HEADER HYDROLASE/DNA 31-JUL-22 8DW7 TITLE DNA GLYCOSYLASE MUTY VARIANT N146S IN COMPLEX WITH DNA CONTAINING THE TITLE 2 TRANSITION STATE ANALOG 1N PAIRED WITH D(8-OXO-G) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE DNA GLYCOSYLASE; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: OXOG:A-SPECIFIC ADENINE GLYCOSYLASE; COMPND 5 EC: 3.2.2.31; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*GP*TP*CP*CP*AP*(NR1)P*GP*TP*CP*T)-3'); COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: MUTY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_COMMON: 32; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, DNA REPAIR, TRANSITION STATE, BASE EXCISION KEYWDS 2 REPAIR, HYDROLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DEMIR,L.P.RUSSELBURG,M.P.HORVATH,S.S.DAVID REVDAT 4 25-OCT-23 8DW7 1 REMARK REVDAT 3 03-MAY-23 8DW7 1 JRNL REVDAT 2 14-DEC-22 8DW7 1 REMARK REVDAT 1 30-NOV-22 8DW7 0 JRNL AUTH M.DEMIR,L.P.RUSSELBURG,W.J.LIN,C.H.TRASVINA-ARENAS,B.HUANG, JRNL AUTH 2 P.K.YUEN,M.P.HORVATH,S.S.DAVID JRNL TITL STRUCTURAL SNAPSHOTS OF BASE EXCISION BY THE JRNL TITL 2 CANCER-ASSOCIATED VARIANT MUTY N146S REVEAL A RETAINING JRNL TITL 3 MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 51 1034 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36631987 JRNL DOI 10.1093/NAR/GKAC1246 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 127731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 3194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.8000 - 5.5700 0.96 5538 136 0.1941 0.2228 REMARK 3 2 5.5700 - 4.4200 0.94 5362 143 0.1617 0.1916 REMARK 3 3 4.4200 - 3.8600 0.94 5428 136 0.1521 0.1491 REMARK 3 4 3.8600 - 3.5100 0.96 5415 170 0.1702 0.2136 REMARK 3 5 3.5100 - 3.2600 0.96 5514 131 0.1743 0.2422 REMARK 3 6 3.2600 - 3.0700 0.95 5506 138 0.2009 0.2463 REMARK 3 7 3.0700 - 2.9100 0.96 5510 149 0.2014 0.2330 REMARK 3 8 2.9100 - 2.7900 0.96 5499 167 0.2183 0.2764 REMARK 3 9 2.7900 - 2.6800 0.96 5521 129 0.2147 0.2202 REMARK 3 10 2.6800 - 2.5900 0.97 5557 146 0.2337 0.2866 REMARK 3 11 2.5900 - 2.5100 0.94 5460 142 0.2356 0.2804 REMARK 3 12 2.5100 - 2.4300 0.96 5497 123 0.2431 0.3061 REMARK 3 13 2.4300 - 2.3700 0.94 5378 159 0.2439 0.2568 REMARK 3 14 2.3700 - 2.3100 0.96 5553 129 0.2507 0.3147 REMARK 3 15 2.3100 - 2.2600 0.94 5440 136 0.2577 0.2966 REMARK 3 16 2.2600 - 2.2100 0.96 5484 156 0.3121 0.3820 REMARK 3 17 2.2100 - 2.1700 0.94 5502 123 0.2905 0.3337 REMARK 3 18 2.1700 - 2.1300 0.95 5361 108 0.3072 0.3152 REMARK 3 19 2.1300 - 2.0900 0.93 5476 149 0.3286 0.3430 REMARK 3 20 2.0900 - 2.0500 0.91 5170 134 0.3362 0.3665 REMARK 3 21 2.0500 - 2.0200 0.91 5272 134 0.3639 0.3638 REMARK 3 22 2.0200 - 1.9900 0.90 5199 136 0.3706 0.4035 REMARK 3 23 1.9900 - 1.9600 0.86 4895 120 0.3846 0.3789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.338 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.823 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 6476 REMARK 3 ANGLE : 1.463 9014 REMARK 3 CHIRALITY : 0.087 1020 REMARK 3 PLANARITY : 0.013 1004 REMARK 3 DIHEDRAL : 18.403 2352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 5:228 OR RESID 401 OR RESID REMARK 3 403)) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8034 6.0194 6.