 93.367 31 B_DG62:DG75_B B 62 ? B 75 ? 6 3 1 B DG 17 1_555 B DG 30 1_555 -2.485 -2.932 0.773 -14.755 5.101 91.862 32 B_DG63:DG76_B B 63 ? B 76 ? 6 3 1 B DG 18 1_555 B DG 22 1_555 2.985 2.549 0.063 -6.582 -6.281 -88.518 33 B_DG64:DG68_B B 64 ? B 68 ? 6 3 1 B DG 31 1_555 B DG 27 1_555 -2.587 -2.754 -0.144 5.888 -1.033 91.211 34 B_DG77:DG73_B B 77 ? B 73 ? 6 3 1 B DG 21 1_555 B DG 26 1_555 2.279 2.928 -0.268 2.698 -6.864 -94.164 35 B_DG67:DG72_B B 67 ? B 72 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 45 1_555 A DG 3 1_555 B DC 44 1_555 1.076 0.048 3.333 1.668 3.745 34.833 -0.497 -1.529 3.366 6.228 -2.775 35.066 1 AA_DC2DG3:DC90DG91_BB A 2 ? B 91 ? A 3 ? B 90 ? 1 A DG 3 1_555 B DC 44 1_555 A DT 4 1_555 B DA 43 1_555 -0.716 -0.326 3.120 -1.561 0.628 30.814 -0.730 1.054 3.144 1.180 2.934 30.859 2 AA_DG3DT4:DA89DC90_BB A 3 ? B 90 ? A 4 ? B 89 ? 1 A DT 4 1_555 B DA 43 1_555 A DG 5 1_555 B DC 42 1_555 0.700 -0.673 3.260 2.728 3.444 33.121 -1.738 -0.768 3.222 6.007 -4.759 33.403 3 AA_DT4DG5:DC88DA89_BB A 4 ? B 89 ? A 5 ? B 88 ? 1 A DG 5 1_555 B DC 42 1_555 A DC 6 1_555 B DG 41 1_555 -0.331 -1.291 3.536 -0.015 -1.027 41.569 -1.701 0.464 3.566 -1.447 0.021 41.581 4 AA_DG5DC6:DG87DC88_BB A 5 ? B 88 ? A 6 ? B 87 ? 1 A DC 6 1_555 B DG 41 1_555 A DC 7 1_555 B DG 40 1_555 0.753 0.233 3.358 1.953 -1.230 38.579 0.508 -0.890 3.382 -1.860 -2.953 38.646 5 AA_DC6DC7:DG86DG87_BB A 6 ? B 87 ? A 7 ? B 86 ? 1 A DC 7 1_555 B DG 40 1_555 A DG 8 1_555 B DC 39 1_555 -0.091 -0.633 2.609 -4.104 4.237 14.918 -4.658 -1.984 2.285 15.550 15.062 16.036 6 AA_DC7DG8:DC85DG86_BB A 7 ? B 86 ? A 8 ? B 85 ? 1 A DG 8 1_555 B DC 39 1_555 A DC 9 1_555 B DG 38 1_555 0.496 0.387 3.397 3.889 -2.863 41.312 0.860 -0.270 3.395 -4.041 -5.489 41.581 7 AA_DG8DC9:DG84DC85_BB A 8 ? B 85 ? A 9 ? B 84 ? 1 A DC 9 1_555 B DG 38 1_555 A DA 10 1_555 B DT 37 1_555 -0.740 -0.283 3.322 -2.502 3.639 38.541 -0.879 0.803 3.322 5.491 3.775 38.783 8 AA_DC9DA10:DT83DG84_BB A 9 ? B 84 ? A 10 ? B 83 ? 1 A DA 10 1_555 B DT 37 1_555 A DT 11 1_555 B DA 36 1_555 -0.179 -1.034 3.494 0.134 -2.082 36.785 -1.331 0.304 3.545 -3.297 -0.212 36.842 9 AA_DA10DT11:DA82DT83_BB A 10 ? B 83 ? A 11 ? B 82 ? 