HEADER IMMUNE SYSTEM 28-JUL-22 8DVG TITLE STRUCTURE OF KRAS WT(7-16)-HLA-A*03:01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-3 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-304; COMPND 5 SYNONYM: MHC CLASS I ANTIGEN A*3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: VAL-VAL-VAL-GLY-ALA-GLY-GLY-VAL-GLY-LYS; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606 KEYWDS IMMUNOTHERAPY, MHC-I, HLA-A3, KRAS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.M.WRIGHT,M.MILLER,S.B.GABELLI REVDAT 3 25-OCT-23 8DVG 1 REMARK REVDAT 2 06-SEP-23 8DVG 1 JRNL REVDAT 1 19-JUL-23 8DVG 0 JRNL AUTH K.M.WRIGHT,S.R.DINAPOLI,M.S.MILLER,P.AITANA AZURMENDI, JRNL AUTH 2 X.ZHAO,Z.YU,M.CHAKRABARTI,W.SHI,J.DOUGLASS,M.S.HWANG, JRNL AUTH 3 E.H.HSIUE,B.J.MOG,A.H.PEARLMAN,S.PAUL,M.F.KONIG,D.M.PARDOLL, JRNL AUTH 4 C.BETTEGOWDA,N.PAPADOPOULOS,K.W.KINZLER,B.VOGELSTEIN,S.ZHOU, JRNL AUTH 5 S.B.GABELLI JRNL TITL HYDROPHOBIC INTERACTIONS DOMINATE THE RECOGNITION OF A KRAS JRNL TITL 2 G12V NEOANTIGEN. JRNL REF NAT COMMUN V. 14 5063 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37604828 JRNL DOI 10.1038/S41467-023-40821-W REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6480 - 4.6949 1.00 3134 165 0.1873 0.2239 REMARK 3 2 4.6949 - 3.7348 1.00 2959 160 0.1491 0.1606 REMARK 3 3 3.7348 - 3.2652 1.00 2958 135 0.1856 0.2566 REMARK 3 4 3.2652 - 2.9677 1.00 2910 144 0.2158 0.2580 REMARK 3 5 2.9677 - 2.7556 1.00 2901 150 0.2452 0.2994 REMARK 3 6 2.7556 - 2.5940 0.99 2857 152 0.2501 0.2850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3293 REMARK 3 ANGLE : 0.517 4470 REMARK 3 CHIRALITY : 0.041 449 REMARK 3 PLANARITY : 0.003 580 REMARK 3 DIHEDRAL : 15.649 1915 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0159 6.3392 24.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.2166 REMARK 3 T33: 0.2599 T12: 0.0069 REMARK 3 T13: 0.0049 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1080 L22: 1.2638 REMARK 3 L33: 1.9341 L12: 0.0389 REMARK 3 L13: 0.6744 L23: 0.3910 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: 0.0022 S13: -0.0084 REMARK 3 S21: 0.0267 S22: 0.0760 S23: 0.0378 REMARK 3 S31: 0.0935 S32: 0.0724 S33: -0.0365 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9637 16.7365 41.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.3805 REMARK 3 T33: 0.2194 T12: 0.0642 REMARK 3 T13: 0.0034 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.6575 L22: 1.9906 REMARK 3 L33: 1.1028 L12: -1.1862 REMARK 3 L13: 0.9060 L23: -0.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.1092 S13: 0.6890 REMARK 3 S21: 0.4666 S22: -0.0353 S23: -0.6523 REMARK 3 S31: -0.4566 S32: -0.3047 S33: -0.0260 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8331 28.9683 24.3195 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.3644 REMARK 3 T33: 0.5551 T12: 0.0444 REMARK 3 T13: -0.0034 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.4078 L22: 2.5078 REMARK 3 L33: 2.2064 L12: -1.3603 REMARK 3 L13: 0.8300 L23: -0.9445 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.2772 S13: -0.5718 REMARK 3 S21: -0.0670 S22: 0.1216 S23: 0.4954 REMARK 3 S31: 0.2150 S32: -0.5140 S33: -0.0905 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6143 21.3955 11.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.3383 REMARK 3 T33: 0.3895 T12: 0.0612 REMARK 3 T13: -0.0510 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.5595 L22: 6.3609 REMARK 3 L33: 7.0949 L12: 1.0544 REMARK 3 L13: -0.1512 L23: 4.