HEADER HYDROLASE 29-JUL-22 8DVH TITLE CRYSTAL STRUCTURE OF ATP-DEPENDENT LON PROTEASE FROM BACILLUS TITLE 2 SUBTILLIS (BSLONBA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LON PROTEASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEOLYTIC DOMAIN, RESIDUES 347-552; COMPND 5 SYNONYM: ATP-DEPENDENT PROTEASE LA 2; COMPND 6 EC: 3.4.21.53; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: LON2, LONB, YSXF, BSU28210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-527 KEYWDS ATP-DEPENDENT PROTEASE, CATALYTIC SER-LYS DYAD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEKULA,M.LI,A.GUSTCHINA,A.WLODAWER REVDAT 2 18-OCT-23 8DVH 1 REMARK REVDAT 1 09-NOV-22 8DVH 0 JRNL AUTH A.GUSTCHINA,M.LI,A.G.ANDRIANOVA,A.M.KUDZHAEV,G.T.LOUNTOS, JRNL AUTH 2 B.SEKULA,S.CHERRY,J.E.TROPEA,I.V.SMIRNOV,A.WLODAWER, JRNL AUTH 3 T.V.ROTANOVA JRNL TITL UNIQUE STRUCTURAL FOLD OF LONBA PROTEASE FROM BACILLUS JRNL TITL 2 SUBTILIS, A MEMBER OF A NEWLY IDENTIFIED SUBFAMILY OF LON JRNL TITL 3 PROTEASES. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36232729 JRNL DOI 10.3390/IJMS231911425 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2158 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 4.41000 REMARK 3 B12 (A**2) : -0.68000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2929 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2889 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3958 ; 1.687 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6742 ; 1.351 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 7.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.720 ;25.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;14.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3199 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 348 B 382 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3770 22.8469 40.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.2301 REMARK 3 T33: 0.2995 T12: -0.0111 REMARK 3 T13: -0.0477 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3948 L22: 2.2616 REMARK 3 L33: 2.1118 L12: -0.2313 REMARK 3 L13: -0.0315 L23: -0.5736 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.0119 S13: 0.0047 REMARK 3 S21: -0.0386 S22: -0.0417 S23: 0.7621 REMARK 3 S31: -0.2275 S32: 0.2364 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 383 B 396 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9493 21.9798 44.5764 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.2343 REMARK 3 T33: 0.1564 T12: 0.0004 REMARK 3 T13: -0.0489 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.8816 L22: 0.4804 REMARK 3 L33: 4.4691 L12: -1.1360 REMARK 3 L13: 1.7940 L23: -1.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0487 S13: -0.2075 REMARK 3 S21: 0.0136 S22: -0.0172 S23: 0.0856 REMARK 3 S31: -0.0488 S32: 0.0650 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 397 B 418 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9393 14.9650 45.4497 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.2388 REMARK 3 T33: 0.1704 T12: 0.0093 REMARK 3 T13: -0.0253 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.7212 L22: 0.0982 REMARK 3 L33: 4.4764 L12: 0.5979 REMARK 3 L13: 3.9049 L23: 0.5867 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.1155 S13: 0.0336 REMARK 3 S21: -0.0188 S22: -0.0318 S23: 0.0467 REMARK 3 S31: 0.0888 S32: 0.0778 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 419 B 433 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7388 16.7925 28.1532 REMARK 3 T TENSOR REMARK 3 T11: 0.3265 T22: 0.3161 REMARK 3 T33: 0.0787 T12: 0.0516 REMARK 