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.3828 REMARK 3 T33: 0.4906 T12: -0.0110 REMARK 3 T13: 0.0113 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 1.2814 L22: 1.1263 REMARK 3 L33: 2.3090 L12: -0.1377 REMARK 3 L13: 0.3382 L23: 0.2820 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.0017 S13: 0.0605 REMARK 3 S21: -0.0275 S22: -0.0293 S23: 0.0379 REMARK 3 S31: 0.0614 S32: -0.1854 S33: -0.0074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND (RESID 229:359)) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5882 -2.6159 34.2689 REMARK 3 T TENSOR REMARK 3 T11: 0.6960 T22: 0.6792 REMARK 3 T33: 0.6627 T12: 0.0369 REMARK 3 T13: -0.1946 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.4510 L22: 1.7055 REMARK 3 L33: 1.4592 L12: -0.0684 REMARK 3 L13: -0.0070 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: -0.4389 S13: -0.2187 REMARK 3 S21: 0.5477 S22: 0.0381 S23: -0.3353 REMARK 3 S31: 0.3369 S32: 0.3231 S33: -0.1736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN D AND (RESID 4:228 OR RESID 401 OR RESID REMARK 3 403)) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7813 -42.5109 6.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.3276 T22: 0.3948 REMARK 3 T33: 0.3961 T12: -0.0134 REMARK 3 T13: -0.0246 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.9242 L22: 1.5620 REMARK 3 L33: 2.2127 L12: -0.2506 REMARK 3 L13: -0.3121 L23: -0.5813 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0821 S13: -0.0678 REMARK 3 S21: 0.0248 S22: -0.0446 S23: -0.1158 REMARK 3 S31: -0.0727 S32: 0.1596 S33: -0.0028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND (RESID 229:360)) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7713 -33.5728 33.2389 REMARK 3 T TENSOR REMARK 3 T11: 0.6891 T22: 0.6865 REMARK 3 T33: 0.4300 T12: 0.0126 REMARK 3 T13: 0.1223 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.9056 L22: 1.8304 REMARK 3 L33: 1.2337 L12: -0.5820 REMARK 3 L13: -0.2694 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.5404 S13: 0.0932 REMARK 3 S21: 0.5456 S22: 0.0632 S23: 0.1869 REMARK 3 S31: -0.0327 S32: -0.2795 S33: -0.0245 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND (RESID 1:11)) OR (CHAIN C AND (RESID REMARK 3 12:22)) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3035 -0.9969 11.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.4438 T22: 0.3826 REMARK 3 T33: 0.5149 T12: 0.0357 REMARK 3 T13: -0.0334 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 1.0590 L22: 2.0248 REMARK 3 L33: 0.8399 L12: 0.1704 REMARK 3 L13: 0.2211 L23: 0.1592 REMARK 3 S TENSOR REMARK 3 S11: 0.1738 S12: 0.0608 S13: -0.1825 REMARK 3 S21: -0.0505 S22: -0.2613 S23: -0.1691 REMARK 3 S31: 0.1526 S32: 0.1461 S33: 0.1023 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN E AND (RESID 1:11)) OR (CHAIN F AND (RESID REMARK 3 12:22)) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1229 -35.4604 11.