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.1907 S13: -0.4170 REMARK 3 S21: -0.1785 S22: 0.1091 S23: 0.3954 REMARK 3 S31: 0.4600 S32: 0.2537 S33: -0.0140 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2533 42.3258 26.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.3942 REMARK 3 T33: 0.4758 T12: 0.1255 REMARK 3 T13: -0.0050 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 1.3053 L22: 5.3467 REMARK 3 L33: 1.7639 L12: 2.4590 REMARK 3 L13: -0.7163 L23: -2.3398 REMARK 3 S TENSOR REMARK 3 S11: 0.3265 S12: -0.3462 S13: 0.6076 REMARK 3 S21: 1.0044 S22: -0.2628 S23: -0.1259 REMARK 3 S31: -0.8656 S32: 0.0414 S33: -0.1901 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2879 28.2798 14.7144 REMARK 3 T TENSOR REMARK 3 T11: 0.4215 T22: 0.3099 REMARK 3 T33: 0.3561 T12: -0.0352 REMARK 3 T13: -0.0102 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.0044 L22: 5.8483 REMARK 3 L33: 1.7954 L12: 0.4421 REMARK 3 L13: 0.8388 L23: 1.2671 REMARK 3 S TENSOR REMARK 3 S11: -0.1324 S12: -0.0233 S13: -0.0341 REMARK 3 S21: -0.5989 S22: 0.0077 S23: -0.3153 REMARK 3 S31: -0.4001 S32: 0.2728 S33: 0.0901 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0841 36.5026 13.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.6538 T22: 0.4059 REMARK 3 T33: 0.6201 T12: -0.1458 REMARK 3 T13: -0.0095 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 1.8156 L22: 7.0952 REMARK 3 L33: 1.0017 L12: -0.1467 REMARK 3 L13: -0.5920 L23: -2.3570 REMARK 3 S TENSOR REMARK 3 S11: -0.3963 S12: 0.7437 S13: -0.1493 REMARK 3 S21: 0.1388 S22: -0.1980 S23: -1.1180 REMARK 3 S31: -0.6306 S32: 0.7177 S33: 0.3403 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2093 23.0484 19.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.3018 T22: 0.3099 REMARK 3 T33: 0.4481 T12: 0.0091 REMARK 3 T13: -0.0529 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.4092 L22: 6.2203 REMARK 3 L33: 1.3079 L12: -0.6285 REMARK 3 L13: -0.5455 L23: 0.5506 REMARK 3 S TENSOR REMARK 3 S11: 0.0884 S12: -0.1299 S13: 0.1667 REMARK 3 S21: 0.2591 S22: -0.2064 S23: 0.4504 REMARK 3 S31: -0.0720 S32: 0.1514 S33: 0.2187 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3098 47.5524 15.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.8192 T22: 0.6455 REMARK 3 T33: 0.9490 T12: -0.0811 REMARK 3 T13: -0.2285 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 3.3684 L22: 1.8362 REMARK 3 L33: 7.5080 L12: 0.8369 REMARK 3 L13: 0.2240 L23: -3.4353 REMARK 3 S TENSOR REMARK 3 S11: -0.5068 S12: 0.7307 S13: 0.8801 REMARK 3 S21: -0.5682 S22: 0.0471 S23: 0.7466 REMARK 3 S31: -0.8169 S32: -0.8241 S33: 0.4396 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6414 28.2240 5.6651 REMARK 3 T TENSOR REMARK 3 T11: 0.5821 T22: 0.3114 REMARK 3 T33: 0.3693 T12: -0.0206 REMARK 3 T13: 0.0169 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.3163 L22: 4.8791 REMARK 3 L33: 1.4065 L12: -0.1859 REMARK 3 L13: -0.1660 L23: 0.8713 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0757 S13: -0.0803 REMARK 3 S21: -0.1038 S22: 0.0544 S23: -0.2077 REMARK 3 S31: -0.4417 S32: 0.5281 S33: 0.0142 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7239 36.6583 13.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.5862 T22: 0.5091 REMARK 3 T33: 0.5437 T12: 0.1507 REMARK 3 T13: -0.0805 T23: 0.1717 REMARK 3 L TENSOR REMARK 3 L11: 4.8218 L22: 6.8175 REMARK 3 L33: 8.7417 L12: 2.2291 REMARK 3 L13: -0.9217 L23: 3.6224 REMARK 3 S TENSOR REMARK 3 S11: -0.3262 S12: -0.1715 S13: 0.7884 REMARK 3 S21: -0.0398 S22: 0.5393 S23: 0.6337 REMARK 3 S31: -0.0870 S32: -1.4062 S33: -0.3503 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.6497 0.7651 26.