HEADER HYDROLASE/DNA 01-AUG-22 8DWF TITLE GLYCOSYLASE MUTY VARIANT E43S IN COMPLEX WITH DNA CONTAINING D(8-OXO- TITLE 2 G) PAIRED WITH SUBSTRATE ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE DNA GLYCOSYLASE; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: OXOG:A-SPECIFIC ADENINE GLYCOSYLASE; COMPND 5 EC: 3.2.2.31; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3'); COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: MUTY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, DNA REPAIR, BASE EXCISION REPAIR, HYDROLASE, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.P.RUSSELBURG,M.DEMIR,S.S.DAVID,M.P.HORVATH REVDAT 2 22-MAY-24 8DWF 1 REMARK REVDAT 1 09-AUG-23 8DWF 0 JRNL AUTH L.P.RUSSELBURG,M.DEMIR,K.CEDENO,S.S.DAVID,M.P.HORVATH JRNL TITL STRUCTURAL BASIS FOR BASE ENGAGEMENT AND STEREOCHEMISTRY JRNL TITL 2 REVEALED BY ALTERATION OF CATALYTIC RESIDUE GLU43 IN DNA JRNL TITL 3 REPAIR GLYCOSYLASE MUTY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 57938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.0000 - 5.7800 0.98 5146 126 0.1836 0.1911 REMARK 3 2 5.7800 - 4.5900 0.99 5137 142 0.1676 0.2083 REMARK 3 3 4.5900 - 4.0100 1.00 5203 141 0.1524 0.1980 REMARK 3 4 4.0100 - 3.6400 0.99 5154 146 0.1844 0.2733 REMARK 3 5 3.6400 - 3.3800 0.99 5155 132 0.2006 0.2673 REMARK 3 6 3.3800 - 3.1800 0.99 5162 129 0.2322 0.2972 REMARK 3 7 3.1800 - 3.0200 0.99 5151 135 0.2554 0.2866 REMARK 3 8 3.0200 - 2.8900 0.99 5156 134 0.2851 0.4076 REMARK 3 9 2.8900 - 2.7800 0.98 5106 162 0.3154 0.3672 REMARK 3 10 2.7800 - 2.6800 0.98 5084 130 0.3278 0.3621 REMARK 3 11 2.6800 - 2.6000 0.95 4978 129 0.3446 0.3657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.477 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 6562 REMARK 3 ANGLE : 1.260 9133 REMARK 3 CHIRALITY : 0.066 1023 REMARK 3 PLANARITY : 0.011 1019 REMARK 3 DIHEDRAL : 18.036 2405 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 6:228 OR RESID 401 OR RESID REMARK 3 403)) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4977 6.6905 6.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.3951 REMARK 3 T33: 0.4431 T12: -0.0132 REMARK 3 T13: 0.0253 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.7891 L22: 0.8396 REMARK 3 L33: 1.1615 L12: -0.3404 REMARK 3 L13: 0.1467 L23: -0.3308 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0028 S13: 0.0603 REMARK 3 S21: -0.0124 S22: 0.0162 S23: 0.0110 REMARK 3 S31: 0.0910 S32: -0.1319 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND (RESID 229:359 OR RESID 404)) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0692 -1.5812 34.5145 REMARK 3 T TENSOR REMARK 3 T11: 0.6214 T22: 0.5265 REMARK 3 T33: 0.5025 T12: 0.0877 REMARK 3 T13: -0.0960 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.5728 L22: 0.2441 REMARK 3 L33: 0.2244 L12: 0.1263 REMARK 3 L13: -0.1204 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.1927 S13: 0.1055 REMARK 3 S21: 0.2500 S22: 0.0907 S23: -0.0722 REMARK 3 S31: 0.2077 S32: 0.1231 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN D AND (RESID 4:228 OR RESID 401 OR RESID REMARK 3 403)) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0171 -41.8528 6.