3 T13: -0.0948 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.6591 L22: 1.3824 REMARK 3 L33: 0.7946 L12: 0.5547 REMARK 3 L13: -0.8172 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.4872 S13: 0.1437 REMARK 3 S21: -0.2254 S22: -0.0471 S23: 0.2768 REMARK 3 S31: 0.1388 S32: 0.0817 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 434 B 506 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4506 14.5961 43.9269 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.2228 REMARK 3 T33: 0.2788 T12: -0.0305 REMARK 3 T13: -0.0489 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.5496 L22: 0.8946 REMARK 3 L33: 0.3507 L12: -0.3043 REMARK 3 L13: -0.3800 L23: -0.3555 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0505 S13: -0.1648 REMARK 3 S21: -0.0111 S22: 0.0800 S23: 0.3780 REMARK 3 S31: -0.0064 S32: 0.0190 S33: -0.0967 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 507 B 535 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6176 7.7297 44.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1308 REMARK 3 T33: 0.6124 T12: -0.0850 REMARK 3 T13: -0.0844 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 4.1371 L22: 1.0935 REMARK 3 L33: 3.3201 L12: -0.5573 REMARK 3 L13: -0.6268 L23: -1.6613 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: 0.3827 S13: -0.6218 REMARK 3 S21: -0.3670 S22: 0.2316 S23: 0.5294 REMARK 3 S31: 0.6721 S32: -0.4170 S33: -0.3432 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6225 -2.3388 47.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.2309 REMARK 3 T33: 0.2140 T12: 0.0019 REMARK 3 T13: -0.0146 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4997 L22: 2.5722 REMARK 3 L33: 4.1876 L12: 0.0920 REMARK 3 L13: 0.5678 L23: -1.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.0623 S13: -0.2214 REMARK 3 S21: 0.1288 S22: 0.0427 S23: 0.3240 REMARK 3 S31: -0.1068 S32: -0.0644 S33: -0.1373 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5668 13.5273 42.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.2411 REMARK 3 T33: 0.1186 T12: -0.0130 REMARK 3 T13: -0.0216 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 3.5943 L22: 1.5434 REMARK 3 L33: 3.3468 L12: 2.2269 REMARK 3 L13: 2.9405 L23: 1.4447 REMARK 3 S TENSOR REMARK 3 S11: -0.1717 S12: 0.1675 S13: -0.1743 REMARK 3 S21: -0.0871 S22: 0.1774 S23: -0.1458 REMARK 3 S31: -0.2998 S32: 0.0658 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 407 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6515 4.6055 36.7799 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2584 REMARK 3 T33: 0.1345 T12: -0.0184 REMARK 3 T13: 0.0159 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 1.1176 L22: 1.6625 REMARK 3 L33: 0.4837 L12: 0.3492 REMARK 3 L13: -0.1857 L23: 0.7678 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: 0.1990 S13: -0.0924 REMARK 3 S21: -0.0995 S22: 0.1523 S23: -0.1494 REMARK 3 S31: -0.0729 S32: -0.0076 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 447 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0812 -10.4553 44.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.1462 REMARK 3 T33: 0.2885 T12: -0.0032 REMARK 3 T13: -0.0367 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 1.2978 L22: 2.4991 REMARK 3 L33: 0.5618 L12: 1.6158 REMARK 3 L13: -0.2809 L23: -0.8331 REMARK 3 S TENSOR REMARK 3 S11: -0.1084 S12: 0.1504 S13: -0.4498 REMARK 3 S21: -0.0890 S22: 0.2462 S23: -0.3533 REMARK 3 S31: 0.0535 S32: -0.1142 S33: -0.1378 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6965 -13.4752 26.8266 REMARK 3 T TENSOR REMARK 3 T11: 0.3602 T22: 0.2309 