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.3954 REMARK 3 T33: 0.4192 T12: 0.0338 REMARK 3 T13: -0.0008 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.6662 L22: 2.6414 REMARK 3 L33: 1.2405 L12: -0.1267 REMARK 3 L13: -0.2838 L23: 0.2242 REMARK 3 S TENSOR REMARK 3 S11: 0.1945 S12: 0.0551 S13: 0.1162 REMARK 3 S21: -0.1176 S22: -0.3523 S23: 0.1878 REMARK 3 S31: -0.2078 S32: -0.1937 S33: 0.1587 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11585 REMARK 200 MONOCHROMATOR : SI(111) KHOZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 72.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.140 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.0890 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6U7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CALCIUM ACETATE, ETHYLENE REMARK 280 GLYCOL, TRIS.HCL, B-MERCAPTOETHANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.13K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 249 REMARK 465 ASP A 274 REMARK 465 GLY A 275 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 VAL A 362 REMARK 465 ARG A 363 REMARK 465 ARG A 364 REMARK 465 PRO A 365 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 3 REMARK 465 GLY D 275 REMARK 465 ALA D 276 REMARK 465 GLN D 289 REMARK 465 TYR D 290 REMARK 465 GLY D 291 REMARK 465 GLY D 324 REMARK 465 GLY D 325 REMARK 465 PRO D 326 REMARK 465 GLY D 361 REMARK 465 VAL D 362 REMARK 465 ARG D 363 REMARK 465 ARG D 364 REMARK 465 PRO D 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 ARG A 15 NE CZ NH1 NH2 REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 ARG A 34 CD NE CZ NH1 NH2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 109 CD CE NZ REMARK 470 GLU A 116 CD OE1 OE2 REMARK 470 LYS A 121 CE NZ REMARK 470 ASP A 159 OD2 REMARK 470 LYS A 168 CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 219 CD OE1 OE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 GLN A 289 CG CD OE1 NE2 REMARK 470 TYR A 290 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 298 CD OE1 OE2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 GLU A 338 CD OE1 OE2 REMARK 470 LYS A 340 CE NZ REMARK 470 LYS A 356 CE NZ REMARK 470 DT C 12 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT C 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 12 C7 C6 REMARK 470 GLU D 4 CB CG CD OE1 OE2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 ARG D 7 CD NE CZ NH1 NH2 REMARK 470 LYS D 32 CD CE NZ REMARK 470 GLN D 60 CD OE1 NE2 REMARK 470 ARG D 64 NE CZ NH1 NH2 REMARK 470 ASP D 73 CG OD1 OD2 REMARK 470 ASP D 75 CG OD1 OD2 REMARK 470 GLU D 76 CG CD OE1 OE2 REMARK 470 ASP D 77 CG OD1 OD2 REMARK 470 LYS D 109 CD CE NZ REMARK 470 GLU D 116 CG CD OE1 OE2 REMARK 470 ARG D 201 NE CZ NH1 NH2 REMARK 470 ARG D 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 219 CD OE1 OE2 REMARK 470 GLU D 223 CD OE1 OE2 REMARK 470 GLU D 224 CG CD OE1 OE2 REMARK 470 LYS D 228 CG CD CE NZ REMARK 470 MET D 229 SD CE REMARK 470 LYS D 230 CG CD CE NZ REMARK 470 LYS D 231 CG CD CE NZ REMARK 470 ASP D 247 CG OD1 OD2 REMARK 470 GLU D 248 CG CD OE1 OE2 REMARK 470 ARG D 250 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 277 CG OD1 OD2 REMARK 470 LYS D 279 CG CD CE NZ REMARK 470 GLU D 280 CG CD OE1 OE2 REMARK 470 GLU D 283 CG CD OE1 OE2 REMARK 470 GLN D 284 CG CD OE1 NE2 REMARK 470 GLU D 288 CG CD OE1 OE2 REMARK 470 GLN D 293 CG CD OE1 NE2 REMARK 470 GLU