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.3451 T22: 0.3873 REMARK 3 T33: 0.3950 T12: -0.0010 REMARK 3 T13: -0.0160 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.8451 L22: 0.5220 REMARK 3 L33: 1.2731 L12: -0.1227 REMARK 3 L13: -0.1611 L23: 0.2471 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: 0.0193 S13: -0.0715 REMARK 3 S21: 0.0357 S22: -0.0338 S23: -0.0708 REMARK 3 S31: -0.1244 S32: 0.0269 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND (RESID 229:360 OR RESID 404)) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2971 -33.1867 33.5689 REMARK 3 T TENSOR REMARK 3 T11: 0.6239 T22: 0.5692 REMARK 3 T33: 0.4056 T12: -0.0016 REMARK 3 T13: 0.1460 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.4840 L22: 0.5737 REMARK 3 L33: 0.3106 L12: 0.0469 REMARK 3 L13: -0.2682 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1232 S13: 0.0466 REMARK 3 S21: 0.2461 S22: 0.0116 S23: 0.1170 REMARK 3 S31: -0.0414 S32: -0.2218 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ((CHAIN B AND RESID 1:11) OR (CHAIN C AND RESID REMARK 3 12:22)) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8137 -0.0224 11.7533 REMARK 3 T TENSOR REMARK 3 T11: 0.4934 T22: 0.4601 REMARK 3 T33: 0.4743 T12: 0.0242 REMARK 3 T13: -0.0370 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.2918 L22: -0.0093 REMARK 3 L33: 0.1613 L12: 0.0621 REMARK 3 L13: -0.2057 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.2642 S12: 0.0715 S13: -0.0157 REMARK 3 S21: -0.1006 S22: -0.3387 S23: -0.0125 REMARK 3 S31: 0.2535 S32: 0.0974 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ((CHAIN E AND RESID 1:11) OR (CHAIN F AND RESID REMARK 3 12:22)) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6964 -34.9477 11.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.5303 T22: 0.5031 REMARK 3 T33: 0.5453 T12: 0.0494 REMARK 3 T13: -0.0081 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.3400 L22: 0.0190 REMARK 3 L33: 0.2186 L12: -0.0909 REMARK 3 L13: -0.0144 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.3207 S12: 0.0711 S13: 0.1934 REMARK 3 S21: 0.1318 S22: -0.4447 S23: 0.1942 REMARK 3 S31: -0.2474 S32: -0.1744 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11583 REMARK 200 MONOCHROMATOR : WATER-COOLED FLAT DOUBLE SI(111) REMARK 200 KHOZU MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.580 REMARK 200 R MERGE (I) : 0.19100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.57 REMARK 200 R MERGE FOR SHELL (I) : 2.