1 A DT 11 1_555 B DA 36 1_555 A DT 12 1_555 B DA 35 1_555 0.995 0.206 3.470 3.218 -2.022 40.018 0.546 -1.056 3.522 -2.947 -4.689 40.191 10 AA_DT11DT12:DA81DA82_BB A 11 ? B 82 ? A 12 ? B 81 ? 1 A DT 12 1_555 B DA 35 1_555 A DA 13 1_555 B DT 34 1_555 -0.877 1.562 3.097 -1.474 -2.190 42.485 2.359 1.068 3.044 -3.019 2.031 42.563 11 AA_DT12DA13:DT80DA81_BB A 12 ? B 81 ? A 13 ? B 80 ? 1 A DA 13 1_555 B DT 34 1_555 A DA 14 1_555 B DT 33 1_555 0.048 -0.025 3.194 -2.008 6.603 19.906 -2.777 -0.955 3.009 18.401 5.596 21.057 12 AA_DA13DA14:DT79DT80_BB A 13 ? B 80 ? A 14 ? B 79 ? 1 A DA 14 1_555 B DT 33 1_555 A DT 15 1_555 B DT 32 1_555 2.814 1.147 4.825 17.061 20.518 31.836 -2.332 -0.698 5.437 31.412 -26.119 41.317 13 AA_DA14DT15:DT78DT79_BB A 14 ? B 79 ? A 15 ? B 78 ? 1 B DC 1 1_555 A DG 46 1_555 B DT 2 1_555 A DA 45 1_555 1.285 -0.389 3.516 3.445 -0.861 36.913 -0.486 -1.517 3.625 -1.356 -5.426 37.078 14 BB_DC47DT48:DA45DG46_AA B 47 ? A 46 ? B 48 ? A 45 ? 1 B DT 2 1_555 A DA 45 1_555 B DA 3 1_555 A DT 44 1_555 -2.211 1.130 3.203 -2.612 -7.053 43.595 2.142 2.701 3.113 -9.413 3.485 44.208 15 BB_DT48DA49:DT44DA45_AA B 48 ? A 45 ? B 49 ? A 44 ? 1 B DA 3 1_555 A DT 44 1_555 B DT 4 1_555 A DA 43 1_555 1.118 -0.259 3.295 1.482 0.642 33.745 -0.550 -1.680 3.334 1.106 -2.551 33.782 16 BB_DA49DT50:DA43DT44_AA B 49 ? A 44 ? B 50 ? A 43 ? 1 B DT 4 1_555 A DA 43 1_555 B DG 5 1_555 A DC 42 1_555 0.967 -1.085 3.064 -2.827 2.776 30.873 -2.505 -2.295 2.860 5.189 5.284 31.120 17 BB_DT50DG51:DC42DA43_AA B 50 ? A 43 ? B 51 ? A 42 ? 1 B DG 5 1_555 A DC 42 1_555 B DT 6 1_555 A DA 41 1_555 -0.236 -0.540 3.170 1.953 2.852 28.400 -1.712 0.902 3.079 5.786 -3.962 28.605 18 BB_DG51DT52:DA41DC42_AA B 51 ? A 42 ? B 52 ? A 41 ? 1 B DT 6 1_555 A DA 41 1_555 B DA 7 1_555 A DT 40 1_555 0.207 0.312 3.110 5.287 -6.389 39.705 1.127 0.261 3.029 -9.284 -7.683 40.528 19 BB_DT52DA53:DT40DA41_AA B 52 ? A 41 ? B 53 ? A 40 ? 1 B DA 7 1_555 A DT 40 1_555 B DT 8 1_555 A DA 39 1_555 0.817 -1.301 3.495 0.284 -4.234 33.143 -1.497 -1.369 3.635 -7.384 -0.495 33.406 20 BB_DA53DT54:DA39DT40_AA B 53 ? A 40 ? B 54 ? A 39 ? 1 B DT 8 1_555 A DA 39 1_555 B DA 9 1_555 A DT 38 1_555 -0.839 -0.964 3.556 -3.102 6.545 37.572 -2.355 0.862 3.403 10.047 4.762 38.239 21 BB_DT54DA55:DT38DA39_AA B 54 ? A 39 ? B 55 ? A 38 ? 