D 295 CG CD OE1 OE2 REMARK 470 GLU D 298 CD OE1 OE2 REMARK 470 ARG D 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 329 CG CD OE1 OE2 REMARK 470 ASP D 337 CG OD1 OD2 REMARK 470 LYS D 340 CG CD CE NZ REMARK 470 LYS D 356 CD CE NZ REMARK 470 DT F 12 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT F 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 12 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 101 HE ARG D 105 1.45 REMARK 500 HE22 GLN D 215 O HOH D 501 1.53 REMARK 500 OD2 ASP A 16 HH TYR A 213 1.59 REMARK 500 OG SER D 308 H7 8OG E 6 1.59 REMARK 500 OP2 DA E 2 O HOH E 201 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 165 OD2 ASP D 112 2655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 1 C5 DA B 1 N7 0.054 REMARK 500 DG B 3 N7 DG B 3 C8 -0.049 REMARK 500 DA B 4 O3' DA B 4 C3' -0.039 REMARK 500 DC B 5 O3' DC B 5 C3' -0.059 REMARK 500 DT B 7 C6 DT B 7 N1 -0.050 REMARK 500 DG B 9 C5 DG B 9 N7 -0.055 REMARK 500 DC B 11 N1 DC B 11 C6 -0.042 REMARK 500 DG C 13 N3 DG C 13 C4 -0.050 REMARK 500 DG C 13 C6 DG C 13 N1 -0.056 REMARK 500 DT C 14 N3 DT C 14 C4 -0.061 REMARK 500 DC C 15 O3' DC C 15 C3' -0.037 REMARK 500 DG C 19 N3 DG C 19 C4 -0.055 REMARK 500 DG C 19 C6 DG C 19 O6 0.079 REMARK 500 DT C 20 O3' DT C 20 C3' 0.081 REMARK 500 DT C 20 C2 DT C 20 N3 -0.053 REMARK 500 DC C 21 C5' DC C 21 C4' 0.059 REMARK 500 DC C 21 N3 DC C 21 C4 -0.064 REMARK 500 DT C 22 C2 DT C 22 N3 0.052 REMARK 500 DA E 1 O5' DA E 1 C5' 0.106 REMARK 500 DA E 1 C6 DA E 1 N1 0.046 REMARK 500 DG E 3 P DG E 3 O5' 0.095 REMARK 500 DG E 3 C6 DG E 3 N1 -0.053 REMARK 500 DG E 3 N7 DG E 3 C8 -0.048 REMARK 500 DG E 3 N9 DG E 3 C4 -0.067 REMARK 500 DA E 4 C2' DA E 4 C1' 0.078 REMARK 500 DA E 4 O4' DA E 4 C1' 0.074 REMARK 500 DA E 4 C5 DA E 4 N7 -0.048 REMARK 500 DC E 5 O3' DC E 5 C3' -0.043 REMARK 500 DG E 8 N3 DG E 8 C4 0.049 REMARK 500 DG E 9 O4' DG E 9 C1' 0.081 REMARK 500 DG E 9 C6 DG E 9 N1 -0.044 REMARK 500 DG E 9 C5 DG E 9 N7 -0.052 REMARK 500 DA E 10 N9 DA E 10 C4 0.044 REMARK 500 DG F 13 C6 DG F 13 N1 -0.044 REMARK 500 DT F 14 P DT F 14 O5' 0.069 REMARK 500 DC F 15 C2 DC F 15 O2 -0.072 REMARK 500 DC F 16 O3' DC F 16 C3' -0.049 REMARK 500 DC F 16 C4 DC F 16 N4 -0.062 REMARK 500 DT F 20 C2 DT F 20 N3 -0.057 REMARK 500 DC F 21 N3 DC F 21 C4 -0.064 REMARK 500 DT F 22 C5 DT F 22 C7 -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 2 O5' - P - OP2 ANGL. DEV. = -8.5 DEGREES REMARK 500 DC B 5 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DC B 5 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT B 7 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC B 11 O5' - P - OP1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DC C 15 OP1 - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DC C 15 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA C 17 C3' - O3' - P ANGL. DEV. = 12.6 DEGREES REMARK 500 NR1 C 18 O3' - P - OP1 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG C 19 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 21 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DA E 2 O5' - P - OP2 ANGL. DEV. = -11.7 DEGREES REMARK 500 DG E 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA E 4 OP1 - P - OP2 ANGL. DEV. = 10.4 DEGREES REMARK 500 DC E 5 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT E 7 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT E 7 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG E 8 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 9 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC E 11 O3' - P - OP2 ANGL. DEV. = 9.7 DEGREES REMARK 500 DT F 14 OP1 - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DT F 14 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT F 14 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC F 16 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA F 17 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DG F 19 O5' - P - OP1 ANGL. DEV. = 11.4 DEGREES REMARK 500 DT F 22 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 88 71.93 36.75 REMARK 500 ASN A 182 78.44 -151.10 REMARK 500 VAL A 197 -66.97 -136.86 REMARK 500 TYR D 88 69.19 36.99 REMARK 500 ASN D 182 75.52 -152.31 REMARK 500 VAL D 197 -62.18 -127.37 REMARK 500 SER D 204 57.95 -94.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 118 O REMARK 620 2 SER A 118 OG 80.9 REMARK 620 3 VAL A 123 O 91.6 93.1 REMARK 620 4 HOH A 548 O 156.2 75.4 91.5 REMARK 620 5 HOH C 107 O 65.3 143.8 76.1 138.1 REMARK 620 6 HOH C 108 O 132.4 138.3 107.6 68.4 77.4 REMARK 620 7 GLU D 181 OE2 155.8 107.7 65.8 40.8 99.2 54.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 SER D 118 O 16.8 REMARK 620 3 SER D 118 OG 17.2 2.1 REMARK 620 4 VAL D 123 O 15.7 1.1 2.3 REMARK 620 5 HOH D 516 O 17.0 1.4 3.5 2.0 REMARK 620 6 HOH D 529 O 17.9 1.9 0.9 2.5 3.2 REMARK 620 7 HOH F 108 O 18.6 1.9 3.1 3.0 1.9 2.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 SF4 A 401 S1 116.5 REMARK 620 3 SF4 A 401 S2 112.0 104.8 REMARK 620 4 SF4 A 401 S4 113.1 105.4 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 205 SG REMARK 620 2 SF4 A 401 S1 109.1 REMARK 620 3 SF4 A 401 S3 115.2 105.2 REMARK 620 4 SF4 A 401 S4 118.3 104.5 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 SF4 A 401 S2 116.9 REMARK 620 3 SF4 A 401 S3 114.5 105.4 REMARK 620 4 SF4 A 401 S4 109.8 105.5 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 214 SG REMARK 620 2 SF4 A 401 S1 109.6 REMARK 620 3 SF4 A 401 S2 118.0 106.5 REMARK 620 4 SF4 A 401 S3 114.2 103.7 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 198 SG REMARK 620 2 SF4 D 401 S1 117.8 REMARK 620 3 SF4 D 401 S2 117.1 102.7 REMARK 620 4 SF4 D 401 S4 112.0 101.2 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 205 SG REMARK 620 2 SF4 D 401 S1 107.3 REMARK 620 3 SF4 D 401 S3 112.4 104.0 REMARK 620 4 SF4 D 401 S4 122.0 104.3 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 208 SG REMARK 620 2 SF4 D 401 S2 119.5 REMARK 620 3 SF4 D 401 S3 116.8 105.2 REMARK 620 4 SF4 D 401 S4 106.7 103.4 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 214 SG REMARK 620 2 SF4 D 401 S1 109.5 REMARK 620 3 SF4 D 401 S2 117.0 106.6 REMARK 620 4 SF4 D 401 S3 115.8 104.0 103.