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6U7T REMARK 200 REMARK 200 REMARK: YELLOW, ROD, RECTANGULAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CALCIUM ACETATE, ETHYLENE REMARK 280 GLYCOL, TRIS.HCL, BETA-MERCAPTOETHANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.95000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 ASP A 274 REMARK 465 GLY A 275 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 VAL A 362 REMARK 465 ARG A 363 REMARK 465 ARG A 364 REMARK 465 PRO A 365 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 3 REMARK 465 ASP D 274 REMARK 465 GLY D 275 REMARK 465 ALA D 276 REMARK 465 TYR D 290 REMARK 465 GLY D 291 REMARK 465 GLY D 324 REMARK 465 GLY D 325 REMARK 465 PRO D 326 REMARK 465 GLY D 361 REMARK 465 VAL D 362 REMARK 465 ARG D 363 REMARK 465 ARG D 364 REMARK 465 PRO D 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 TYR A 290 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 DT C 12 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT C 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 12 C7 C6 REMARK 470 GLU D 4 CG CD OE1 OE2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 ARG D 7 CD NE CZ NH1 NH2 REMARK 470 ARG D 25 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 27 CG OD1 OD2 REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 GLN D 60 CD OE1 NE2 REMARK 470 GLU D 76 CG CD OE1 OE2 REMARK 470 ASP D 77 CG OD1 OD2 REMARK 470 LYS D 109 CG CD CE NZ REMARK 470 GLU D 116 CG CD OE1 OE2 REMARK 470 LYS D 168 CD CE NZ REMARK 470 GLU D 219 CD OE1 OE2 REMARK 470 GLU D 224 CG CD OE1 OE2 REMARK 470 LYS D 231 CG CD CE NZ REMARK 470 LYS D 279 CG CD CE NZ REMARK 470 GLU D 280 CG CD OE1 OE2 REMARK 470 LYS D 281 CG CD CE NZ REMARK 470 GLU D 283 CG CD OE1 OE2 REMARK 470 GLN D 284 CG CD OE1 NE2 REMARK 470 GLU D 288 CG CD OE1 OE2 REMARK 470 GLN D 289 CG CD OE1 NE2 REMARK 470 GLN D 293 CG CD OE1 NE2 REMARK 470 GLU D 295 CG CD OE1 OE2 REMARK 470 GLU D 298 CG CD OE1 OE2 REMARK 470 ARG D 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 328 CG CD OE1 OE2 REMARK 470 GLU D 329 CG CD OE1 OE2 REMARK 470 ASP D 337 CG OD1 OD2 REMARK 470 LYS D 340 CG CD CE NZ REMARK 470 LYS D 356 CD CE NZ REMARK 470 DT F 12 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT F 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 12 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 308 H7 8OG E 6 1.54 REMARK 500 HH TYR A 126 N3 DA C 18 1.57 REMARK 500 OD2 ASP A 16 HH TYR A 213 1.58 REMARK 500 HH TYR D 89 OP1 DT E 7 1.60 REMARK 500 OP2 DG F 13 O HOH F 101 2.02 REMARK 500 OE1 GLN A 60 O HOH A 501 2.04 REMARK 500 O3' DT C 12 O HOH C 101 2.07 REMARK 500 O HOH E 207 O HOH E 213 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 1 N9 DA B 1 C4 -0.045 REMARK 500 DG B 8 O3' DG B 8 C3' -0.038 REMARK 500 DA C 18 N9 DA C 18 C4 0.038 REMARK 500 GLU D 171 CG GLU D 171 CD 0.095 REMARK 500 DA E 1 O3' DA E 1 C3' -0.050 REMARK 500 DA E 4 O3' DA E 4 C3' -0.041 REMARK 500 DC F 16 O3' DC F 16 C3' -0.078 REMARK 500 DG F 19 O3' DG F 19 C3' 0.096 REMARK 500 DC F 21 C5' DC F 21 C4' 0.057 REMARK 500 DT F 22 O3' DT F 22 C3' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 19 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DG E 3 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT E 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 8 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 