REMARK 3 T33: 0.3003 T12: -0.1086 REMARK 3 T13: 0.0672 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 1.6769 L22: 0.9829 REMARK 3 L33: 7.0208 L12: 1.1990 REMARK 3 L13: 3.3672 L23: 2.5869 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: 0.0539 S13: 0.0223 REMARK 3 S21: 0.0901 S22: 0.0210 S23: -0.1620 REMARK 3 S31: 0.2746 S32: 0.0610 S33: -0.1942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8DVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000264840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 294057 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 84.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.82700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG400 AT PH 7.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.97500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.97500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.97500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 347 REMARK 465 VAL A 348 REMARK 465 GLU A 349 REMARK 465 PRO A 350 REMARK 465 GLN A 351 REMARK 465 ASN A 548 REMARK 465 LYS A 549 REMARK 465 GLU A 550 REMARK 465 SER A 551 REMARK 465 VAL A 552 REMARK 465 GLY B 347 REMARK 465 PRO B 536 REMARK 465 PRO B 537 REMARK 465 THR B 538 REMARK 465 GLU B 539 REMARK 465 GLN B 540 REMARK 465 LYS B 541 REMARK 465 PRO B 542 REMARK 465 PHE B 543 REMARK 465 HIS B 544 REMARK 465 ILE B 545 REMARK 465 GLU B 546 REMARK 465 ILE B 547 REMARK 465 ASN B 548 REMARK 465 LYS B 549 REMARK 465 GLU B 550 REMARK 465 SER B 551 REMARK 465 VAL B 552 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 445 B26 BO2 A 601 1.47 REMARK 500 OG SER B 445 B26 BO2 B 601 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 380 -113.98 -139.29 REMARK 500 LYS A 460 -28.01 68.55 REMARK 500 ILE A 461 102.54 -46.44 REMARK 500 GLU B 349 146.91 -174.57 REMARK 500 ASP B 380 -108.90 -146.87 REMARK 500 SER B 397 -159.60 -109.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 358 O REMARK 620 2 SER A 445 OG 109.9 REMARK 620 3 THR A 470 OG1 119.7 90.7 REMARK 620 4 HOH A 746 O 97.4 134.7 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 358 O REMARK 620 2 SER B 445 O 160.6 REMARK 620 3 SER B 445 OG 112.7 72.4 REMARK 620 4 THR B 470 OG1 120.7 77.2 88.9 REMARK 620 5 HOH B 730 O 94.0 72.6 138.0 105.2 REMARK 620 N 1 2 3 4 DBREF 8DVH A 347 552 UNP P42425 LON2_BACSU 347 552 DBREF 8DVH B 347 552 UNP P42425 LON2_BACSU 347 552 SEQRES 1 A 206 GLY VAL GLU PRO GLN VAL GLY ILE VAL ASN GLY LEU ALA SEQRES 2 A 206 VAL TYR GLY PRO ASN SER GLY SER LEU LEU GLU ILE GLU SEQRES 3 A 206 VAL SER VAL THR ALA ALA GLN ASP LYS GLY SER ILE ASN SEQRES 4 A 206 ILE THR GLY ILE ALA GLU GLU GLU SER ILE GLY SER GLN SEQRES 5 A 206 SER LYS SER ILE ARG ARG LYS SER MET ALA LYS GLY SER SEQRES 6 A 206 VAL GLU ASN VAL LEU THR VAL LEU ARG THR MET GLY MET SEQRES 7 A 206 LYS PRO SER ASP TYR ASP ILE HIS ILE ASN PHE PRO GLY SEQRES 8 A 206 GLY ILE PRO ILE ASP GLY PRO SER ALA GLY ILE ALA MET SEQRES 9 A 206 ALA ALA GLY ILE PHE SER ALA ILE HIS LYS ILE PRO ILE SEQRES 10 A 206 ASP ASN THR VAL ALA MET THR GLY GLU ILE SER LEU ASN SEQRES 11 A 206 GLY LEU VAL LYS PRO ILE GLY GLY VAL ILE PRO LYS ILE SEQRES 12 A 206 LYS ALA ALA LYS GLN SER GLY ALA LYS LYS VAL ILE ILE SEQRES 13 A 206 PRO TYR GLU ASN GLN GLN ALA ILE LEU LYS GLN ILE ASP SEQRES 14 A 206 GLY ILE GLU ILE ILE ALA VAL LYS THR PHE GLN GLU VAL SEQRES 15 A 206 LEU ASP GLU ILE LEU VAL ASN PRO PRO THR GLU GLN LYS SEQRES 16 A 206 PRO PHE HIS ILE GLU ILE ASN LYS GLU SER VAL SEQRES 1 B 206 GLY VAL GLU PRO GLN VAL GLY ILE VAL ASN GLY LEU ALA SEQRES 2 B 206 VAL TYR GLY PRO ASN