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DVP RELATED DB: PDB DBREF 8DW7 A 1 365 UNP P83847 MUTY_GEOSE 1 365 DBREF 8DW7 B 1 11 PDB 8DW7 8DW7 1 11 DBREF 8DW7 C 12 22 PDB 8DW7 8DW7 12 22 DBREF 8DW7 D 1 365 UNP P83847 MUTY_GEOSE 1 365 DBREF 8DW7 E 1 11 PDB 8DW7 8DW7 1 11 DBREF 8DW7 F 12 22 PDB 8DW7 8DW7 12 22 SEQADV 8DW7 SER A 146 UNP P83847 ASN 146 ENGINEERED MUTATION SEQADV 8DW7 SER D 146 UNP P83847 ASN 146 ENGINEERED MUTATION SEQRES 1 A 365 MET THR ARG GLU THR GLU ARG PHE PRO ALA ARG GLU PHE SEQRES 2 A 365 GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG GLU ARG ARG SEQRES 3 A 365 ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO TYR LYS VAL SEQRES 4 A 365 TRP VAL SER GLU VAL MET LEU GLN GLN THR ARG VAL GLU SEQRES 5 A 365 THR VAL ILE PRO TYR PHE GLU GLN PHE ILE ASP ARG PHE SEQRES 6 A 365 PRO THR LEU GLU ALA LEU ALA ASP ALA ASP GLU ASP GLU SEQRES 7 A 365 VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR TYR SER ARG SEQRES 8 A 365 VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU VAL LYS THR SEQRES 9 A 365 ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO ASP GLU PHE SEQRES 10 A 365 SER ARG LEU LYS GLY VAL GLY PRO TYR THR VAL GLY ALA SEQRES 11 A 365 VAL LEU SER LEU ALA TYR GLY VAL PRO GLU PRO ALA VAL SEQRES 12 A 365 ASP GLY SER VAL MET ARG VAL LEU SER ARG LEU PHE LEU SEQRES 13 A 365 VAL THR ASP ASP ILE ALA LYS PRO SER THR ARG LYS ARG SEQRES 14 A 365 PHE GLU GLN ILE VAL ARG GLU ILE MET ALA TYR GLU ASN SEQRES 15 A 365 PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU LEU GLY ALA SEQRES 16 A 365 LEU VAL CYS THR PRO ARG ARG PRO SER CYS LEU LEU CYS SEQRES 17 A 365 PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA GLU GLY VAL SEQRES 18 A 365 ALA GLU GLU LEU PRO VAL LYS MET LYS LYS THR ALA VAL SEQRES 19 A 365 LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU ALA ASP ASP SEQRES 20 A 365 GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SER THR GLY SEQRES 21 A 365 LEU LEU ALA ASN LEU TRP GLU PHE PRO SER CYS GLU THR SEQRES 22 A 365 ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU GLN MET VAL SEQRES 23 A 365 GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU THR GLU PRO SEQRES 24 A 365 ILE VAL SER PHE GLU HIS ALA PHE SER HIS LEU VAL TRP SEQRES 25 A 365 GLN LEU THR VAL PHE PRO GLY ARG LEU VAL HIS GLY GLY SEQRES 26 A 365 PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO GLU ASP GLU SEQRES 27 A 365 LEU LYS ALA TYR ALA PHE PRO VAL SER HIS GLN ARG VAL SEQRES 28 A 365 TRP ARG GLU TYR LYS GLU TRP ALA SER GLY VAL ARG ARG SEQRES 29 A 365 PRO SEQRES 1 B 11 DA DA DG DA DC 8OG DT DG DG DA DC SEQRES 1 C 11 DT DG DT DC DC DA NR1 DG DT DC DT SEQRES 1 D 365 MET THR ARG GLU THR GLU ARG PHE PRO ALA ARG GLU PHE SEQRES 2 D 365 GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG GLU ARG ARG SEQRES 3 D 365 ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO TYR LYS VAL SEQRES 4 D 365 TRP VAL SER GLU VAL MET LEU GLN GLN THR ARG VAL GLU SEQRES 5 D 365 THR VAL ILE PRO TYR PHE GLU GLN PHE ILE ASP ARG PHE SEQRES 6 D 365 PRO THR LEU GLU ALA LEU ALA ASP ALA ASP GLU ASP GLU SEQRES 7 D 365 VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR TYR SER ARG SEQRES 8 D 365 VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU VAL LYS THR SEQRES 9 D 365 ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO ASP GLU PHE SEQRES 10 D 365 SER ARG LEU LYS GLY VAL GLY