16 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG F 19 O5' - P - OP2 ANGL. DEV. = -7.7 DEGREES REMARK 500 DT F 22 N3 - C4 - O4 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 88 69.94 28.65 REMARK 500 THR A 104 -73.25 -83.31 REMARK 500 ASP A 144 -167.92 -108.36 REMARK 500 VAL A 197 -63.80 -135.16 REMARK 500 ARG A 202 72.24 42.42 REMARK 500 THR A 297 -160.85 -106.46 REMARK 500 TYR D 88 62.63 29.17 REMARK 500 VAL D 197 -55.82 -131.08 REMARK 500 ALA D 359 42.47 -87.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 118 O REMARK 620 2 SER A 118 OG 79.3 REMARK 620 3 VAL A 123 O 88.1 95.3 REMARK 620 4 HOH C 105 O 70.3 143.7 65.1 REMARK 620 5 GLU D 181 OE2 160.1 107.9 72.9 95.5 REMARK 620 6 HOH D 513 O 129.8 133.0 118.2 82.8 58.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 SER D 118 O 20.4 REMARK 620 3 SER D 118 OG 21.8 2.1 REMARK 620 4 VAL D 123 O 19.7 1.2 2.3 REMARK 620 5 HOH D 512 O 22.4 2.0 1.2 2.8 REMARK 620 6 HOH F 102 O 19.3 1.6 3.7 2.1 3.6 REMARK 620 7 HOH F 110 O 22.1 2.1 2.9 3.3 1.9 2.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 SF4 A 401 S1 112.3 REMARK 620 3 SF4 A 401 S2 108.6 106.7 REMARK 620 4 SF4 A 401 S4 119.7 104.9 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 205 SG REMARK 620 2 SF4 A 401 S1 106.0 REMARK 620 3 SF4 A 401 S3 117.2 104.8 REMARK 620 4 SF4 A 401 S4 120.0 105.2 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 SF4 A 401 S2 114.6 REMARK 620 3 SF4 A 401 S3 119.4 103.1 REMARK 620 4 SF4 A 401 S4 109.4 102.9 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 214 SG REMARK 620 2 SF4 A 401 S1 111.8 REMARK 620 3 SF4 A 401 S2 121.8 107.1 REMARK 620 4 SF4 A 401 S3 108.3 102.7 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 THR A 259 O 132.9 REMARK 620 3 HOH A 525 O 90.7 74.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 198 SG REMARK 620 2 SF4 D 401 S1 111.2 REMARK 620 3 SF4 D 401 S2 119.6 104.6 REMARK 620 4 SF4 D 401 S4 112.1 103.5 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 205 SG REMARK 620 2 SF4 D 401 S1 109.2 REMARK 620 3 SF4 D 401 S3 112.4 105.5 REMARK 620 4 SF4 D 401 S4 121.1 104.4 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 208 SG REMARK 620 2 SF4 D 401 S2 117.7 REMARK 620 3 SF4 D 401 S3 113.8 102.5 REMARK 620 4 SF4 D 401 S4 112.5 105.3 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 214 SG REMARK 620 2 SF4 D 401 S1 112.2 REMARK 620 3 SF4 D 401 S2 113.0 103.6 REMARK 620 4 SF4 D 401 S3 116.8 106.3 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 257 OD2 REMARK 620 2 THR D 259 O 150.5 REMARK 620 N 1 DBREF 8DWF A 1 365 UNP P83847 MUTY_GEOSE 1 365 DBREF 8DWF B 1 11 PDB 8DWF 8DWF 1 11 DBREF 8DWF C 12 22 PDB 8DWF 8DWF 12 22 DBREF 8DWF D 1 365 UNP P83847 MUTY_GEOSE 1 365 DBREF 8DWF E 1 11 PDB 8DWF 8DWF 1 11 DBREF 8DWF F 12 22 PDB 8DWF 8DWF 12 22 SEQADV 8DWF SER A 43 UNP P83847 GLU 43 ENGINEERED MUTATION SEQADV 8DWF SER D 43 UNP P83847 GLU 43 ENGINEERED MUTATION SEQRES 1 A 365 MET THR ARG GLU THR GLU ARG PHE PRO ALA ARG GLU PHE SEQRES 