HEADER VIRAL PROTEIN 29-JUL-22 8DVO TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ001023044 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 18-OCT-23 8DVO 1 REMARK REVDAT 2 11-OCT-23 8DVO 1 JRNL REVDAT 1 28-SEP-22 8DVO 0 JRNL AUTH M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ001023044 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.6900 - 3.7000 0.97 2941 151 0.1894 0.2356 REMARK 3 2 3.7000 - 2.9400 1.00 2872 147 0.2691 0.3353 REMARK 3 3 2.9400 - 2.5600 0.99 2806 146 0.3070 0.3371 REMARK 3 4 2.5600 - 2.3300 1.00 2811 180 0.2968 0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.357 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.701 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1565 REMARK 3 ANGLE : 0.727 2115 REMARK 3 CHIRALITY : 0.045 219 REMARK 3 PLANARITY : 0.004 266 REMARK 3 DIHEDRAL : 7.754 226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9116 28.2607 -3.1500 REMARK 3 T TENSOR REMARK 3 T11: 0.7340 T22: 0.9700 REMARK 3 T33: 0.7755 T12: -0.1868 REMARK 3 T13: 0.0888 T23: -0.2722 REMARK 3 L TENSOR REMARK 3 L11: 3.8288 L22: 8.6075 REMARK 3 L33: 4.9970 L12: 1.3030 REMARK 3 L13: 1.2691 L23: -2.6530 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -1.7264 S13: 0.9805 REMARK 3 S21: 1.4094 S22: 0.3511 S23: 0.4322 REMARK 3 S31: 0.4811 S32: -0.1354 S33: -0.3165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0707 37.6097 -9.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.5585 T22: 0.7677 REMARK 3 T33: 0.8138 T12: -0.0476 REMARK 3 T13: -0.0037 T23: -0.2869 REMARK 3 L TENSOR REMARK 3 L11: 1.2375 L22: 3.0166 REMARK 3 L33: 4.8629 L12: 0.3068 REMARK 3 L13: 0.7603 L23: -1.6132 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: -0.1813 S13: 0.0074 REMARK 3 S21: 0.4975 S22: -0.1859 S23: 0.0560 REMARK 3 S31: -0.7010 S32: -0.2482 S33: 0.3306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3752 51.6226 -21.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.6912 T22: 0.9981 REMARK 3 T33: 0.7592 T12: -0.0094 REMARK 3 T13: -0.2409 T23: -0.1793 REMARK 3 L TENSOR REMARK 3 L11: 1.7510 L22: 4.9982 REMARK 3 L33: 2.6696 L12: -1.8258 REMARK 3 L13: 0.1681 L23: -0.6040 REMARK 3 S TENSOR REMARK 3 S11: -0.2418 S12: 0.6893 S13: 0.6458 REMARK 3 S21: -0.3744 S22: -0.1357 S23: -0.0901 REMARK 3 S31: -0.5954 S32: -0.4234 S33: 0.3593 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1702 36.5329 -25.6155 REMARK 3 T TENSOR REMARK 3 T11: 0.9359 T22: 1.3458 REMARK 3 T33: 0.9338 T12: -0.1558 REMARK 3 T13: -0.2306 T23: -0.2826 REMARK 3 L TENSOR REMARK 3 L11: 1.4727 L22: 2.4372 REMARK 3 L33: 2.4218 L12: -0.5930 REMARK 3 L13: 1.0462 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.5288 S12: 0.4399 S13: -0.4665 REMARK 3 S21: -1.0378 S22: 0.6032 S23: 0.6668 REMARK 3 S31: 0.1564 S32: -0.8884 S33: -0.1123 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0905 40.3620 -28.2957 REMARK 3 T TENSOR REMARK 3 T11: 1.0230 T22: 1.0603 REMARK 3 T33: 0.8845 T12: -0.0813 REMARK 3 T13: -0.2429 T23: -0.4548 REMARK 3 L TENSOR REMARK 3 L11: 4.4878 L22: 7.0389 REMARK 3 L33: 4.2578 L12: 1.8490 REMARK 3 L13: -1.4008 L23: -2.8717 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.8785 S13: -0.2372 REMARK 3 S21: -0.2241 S22: 0.0938 S23: 1.5257 REMARK 3 S31: -0.7083 S32: -0.7844 S33: 0.0242 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4749 33.9868 -30.1937 REMARK 3 T TENSOR REMARK 3 T11: 0.8556 T22: 1.4024 REMARK 3 T33: 0.8031 T12: -0.2285 REMARK 3 T13: -0.1358 T23: -0.3405 REMARK 3 L TENSOR REMARK 3 L11: 1.4726 L22: 9.4134 REMARK 3 L33: 4.6436 L12: -2.0085 REMARK 3 L13: -0.6048 L23: -1.8613 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: 0.0417 S13: -0.3140 REMARK 3 S21: -2.0174 S22: -0.1307 S23: 1.0226 REMARK 3 S31: 0.2909 S32: -0.2722 S33: 0.1552 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8347 26.3397 -18.8115 REMARK 3 T TENSOR REMARK 3 T11: 0.7176 T22: 0.6744 REMARK 3 T33: 0.7262 T12: -0.1442 REMARK 3 T13: 