1 B DA 9 1_555 A DT 38 1_555 B DC 10 1_555 A DG 37 1_555 1.152 0.199 3.187 -1.207 0.274 30.629 0.323 -2.409 3.142 0.518 2.283 30.654 22 BB_DA55DC56:DG37DT38_AA B 55 ? A 38 ? B 56 ? A 37 ? 1 B DC 10 1_555 A DG 37 1_555 B DA 11 1_555 A DT 36 1_555 -0.793 0.300 3.248 1.135 -1.589 35.401 0.722 1.466 3.206 -2.610 -1.865 35.453 23 BB_DC56DA57:DT36DG37_AA B 56 ? A 37 ? B 57 ? A 36 ? 1 B DA 11 1_555 A DT 36 1_555 B DA 12 1_555 A DT 35 1_555 0.504 -1.138 3.543 0.910 -6.308 36.110 -0.845 -0.663 3.694 -10.079 -1.455 36.649 24 BB_DA57DA58:DT35DT36_AA B 57 ? A 36 ? B 58 ? A 35 ? 1 B DA 12 1_555 A DT 35 1_555 B DA 13 1_555 A DT 34 1_555 -0.662 -0.548 3.583 2.103 -5.429 40.755 -0.132 1.192 3.587 -7.747 -3.001 41.151 25 BB_DA58DA59:DT34DT35_AA B 58 ? A 35 ? B 59 ? A 34 ? 1 B DA 13 1_555 A DT 34 1_555 B DG 14 1_555 A DT 33 1_555 0.615 -0.063 3.500 -2.177 7.451 23.171 -2.613 -2.173 3.251 17.918 5.235 24.420 26 BB_DA59DG60:DT33DT34_AA B 59 ? A 34 ? B 60 ? A 33 ? 1 B DG 14 1_555 A DT 33 1_555 B DA 15 1_555 A DT 32 1_555 0.111 0.000 3.457 -1.825 -11.400 51.737 0.778 -0.249 3.382 -12.881 2.062 52.923 27 BB_DG60DA61:DT32DT33_AA B 60 ? A 33 ? B 61 ? A 32 ? 1 B DA 15 1_555 A DT 32 1_555 B DG 16 1_555 B DG 29 1_555 -1.443 1.321 2.985 8.317 -13.523 -19.112 1.526 -0.531 3.501 34.096 20.969 -24.798 28 BB_DA61DG62:DG75DT32_BA B 61 ? A 32 ? B 62 ? B 75 ? 1 B DG 16 1_555 B DG 29 1_555 B DG 17 1_555 B DG 30 1_555 0.104 0.118 3.446 -2.365 2.467 19.466 -0.897 -1.494 3.397 7.225 6.926 19.761 29 BB_DG62DG63:DG76DG75_BB B 62 ? B 75 ? B 63 ? B 76 ? 1 B DG 17 1_555 B DG 30 1_555 B DG 18 1_555 B DG 22 1_555 -1.618 -1.806 3.336 2.310 14.946 119.620 -1.183 0.955 3.172 8.629 -1.333 120.199 30 BB_DG63DG64:DG68DG76_BB B 63 ? B 76 ? B 64 ? B 68 ? 1 B DG 18 1_555 B DG 22 1_555 B DG 31 1_555 B DG 27 1_555 -2.875 -2.555 -0.272 -15.022 17.559 175.749 -1.278 1.439 -0.273 8.785 7.516 175.835 31 BB_DG64DG77:DG73DG68_BB B 64 ? B 68 ? B 77 ? B 73 ? 1 B DG 31 1_555 B DG 27 1_555 B DG 21 1_555 B DG 26 1_555 3.105 3.008 -2.981 1.124 -22.340 -115.952 -1.959 1.808 -2.617 13.110 0.660 -117.308 32 BB_DG77DG67:DG72DG73_BB B 77 ? B 73 ? B 67 ? B 72 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM077422 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? #