2 A 365 GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG GLU ARG ARG SEQRES 3 A 365 ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO TYR LYS VAL SEQRES 4 A 365 TRP VAL SER SER VAL MET LEU GLN GLN THR ARG VAL GLU SEQRES 5 A 365 THR VAL ILE PRO TYR PHE GLU GLN PHE ILE ASP ARG PHE SEQRES 6 A 365 PRO THR LEU GLU ALA LEU ALA ASP ALA ASP GLU ASP GLU SEQRES 7 A 365 VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR TYR SER ARG SEQRES 8 A 365 VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU VAL LYS THR SEQRES 9 A 365 ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO ASP GLU PHE SEQRES 10 A 365 SER ARG LEU LYS GLY VAL GLY PRO TYR THR VAL GLY ALA SEQRES 11 A 365 VAL LEU SER LEU ALA TYR GLY VAL PRO GLU PRO ALA VAL SEQRES 12 A 365 ASP GLY ASN VAL MET ARG VAL LEU SER ARG LEU PHE LEU SEQRES 13 A 365 VAL THR ASP ASP ILE ALA LYS PRO SER THR ARG LYS ARG SEQRES 14 A 365 PHE GLU GLN ILE VAL ARG GLU ILE MET ALA TYR GLU ASN SEQRES 15 A 365 PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU LEU GLY ALA SEQRES 16 A 365 LEU VAL CYS THR PRO ARG ARG PRO SER CYS LEU LEU CYS SEQRES 17 A 365 PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA GLU GLY VAL SEQRES 18 A 365 ALA GLU GLU LEU PRO VAL LYS MET LYS LYS THR ALA VAL SEQRES 19 A 365 LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU ALA ASP ASP SEQRES 20 A 365 GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SER THR GLY SEQRES 21 A 365 LEU LEU ALA ASN LEU TRP GLU PHE PRO SER CYS GLU THR SEQRES 22 A 365 ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU GLN MET VAL SEQRES 23 A 365 GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU THR GLU PRO SEQRES 24 A 365 ILE VAL SER PHE GLU HIS ALA PHE SER HIS LEU VAL TRP SEQRES 25 A 365 GLN LEU THR VAL PHE PRO GLY ARG LEU VAL HIS GLY GLY SEQRES 26 A 365 PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO GLU ASP GLU SEQRES 27 A 365 LEU LYS ALA TYR ALA PHE PRO VAL SER HIS GLN ARG VAL SEQRES 28 A 365 TRP ARG GLU TYR LYS GLU TRP ALA SER GLY VAL ARG ARG SEQRES 29 A 365 PRO SEQRES 1 B 11 DA DA DG DA DC 8OG DT DG DG DA DC SEQRES 1 C 11 DT DG DT DC DC DA DA DG DT DC DT SEQRES 1 D 365 MET THR ARG GLU THR GLU ARG PHE PRO ALA ARG GLU PHE SEQRES 2 D 365 GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG GLU ARG ARG SEQRES 3 D 365 ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO TYR LYS VAL SEQRES 4 D 365 TRP VAL SER SER VAL MET LEU GLN GLN THR ARG VAL GLU SEQRES 5 D 365 THR VAL ILE PRO TYR PHE GLU GLN PHE ILE ASP ARG PHE SEQRES 6 D 365 PRO THR LEU GLU ALA LEU ALA ASP ALA ASP GLU ASP GLU SEQRES 7 D 365 VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR TYR SER ARG SEQRES 8 D 365 VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU VAL LYS THR SEQRES 9 D 365 ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO ASP GLU PHE SEQRES 10 D 365 SER ARG LEU LYS GLY VAL GLY PRO TYR THR VAL GLY ALA SEQRES 11 D 365 VAL LEU SER LEU ALA TYR GLY VAL PRO GLU PRO ALA VAL SEQRES 12 D 365 ASP GLY ASN VAL MET ARG VAL LEU SER ARG LEU PHE LEU