PRO TYR THR VAL GLY ALA SEQRES 11 D 365 VAL LEU SER LEU ALA TYR GLY VAL PRO GLU PRO ALA VAL SEQRES 12 D 365 ASP GLY SER VAL MET ARG VAL LEU SER ARG LEU PHE LEU SEQRES 13 D 365 VAL THR ASP ASP ILE ALA LYS PRO SER THR ARG LYS ARG SEQRES 14 D 365 PHE GLU GLN ILE VAL ARG GLU ILE MET ALA TYR GLU ASN SEQRES 15 D 365 PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU LEU GLY ALA SEQRES 16 D 365 LEU VAL CYS THR PRO ARG ARG PRO SER CYS LEU LEU CYS SEQRES 17 D 365 PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA GLU GLY VAL SEQRES 18 D 365 ALA GLU GLU LEU PRO VAL LYS MET LYS LYS THR ALA VAL SEQRES 19 D 365 LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU ALA ASP ASP SEQRES 20 D 365 GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SER THR GLY SEQRES 21 D 365 LEU LEU ALA ASN LEU TRP GLU PHE PRO SER CYS GLU THR SEQRES 22 D 365 ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU GLN MET VAL SEQRES 23 D 365 GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU THR GLU PRO SEQRES 24 D 365 ILE VAL SER PHE GLU HIS ALA PHE SER HIS LEU VAL TRP SEQRES 25 D 365 GLN LEU THR VAL PHE PRO GLY ARG LEU VAL HIS GLY GLY SEQRES 26 D 365 PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO GLU ASP GLU SEQRES 27 D 365 LEU LYS ALA TYR ALA PHE PRO VAL SER HIS GLN ARG VAL SEQRES 28 D 365 TRP ARG GLU TYR LYS GLU TRP ALA SER GLY VAL ARG ARG SEQRES 29 D 365 PRO SEQRES 1 E 11 DA DA DG DA DC 8OG DT DG DG DA DC SEQRES 1 F 11 DT DG DT DC DC DA NR1 DG DT DC DT HET 8OG B 6 34 HET NR1 C 18 21 HET 8OG E 6 34 HET NR1 F 18 21 HET SF4 A 401 8 HET EDO A 402 10 HET CA A 403 1 HET TRS B 101 20 HET SF4 D 401 8 HET EDO D 402 10 HET CA D 403 1 HET TRS E 101 20 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM NR1 (3R,4R)-3-HYDROXY-4-[(PHOSPHONOOXY)METHYL]PYRROLIDINIUM HETNAM SF4 IRON/SULFUR CLUSTER HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 8OG 2(C10 H14 N5 O8 P) FORMUL 3 NR1 2(C5 H13 N O5 P 1+) FORMUL 7 SF4 2(FE4 S4) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 9 CA 2(CA 2+) FORMUL 10 TRS 2(C4 H12 N O3 1+) FORMUL 15 HOH *190(H2 O) HELIX 1 AA1 PRO A 9 ARG A 25 1 17 HELIX 2 AA2 LEU A 28 LYS A 32 5 5 HELIX 3 AA3 ASP A 35 GLN A 47 1 13 HELIX 4 AA4 ARG A 50 PHE A 65 1 16 HELIX 5 AA5 THR A 67 ALA A 74 1 8 HELIX 6 AA6 ASP A 75 GLU A 84 1 10 HELIX 7 AA7 TYR A 89 TYR A 106 1 18 HELIX 8 AA8 ASP A 113 ARG A 119 1 7 HELIX 9 AA9 GLY A 124 GLY A 137 1 14 HELIX 10 AB1 ASP A 144 PHE A 155 1 12 HELIX 11 AB2 LYS A 163 MET A 178 1 16 HELIX 12 AB3 ASN A 182 VAL A 197 1 16 HELIX 13 AB4 SER A 204 CYS A 208 5 5 HELIX 14 AB5 VAL A 210 TYR A 213 5 4 HELIX 15 AB6 CYS A 214 GLY A 220 1 7 HELIX 16 AB7 VAL A 221 LEU A 225 5 5 HELIX 17 AB8 ASP A 277 GLN A 289 1 13 HELIX 18 AB9 PRO A 335 TYR A 342 5 8 HELIX 19 AC1 PRO A 345 ALA A 359 1 15 HELIX 20 AC2 PRO D 9 ARG D 25 1 17 HELIX 21 AC3 LEU D 28 LYS D 32 5 5 HELIX 22 AC4 ASP D 35 LEU D 46 1 12 HELIX 23 AC5 ARG D 50 PHE D 65 1 16 HELIX 24 AC6 THR D 67 ALA D 74 1 8 HELIX 25 AC7 ASP D 75 GLU D 84 1 10 HELIX 26 AC8 TYR D 89 GLY D 107 1 19 HELIX 27 AC9 ASP D 113 ARG D 119 1 7 HELIX 28 AD1 GLY D 124 GLY D 137 1 14 HELIX 29 AD2 ASP D 144 PHE D 155 1 12 HELIX 30 AD3 LYS D 163 MET D 178 1 16 HELIX 31 