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.3250 REMARK 3 T33: 0.2428 T12: -0.0038 REMARK 3 T13: 0.0031 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.9321 L22: 5.7158 REMARK 3 L33: 6.0292 L12: 0.2175 REMARK 3 L13: 2.2328 L23: 2.6618 REMARK 3 S TENSOR REMARK 3 S11: -0.1275 S12: 0.6181 S13: -0.0552 REMARK 3 S21: 0.2213 S22: 0.6178 S23: 0.0789 REMARK 3 S31: 0.6609 S32: 0.2036 S33: -0.2970 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000265856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 19.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.18600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6O9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE 0.1M SODIUM REMARK 280 CACODYLATE PH 6.5 30 % W/V PEG 8,000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 SER A 278 REMARK 465 GLN A 279 REMARK 465 PRO A 280 REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 LEU A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 ILE A 286 REMARK 465 LEU A 287 REMARK 465 ASP A 288 REMARK 465 ALA A 289 REMARK 465 GLN A 290 REMARK 465 LYS A 291 REMARK 465 MET A 292 REMARK 465 VAL A 293 REMARK 465 TRP A 294 REMARK 465 ASN A 295 REMARK 465 HIS A 296 REMARK 465 ARG A 297 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 GLY B 17 REMARK 465 LEU B 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -128.39 60.18 REMARK 500 GLN A 180 35.55 -93.44 REMARK 500 SER A 195 -161.74 -164.53 REMARK 500 TRP B 80 -3.70 81.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25427 RELATED DB: EMDB DBREF 8DVG A 1 280 UNP P04439 1A03_HUMAN 25 304 DBREF 8DVG B 1 119 UNP P61769 B2MG_HUMAN 1 119 DBREF 8DVG C 1 10 PDB 8DVG 8DVG 1 10 SEQADV 8DVG MET A -2 UNP P04439 EXPRESSION TAG SEQADV 8DVG ALA A -1 UNP P04439 EXPRESSION TAG SEQADV 8DVG SER A 0 UNP P04439 EXPRESSION TAG SEQADV 8DVG GLY A 281 UNP P04439 EXPRESSION TAG SEQADV 8DVG SER A 282 UNP P04439 EXPRESSION TAG SEQADV 8DVG LEU A 283 UNP P04439 EXPRESSION TAG SEQADV 8DVG HIS A 284 UNP P04439 EXPRESSION TAG SEQADV 8DVG HIS A 285 UNP P04439 EXPRESSION TAG SEQADV 8DVG ILE A 286 UNP P04439 EXPRESSION TAG SEQADV 8DVG LEU A 287 UNP P04439 EXPRESSION TAG SEQADV 8DVG ASP A 288 UNP P04439 EXPRESSION TAG SEQADV 8DVG ALA A 289 UNP P04439 EXPRESSION TAG SEQADV 8DVG GLN A 290 UNP P04439 EXPRESSION TAG SEQADV 8DVG LYS A 291 UNP P04439 EXPRESSION TAG SEQADV 8DVG MET A 292 UNP P04439 EXPRESSION TAG SEQADV 8DVG VAL A 293 UNP P04439 EXPRESSION TAG SEQADV 8DVG TRP A 294 UNP P04439 EXPRESSION TAG SEQADV 8DVG ASN A 295 UNP P04439 EXPRESSION TAG SEQADV 8DVG HIS A 296 UNP P04439 EXPRESSION TAG SEQADV 8DVG ARG A 297 UNP P04439 EXPRESSION TAG SEQRES 1 A 300 MET ALA SER GLY SER HIS SER MET ARG TYR PHE PHE THR SEQRES 2 A 300 SER VAL SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SEQRES 3 A 300 ALA VAL GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE SEQRES 4 A 300 ASP SER ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA SEQRES 5 A 300 PRO TRP ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLN SEQRES 6 A 300 GLU THR ARG ASN VAL LYS ALA GLN SER GLN THR ASP ARG SEQRES 7 A 300 VAL ASP LEU GLY THR LEU ARG GLY TYR TYR ASN GLN SER SEQRES 8 A 300 GLU ALA GLY SER HIS THR ILE GLN ILE MET TYR GLY CYS SEQRES 9 A 300 ASP VAL GLY SER