SEQRES 13 D 365 VAL THR ASP ASP ILE ALA LYS PRO SER THR ARG LYS ARG SEQRES 14 D 365 PHE GLU GLN ILE VAL ARG GLU ILE MET ALA TYR GLU ASN SEQRES 15 D 365 PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU LEU GLY ALA SEQRES 16 D 365 LEU VAL CYS THR PRO ARG ARG PRO SER CYS LEU LEU CYS SEQRES 17 D 365 PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA GLU GLY VAL SEQRES 18 D 365 ALA GLU GLU LEU PRO VAL LYS MET LYS LYS THR ALA VAL SEQRES 19 D 365 LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU ALA ASP ASP SEQRES 20 D 365 GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SER THR GLY SEQRES 21 D 365 LEU LEU ALA ASN LEU TRP GLU PHE PRO SER CYS GLU THR SEQRES 22 D 365 ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU GLN MET VAL SEQRES 23 D 365 GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU THR GLU PRO SEQRES 24 D 365 ILE VAL SER PHE GLU HIS ALA PHE SER HIS LEU VAL TRP SEQRES 25 D 365 GLN LEU THR VAL PHE PRO GLY ARG LEU VAL HIS GLY GLY SEQRES 26 D 365 PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO GLU ASP GLU SEQRES 27 D 365 LEU LYS ALA TYR ALA PHE PRO VAL SER HIS GLN ARG VAL SEQRES 28 D 365 TRP ARG GLU TYR LYS GLU TRP ALA SER GLY VAL ARG ARG SEQRES 29 D 365 PRO SEQRES 1 E 11 DA DA DG DA DC 8OG DT DG DG DA DC SEQRES 1 F 11 DT DG DT DC DC DA DA DG DT DC DT HET 8OG B 6 34 HET 8OG E 6 34 HET SF4 A 401 8 HET CA A 402 1 HET CA A 403 1 HET EDO A 404 10 HET TRS B 101 20 HET SF4 D 401 8 HET CA D 402 1 HET CA D 403 1 HET EDO D 404 10 HET TRS E 101 20 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 8OG 2(C10 H14 N5 O8 P) FORMUL 7 SF4 2(FE4 S4) FORMUL 8 CA 4(CA 2+) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 11 TRS 2(C4 H12 N O3 1+) FORMUL 17 HOH *93(H2 O) HELIX 1 AA1 PRO A 9 ARG A 25 1 17 HELIX 2 AA2 LEU A 28 LYS A 32 5 5 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 ARG A 50 PHE A 65 1 16 HELIX 5 AA5 THR A 67 ALA A 74 1 8 HELIX 6 AA6 ASP A 75 TRP A 83 1 9 HELIX 7 AA7 TYR A 89 TYR A 106 1 18 HELIX 8 AA8 ASP A 113 SER A 118 1 6 HELIX 9 AA9 GLY A 124 GLY A 137 1 14 HELIX 10 AB1 ASP A 144 PHE A 155 1 12 HELIX 11 AB2 LYS A 163 MET A 178 1 16 HELIX 12 AB3 ASN A 182 VAL A 197 1 16 HELIX 13 AB4 SER A 204 CYS A 208 5 5 HELIX 14 AB5 VAL A 210 TYR A 213 5 4 HELIX 15 AB6 CYS A 214 GLY A 220 1 7 HELIX 16 AB7 VAL A 221 LEU A 225 5 5 HELIX 17 AB8 GLY A 278 GLY A 287 1 10 HELIX 18 AB9 GLU A 336 TYR A 342 5 7 HELIX 19 AC1 PRO A 345 TRP A 358 1 14 HELIX 20 AC2 PRO D 9 ARG D 25 1 17 HELIX 21 AC3 LEU D 28 LYS D 32 5 5 HELIX 22 AC4 ASP D 35 LEU D 46 1 12 HELIX 23 AC5 ARG D 50 PHE D 65 1 16 HELIX 24 AC6 THR D 67 ALA D 74 1 8 HELIX 25 AC7 ASP D 75 GLU D 84 1 10 HELIX 26 AC8 TYR D 89 GLY D 107 1 19 HELIX 27 AC9 ASP D 113 SER D 118 1 6 HELIX 28 AD1 GLY D 124 GLY D 137 1 14 HELIX 29 AD2 ASP D 144 PHE D 155 1 12 HELIX 30 AD3 LYS D 163 MET D 178 1 16 HELIX 31 AD4 ASN D 182 VAL D 197 1 16 HELIX 32 AD5 SER D 204 CYS D 208 5 5 HELIX 33 AD6 VAL D 210 TYR D 213 5 4 HELIX 34 AD7 CYS D 214 GLY D 220 1 7 HELIX 35 AD8 VAL D 221 LEU D 225 5 