SER GLY SER LEU LEU GLU ILE GLU SEQRES 3 B 206 VAL SER VAL THR ALA ALA GLN ASP LYS GLY SER ILE ASN SEQRES 4 B 206 ILE THR GLY ILE ALA GLU GLU GLU SER ILE GLY SER GLN SEQRES 5 B 206 SER LYS SER ILE ARG ARG LYS SER MET ALA LYS GLY SER SEQRES 6 B 206 VAL GLU ASN VAL LEU THR VAL LEU ARG THR MET GLY MET SEQRES 7 B 206 LYS PRO SER ASP TYR ASP ILE HIS ILE ASN PHE PRO GLY SEQRES 8 B 206 GLY ILE PRO ILE ASP GLY PRO SER ALA GLY ILE ALA MET SEQRES 9 B 206 ALA ALA GLY ILE PHE SER ALA ILE HIS LYS ILE PRO ILE SEQRES 10 B 206 ASP ASN THR VAL ALA MET THR GLY GLU ILE SER LEU ASN SEQRES 11 B 206 GLY LEU VAL LYS PRO ILE GLY GLY VAL ILE PRO LYS ILE SEQRES 12 B 206 LYS ALA ALA LYS GLN SER GLY ALA LYS LYS VAL ILE ILE SEQRES 13 B 206 PRO TYR GLU ASN GLN GLN ALA ILE LEU LYS GLN ILE ASP SEQRES 14 B 206 GLY ILE GLU ILE ILE ALA VAL LYS THR PHE GLN GLU VAL SEQRES 15 B 206 LEU ASP GLU ILE LEU VAL ASN PRO PRO THR GLU GLN LYS SEQRES 16 B 206 PRO PHE HIS ILE GLU ILE ASN LYS GLU SER VAL HET BO2 A 601 28 HET NA A 602 1 HET BO2 B 601 28 HET NA B 602 1 HETNAM BO2 N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2- HETNAM 2 BO2 YLCARBONYL)-L-PHENYLALANINAMIDE HETNAM NA SODIUM ION HETSYN BO2 BORTEZOMIB FORMUL 3 BO2 2(C19 H25 B N4 O4) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *159(H2 O) HELIX 1 AA1 SER A 406 MET A 422 1 17 HELIX 2 AA2 LYS A 425 SER A 427 5 3 HELIX 3 AA3 ALA A 446 LYS A 460 1 15 HELIX 4 AA4 GLY A 484 SER A 495 1 12 HELIX 5 AA5 GLU A 505 GLN A 507 5 3 HELIX 6 AA6 GLN A 508 ILE A 514 5 7 HELIX 7 AA7 THR A 524 LEU A 533 1 10 HELIX 8 AA8 SER B 406 MET B 422 1 17 HELIX 9 AA9 LYS B 425 SER B 427 5 3 HELIX 10 AB1 ALA B 446 LYS B 460 1 15 HELIX 11 AB2 GLY B 484 SER B 495 1 12 HELIX 12 AB3 GLU B 505 GLN B 507 5 3 HELIX 13 AB4 GLN B 508 ILE B 514 5 7 HELIX 14 AB5 THR B 524 LEU B 533 1 10 SHEET 1 AA1 4 GLY A 353 TYR A 361 0 SHEET 2 AA1 4 SER A 365 ALA A 377 -1 O LEU A 369 N GLY A 357 SHEET 3 AA1 4 TYR A 429 ASN A 434 -1 O HIS A 432 N SER A 374 SHEET 4 AA1 4 SER A 383 THR A 387 1 N SER A 383 O ILE A 431 SHEET 1 AA2 4 SER A 401 LYS A 405 0 SHEET 2 AA2 4 GLU A 392 GLY A 396 -1 N GLU A 393 O ARG A 404 SHEET 3 AA2 4 LYS B 400 LYS B 405 -1 O SER B 401 N SER A 394 SHEET 4 AA2 4 GLU B 392 GLY B 396 -1 N GLU B 393 O ARG B 404 SHEET 1 AA3 3 VAL A 467 MET A 469 0 SHEET 2 AA3 3 LYS A 499 PRO A 503 1 O ILE A 501 N ALA A 468 SHEET 3 AA3 3 GLU A 518 VAL A 522 1 O ILE A 520 N VAL A 500 SHEET 1 AA4 2 GLU A 472 ILE A 473 0 SHEET 2 AA4 2 VAL A 479 LYS A 480 -1 O LYS A 480 N GLU A 472 SHEET 1 AA5 4 ILE B 354 VAL B 360 0 SHEET 2 AA5 4 GLY B 366 ALA B 377 -1 O LEU B 369 N GLY B 357 SHEET 3 AA5 4 TYR B 429 ASN B 434 -1 O HIS B 432 N SER B 374 SHEET 4 AA5 4 SER B 383 THR B 387 1 N ASN B 385 O ILE B 433 SHEET 1 AA6 3 VAL B 467 MET B 469 0 SHEET 2 AA6 3 LYS B 499 PRO B 503 1 O ILE B 501 N ALA B 468 SHEET 3 AA6 3 GLU B 518 VAL B 522 1 O ILE B 520 N VAL B 500 SHEET 1 AA7 2 GLU B 472 ILE B 473 0 SHEET 2 AA7 2 VAL B 479 LYS B 480 -1 O LYS B 480 N GLU B 472 LINK O LEU A 358 NA NA A 602 1555 1555 2.48 LINK OG SER A 445 NA NA A 602 1555 1555 2.74 LINK OG1 THR A 470 NA NA A 602 1555 1555 2.71 LINK NA NA A 602 O HOH A 746 1555 1555 2.71 LINK O LEU B 358 NA NA B 602 1555 1555 2.52 LINK O SER B 445 NA NA B 602 1555 1555 3.06 LINK OG SER B 445 NA NA B 602 1555 1555 2.77 LINK OG1 THR B 470 NA NA B 602 1555 1555 2.77 LINK NA NA B 602 O HOH B 730 1555 1555 2.63 CRYST1 89.892 89.892 83.950 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011124 0.006423 0.000000 0.00000 SCALE2 0.000000 0.012845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011912 0.00000