ASP GLY ARG PHE LEU ARG GLY TYR ARG SEQRES 10 A 300 GLN ASP ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN SEQRES 11 A 300 GLU ASP LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA SEQRES 12 A 300 GLN ILE THR LYS ARG LYS TRP GLU ALA ALA HIS GLU ALA SEQRES 13 A 300 GLU GLN LEU ARG ALA TYR LEU ASP GLY THR CYS VAL GLU SEQRES 14 A 300 TRP LEU ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU SEQRES 15 A 300 GLN ARG THR ASP PRO PRO LYS THR HIS MET THR HIS HIS SEQRES 16 A 300 PRO ILE SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA SEQRES 17 A 300 LEU GLY PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN SEQRES 18 A 300 ARG ASP GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL SEQRES 19 A 300 GLU THR ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP SEQRES 20 A 300 ALA ALA VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR SEQRES 21 A 300 THR CYS HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU SEQRES 22 A 300 THR LEU ARG TRP GLU LEU SER SER GLN PRO GLY SER LEU SEQRES 23 A 300 HIS HIS ILE LEU ASP ALA GLN LYS MET VAL TRP ASN HIS SEQRES 24 A 300 ARG SEQRES 1 B 119 MET SER ARG SER VAL ALA LEU ALA VAL LEU ALA LEU LEU SEQRES 2 B 119 SER LEU SER GLY LEU GLU ALA ILE GLN ARG THR PRO LYS SEQRES 3 B 119 ILE GLN VAL TYR SER ARG HIS PRO ALA GLU ASN GLY LYS SEQRES 4 B 119 SER ASN PHE LEU ASN CYS TYR VAL SER GLY PHE HIS PRO SEQRES 5 B 119 SER ASP ILE GLU VAL ASP LEU LEU LYS ASN GLY GLU ARG SEQRES 6 B 119 ILE GLU LYS VAL GLU HIS SER ASP LEU SER PHE SER LYS SEQRES 7 B 119 ASP TRP SER PHE TYR LEU LEU TYR TYR THR GLU PHE THR SEQRES 8 B 119 PRO THR GLU LYS ASP GLU TYR ALA CYS ARG VAL ASN HIS SEQRES 9 B 119 VAL THR LEU SER GLN PRO LYS ILE VAL LYS TRP ASP ARG SEQRES 10 B 119 ASP MET SEQRES 1 C 10 VAL VAL VAL GLY ALA GLY GLY VAL GLY LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET PEG B 201 7 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HET SO4 B 207 5 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 SO4 13(O4 S 2-) FORMUL 11 PEG C4 H10 O3 FORMUL 18 HOH *111(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 HIS A 151 1 15 HELIX 4 AA4 HIS A 151 ASP A 161 1 11 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O ILE A 95 N SER A 11 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N ASP A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 247 N LEU A 201 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 247 N LEU A 201 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 26 SER B 31 0 SHEET 2 AA5 4 ASN B 41 PHE B 50 -1 O ASN B 44 N TYR B 30 SHEET 3 AA5 4 PHE B 82 PHE B 90 -1 O PHE B 90 N ASN B 41 SHEET 4 AA5 4 GLU B 70 HIS B 71 -1 N GLU B 70 O TYR B 87 SHEET 1 AA6 4 LYS B 26 SER B 31 0 SHEET 2 AA6 4 ASN B 41 PHE B 50 -1 O ASN B 44 N TYR B 30 SHEET 3 AA6 4 PHE B 82 PHE B 90 -1 O PHE B 90 N ASN B 41 SHEET 4 AA6 4 SER B 75 PHE B 76 -1 N SER B 75 O TYR B 83 SHEET 1 AA7 4 GLU B 64 ARG B 65 0 SHEET 2 AA7 4 GLU B 56 LYS B 61 -1 N LYS B 61 O GLU B 64 SHEET 3 AA7 4 TYR B 98 ASN B 103 -1 O ARG B 101 N ASP B 58 SHEET 4 AA7 4 LYS B 111 LYS B 114 -1 O VAL B 113 N CYS B 100 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 45 CYS B 100 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.17 CISPEP 2 HIS B 51 PRO B 52 0 4.24 CRYST1 152.893 152.893 85.195 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006541 0.003776 0.000000 0.00000 SCALE2 0.000000 0.007552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011738 0.00000