AD4 ASN D 182 VAL D 197 1 16 HELIX 32 AD5 SER D 204 CYS D 208 5 5 HELIX 33 AD6 VAL D 210 TYR D 213 5 4 HELIX 34 AD7 CYS D 214 GLY D 220 1 7 HELIX 35 AD8 VAL D 221 LEU D 225 5 5 HELIX 36 AD9 GLY D 278 GLU D 288 1 11 HELIX 37 AE1 ASP D 337 TYR D 342 5 6 HELIX 38 AE2 PRO D 345 SER D 360 1 16 SHEET 1 AA1 4 SER A 270 GLU A 272 0 SHEET 2 AA1 4 LYS A 235 ALA A 245 -1 N ALA A 240 O CYS A 271 SHEET 3 AA1 4 LEU A 310 HIS A 323 1 O THR A 315 N VAL A 241 SHEET 4 AA1 4 LEU A 292 LEU A 296 -1 N GLU A 295 O ARG A 320 SHEET 1 AA2 4 SER A 270 GLU A 272 0 SHEET 2 AA2 4 LYS A 235 ALA A 245 -1 N ALA A 240 O CYS A 271 SHEET 3 AA2 4 LEU A 310 HIS A 323 1 O THR A 315 N VAL A 241 SHEET 4 AA2 4 VAL A 301 ALA A 306 -1 N HIS A 305 O TRP A 312 SHEET 1 AA3 3 TRP A 266 GLU A 267 0 SHEET 2 AA3 3 VAL A 251 LYS A 255 -1 N ARG A 254 O GLU A 267 SHEET 3 AA3 3 TYR A 331 ALA A 334 -1 O ARG A 332 N ILE A 253 SHEET 1 AA4 4 SER D 270 GLU D 272 0 SHEET 2 AA4 4 LYS D 235 ALA D 245 -1 N ALA D 240 O CYS D 271 SHEET 3 AA4 4 LEU D 310 VAL D 322 1 O VAL D 311 N VAL D 237 SHEET 4 AA4 4 GLN D 293 LEU D 296 -1 N GLU D 295 O ARG D 320 SHEET 1 AA5 4 SER D 270 GLU D 272 0 SHEET 2 AA5 4 LYS D 235 ALA D 245 -1 N ALA D 240 O CYS D 271 SHEET 3 AA5 4 LEU D 310 VAL D 322 1 O VAL D 311 N VAL D 237 SHEET 4 AA5 4 VAL D 301 ALA D 306 -1 N PHE D 303 O LEU D 314 SHEET 1 AA6 3 TRP D 266 GLU D 267 0 SHEET 2 AA6 3 ARG D 250 LYS D 255 -1 N ARG D 254 O GLU D 267 SHEET 3 AA6 3 TYR D 331 PRO D 335 -1 O ALA D 334 N VAL D 251 LINK O3' DC B 5 P 8OG B 6 1555 1555 1.59 LINK O3' 8OG B 6 P DT B 7 1555 1555 1.58 LINK O3' DA C 17 P NR1 C 18 1555 1555 1.56 LINK O3' NR1 C 18 P DG C 19 1555 1555 1.62 LINK O3' DC E 5 P 8OG E 6 1555 1555 1.58 LINK O3' 8OG E 6 P DT E 7 1555 1555 1.58 LINK O3' DA F 17 P NR1 F 18 1555 1555 1.54 LINK O3' NR1 F 18 P DG F 19 1555 1555 1.59 LINK O SER A 118 CA CA A 403 1555 1555 2.31 LINK OG SER A 118 CA CA A 403 1555 1555 2.58 LINK O VAL A 123 CA CA A 403 1555 1555 2.31 LINK OE2 GLU A 181 CA CA D 403 1555 2555 2.58 LINK SG CYS A 198 FE3 SF4 A 401 1555 1555 2.28 LINK SG CYS A 205 FE2 SF4 A 401 1555 1555 2.51 LINK SG CYS A 208 FE1 SF4 A 401 1555 1555 2.20 LINK SG CYS A 214 FE4 SF4 A 401 1555 1555 2.26 LINK CA CA A 403 O HOH A 548 1555 1555 2.44 LINK CA CA A 403 O HOH C 107 1555 1555 2.60 LINK CA CA A 403 O HOH C 108 1555 1555 2.59 LINK CA CA A 403 OE2 GLU D 181 2645 1555 2.57 LINK O SER D 118 CA CA D 403 1555 1555 2.37 LINK OG SER D 118 CA CA D 403 1555 1555 2.40 LINK O VAL D 123 CA CA D 403 1555 1555 2.35 LINK SG CYS D 198 FE3 SF4 D 401 1555 1555 2.18 LINK SG CYS D 205 FE2 SF4 D 401 1555 1555 2.44 LINK SG CYS D 208 FE1 SF4 D 401 1555 1555 2.35 LINK SG CYS D 214 FE4 SF4 D 401 1555 1555 2.31 LINK CA CA D 403 O HOH D 516 1555 1555 2.45 LINK CA CA D 403 O HOH D 529 1555 1555 2.42 LINK CA CA D 403 O HOH F 108 1555 1555 2.52 CISPEP 1 LEU A 225 PRO A 226 0 5.38 CISPEP 2 GLU A 329 PRO A 330 0 8.95 CISPEP 3 LEU D 225 PRO D 226 0 7.77 CISPEP 4 GLU D 329 PRO D 330 0 13.35 CRYST1 48.890 137.210 74.160 90.00 101.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020454 0.000000 0.003976 0.00000 SCALE2 0.000000 0.007288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013737 0.00000