0.0778 T23: -0.2935 REMARK 3 L TENSOR REMARK 3 L11: 3.8517 L22: 7.2454 REMARK 3 L33: 6.6280 L12: 2.3216 REMARK 3 L13: -2.5591 L23: -4.3226 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0403 S13: -0.8808 REMARK 3 S21: 0.3050 S22: -0.8241 S23: -0.5915 REMARK 3 S31: 0.1684 S32: 0.4780 S33: 0.7517 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4191 22.1959 -13.1863 REMARK 3 T TENSOR REMARK 3 T11: 0.9621 T22: 1.0044 REMARK 3 T33: 1.2297 T12: -0.4550 REMARK 3 T13: 0.0957 T23: -0.3351 REMARK 3 L TENSOR REMARK 3 L11: 0.8643 L22: 4.4796 REMARK 3 L33: 5.0724 L12: -1.9280 REMARK 3 L13: 0.4512 L23: -2.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.8660 S13: -1.4169 REMARK 3 S21: -0.6944 S22: 0.2821 S23: 2.0807 REMARK 3 S31: 1.4439 S32: -1.6554 S33: -0.1311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12070 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 74.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.03350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.04500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.03350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.04500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.03350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.04500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.03350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.04500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.03350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.04500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.03350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.04500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.03350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.04500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.03350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.03350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 158 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 124 45.94 -109.94 REMARK 500 LYS A 139 20.66 48.25 REMARK 500 GLU A 141 -160.15 54.55 REMARK 500 LYS A 142 -64.26 55.39 REMARK 500 THR A 143 108.64 -51.22 REMARK 500 MET A 155 112.17 -166.09 REMARK 500 THR A 162 -67.30 64.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 110.5 REMARK 620 3 GLU A 119 OE2 167.8 80.9 REMARK 620 4 ILE A 120 O 90.1 96.2 83.9 REMARK 620 5 U0I A 203 O01 72.7 176.0 96.2 86.1 REMARK 620 6 U0I A 203 O33 95.4 93.4 88.3 166.4 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 75.5 REMARK 620 3 U0I A 203 O33 108.3 82.6 REMARK 620 4 U0I A 203 O31 98.1 161.2 82.7 REMARK 620 5 HOH A 304 O 171.3 96.2 67.7 89.1 REMARK 620 N 1 2 3 4 DBREF 8DVO A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 8DVO A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 8DVO MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 8DVO GLY A 51 UNP C6H0Y9 LINKER SEQADV 8DVO GLY A 52 UNP C6H0Y9 LINKER SEQADV 8DVO SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET U0I A 203 33 HET QQ4 A 204 41 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM U0I 5-HYDROXY-N-[2-(4-HYDROXY-3-METHOXYPHENYL)ETHYL]-6-OXO- HETNAM 2 U0I 2-{[2-(TRIFLUOROMETHYL)PHENYL]METHYL}-1,6- HETNAM 3 U0I DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 U0I C22 H20 F3 N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *36(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.27 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.17 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.11 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.25 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.27 LINK O ILE A 120 MN MN A 201 1555 1555 2.26 LINK MN MN A 201 O01 U0I A 203 1555 1555 2.06 LINK MN MN A 201 O33 U0I A 203 1555 1555 2.17 LINK MN MN A 202 O33 U0I A 203 1555 1555 2.12 LINK MN MN A 202 O31 U0I A 203 1555 1555 1.95 LINK MN MN A 202 O HOH A 304 1555 1555 2.11 CRYST1 90.067 90.067 134.090 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007458 0.00000