5 HELIX 36 AD9 GLY D 278 GLN D 289 1 12 HELIX 37 AE1 PRO D 335 TYR D 342 5 8 HELIX 38 AE2 PRO D 345 ALA D 359 1 15 SHEET 1 AA1 4 SER A 270 GLU A 272 0 SHEET 2 AA1 4 LYS A 235 ALA A 245 -1 N ALA A 240 O CYS A 271 SHEET 3 AA1 4 LEU A 310 HIS A 323 1 O PHE A 317 N VAL A 241 SHEET 4 AA1 4 LEU A 292 LEU A 296 -1 N GLN A 293 O VAL A 322 SHEET 1 AA2 4 SER A 270 GLU A 272 0 SHEET 2 AA2 4 LYS A 235 ALA A 245 -1 N ALA A 240 O CYS A 271 SHEET 3 AA2 4 LEU A 310 HIS A 323 1 O PHE A 317 N VAL A 241 SHEET 4 AA2 4 VAL A 301 ALA A 306 -1 N HIS A 305 O TRP A 312 SHEET 1 AA3 3 TRP A 266 GLU A 267 0 SHEET 2 AA3 3 VAL A 251 LYS A 255 -1 N ARG A 254 O GLU A 267 SHEET 3 AA3 3 TYR A 331 ALA A 334 -1 O ARG A 332 N ILE A 253 SHEET 1 AA4 4 SER D 270 GLU D 272 0 SHEET 2 AA4 4 LYS D 235 ALA D 245 -1 N ALA D 240 O CYS D 271 SHEET 3 AA4 4 LEU D 310 VAL D 322 1 O GLN D 313 N LEU D 239 SHEET 4 AA4 4 GLN D 293 LEU D 296 -1 N GLN D 293 O VAL D 322 SHEET 1 AA5 4 SER D 270 GLU D 272 0 SHEET 2 AA5 4 LYS D 235 ALA D 245 -1 N ALA D 240 O CYS D 271 SHEET 3 AA5 4 LEU D 310 VAL D 322 1 O GLN D 313 N LEU D 239 SHEET 4 AA5 4 VAL D 301 ALA D 306 -1 N PHE D 303 O LEU D 314 SHEET 1 AA6 3 TRP D 266 GLU D 267 0 SHEET 2 AA6 3 VAL D 251 LYS D 255 -1 N ARG D 254 O GLU D 267 SHEET 3 AA6 3 TYR D 331 ALA D 334 -1 O ALA D 334 N VAL D 251 LINK O3' DC B 5 P 8OG B 6 1555 1555 1.60 LINK O3' 8OG B 6 P DT B 7 1555 1555 1.60 LINK O3' DC E 5 P 8OG E 6 1555 1555 1.62 LINK O3' 8OG E 6 P DT E 7 1555 1555 1.59 LINK O SER A 118 CA CA A 402 1555 1555 2.25 LINK OG SER A 118 CA CA A 402 1555 1555 2.65 LINK O VAL A 123 CA CA A 402 1555 1555 2.39 LINK OE2 GLU A 181 CA CA D 402 1555 2555 2.09 LINK SG CYS A 198 FE3 SF4 A 401 1555 1555 2.27 LINK SG CYS A 205 FE2 SF4 A 401 1555 1555 2.24 LINK SG CYS A 208 FE1 SF4 A 401 1555 1555 2.42 LINK SG CYS A 214 FE4 SF4 A 401 1555 1555 2.25 LINK OD2 ASP A 257 CA CA A 403 1555 1555 2.48 LINK O THR A 259 CA CA A 403 1555 1555 2.65 LINK CA CA A 402 O HOH C 105 1555 1555 2.49 LINK CA CA A 402 OE2 GLU D 181 2645 1555 2.74 LINK CA CA A 402 O HOH D 513 1555 2655 2.68 LINK CA CA A 403 O HOH A 525 1555 1555 2.62 LINK O SER D 118 CA CA D 402 1555 1555 2.31 LINK OG SER D 118 CA CA D 402 1555 1555 2.77 LINK O VAL D 123 CA CA D 402 1555 1555 2.16 LINK SG CYS D 198 FE3 SF4 D 401 1555 1555 2.40 LINK SG CYS D 205 FE2 SF4 D 401 1555 1555 2.27 LINK SG CYS D 208 FE1 SF4 D 401 1555 1555 2.34 LINK SG CYS D 214 FE4 SF4 D 401 1555 1555 2.29 LINK OD2 ASP D 257 CA CA D 403 1555 1555 2.54 LINK O THR D 259 CA CA D 403 1555 1555 2.58 LINK CA CA D 402 O HOH D 512 1555 1555 2.68 LINK CA CA D 402 O HOH F 102 1555 1555 2.54 LINK CA CA D 402 O HOH F 110 1555 1555 3.18 CISPEP 1 LEU A 225 PRO A 226 0 -4.07 CISPEP 2 GLU A 329 PRO A 330 0 1.64 CISPEP 3 LEU D 225 PRO D 226 0 -1.09 CISPEP 4 GLU D 329 PRO D 330 0 8.12 CRYST1 49.080 137.900 74.520 90.00 101.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020375 0.000000 0.004123 0.00000 SCALE2 0.000000 0.007252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013691 0.00000