HEADER TRANSFERASE 02-AUG-22 8DX3 TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 3- TITLE 2 BROMOBENZYLAMINE IN THE THUMB SUBDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 8 SUBTYPE B (ISOLATE BH10); SOURCE 9 ORGANISM_COMMON: HIV-1; SOURCE 10 ORGANISM_TAXID: 11678; SOURCE 11 STRAIN: ISOLATE BH10; SOURCE 12 GENE: GAG-POL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DX3 1 REMARK REVDAT 1 31-MAY-23 8DX3 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 145965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9800 - 6.1600 0.98 5445 141 0.1639 0.1813 REMARK 3 2 6.1600 - 4.8900 0.98 5415 145 0.1713 0.1683 REMARK 3 3 4.8900 - 4.2800 0.98 5410 144 0.1534 0.1744 REMARK 3 4 4.2800 - 3.8900 0.97 5389 143 0.1595 0.2152 REMARK 3 5 3.8800 - 3.6100 0.98 5430 149 0.1738 0.1922 REMARK 3 6 3.6100 - 3.3900 0.98 5390 138 0.1837 0.2155 REMARK 3 7 3.3900 - 3.2200 0.97 5411 147 0.1926 0.2297 REMARK 3 8 3.2200 - 3.0800 0.97 5380 146 0.2087 0.2617 REMARK 3 9 3.0800 - 2.9700 0.96 5255 141 0.2149 0.2660 REMARK 3 10 2.9700 - 2.8600 0.96 5289 146 0.2117 0.2337 REMARK 3 11 2.8600 - 2.7700 0.96 5332 147 0.2119 0.2489 REMARK 3 12 2.7700 - 2.6900 0.96 5217 137 0.2238 0.2528 REMARK 3 13 2.6900 - 2.6200 0.95 5321 141 0.2245 0.3235 REMARK 3 14 2.6200 - 2.5600 0.96 5372 145 0.2191 0.2902 REMARK 3 15 2.5600 - 2.5000 0.95 5266 135 0.2311 0.2979 REMARK 3 16 2.5000 - 2.4500 0.95 5208 144 0.2355 0.2464 REMARK 3 17 2.4500 - 2.4000 0.95 5162 137 0.2345 0.2688 REMARK 3 18 2.4000 - 2.3500 0.94 5229 141 0.2392 0.3201 REMARK 3 19 2.3500 - 2.3100 0.93 5197 141 0.2371 0.2696 REMARK 3 20 2.3100 - 2.2700 0.94 5097 140 0.2420 0.2978 REMARK 3 21 2.2700 - 2.2400 0.94 5244 143 0.2494 0.2606 REMARK 3 22 2.2400 - 2.2000 0.94 5177 141 0.2585 0.3048 REMARK 3 23 2.2000 - 2.1700 0.93 5132 136 0.2695 0.2858 REMARK 3 24 2.1700 - 2.1400 0.93 5207 142 0.2667 0.3444 REMARK 3 25 2.1400 - 2.1100 0.93 5176 137 0.2766 0.2890 REMARK 3 26 2.1100 - 2.0800 0.92 4993 135 0.2932 0.3209 REMARK 3 27 2.0800 - 2.0600 0.90 5002 137 0.3003 0.3135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.253 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8305 REMARK 3 ANGLE : 0.981 11284 REMARK 3 CHIRALITY : 0.067 1220 REMARK 3 PLANARITY : 0.006 1422 REMARK 3 DIHEDRAL : 18.703 3143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1162 -15.3931 70.4008 REMARK 3 T TENSOR REMARK 3 T11: 0.6304 T22: 0.4763 REMARK 3 T33: 0.3351 T12: 0.0084 REMARK 3 T13: 0.1013 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 0.1992 L22: 0.3223 REMARK 3 L33: 0.4282 L12: 0.0873 REMARK 3 L13: 0.0911 L23: 0.3801 REMARK 3 S TENSOR REMARK 3 S11: 0.2016 S12: -0.2469 S13: -0.0339 REMARK 3 S21: 0.2376 S22: -0.1601 S23: 0.0546 REMARK 3 S31: 0.1931 S32: 0.0671 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2772 -17.5995 58.7764 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.3361 REMARK 3 T33: 0.2868 T12: -0.0201 REMARK 3 T13: 0.0183 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.0439 L22: 0.0903 REMARK 3 L33: 0.1085 L12: 0.0913 REMARK 3 L13: 0.0744 L23: 0.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.1912 S12: 0.0369 S13: -0.0728 REMARK 3 S21: 0.0737 S22: 0.1205 S23: 0.0025 REMARK 3 S31: 0.2183 S32: -0.2482 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8373 -18.5054 62.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.4079 T22: 0.3971 REMARK 3 T33: 0.2632 T12: 0.0293 REMARK 3 T13: 0.0286 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.3641 L22: 0.0965 REMARK 3 L33: 0.1376 L12: 0.1856 REMARK 3 L13: 0.1618 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: -0.2396 S13: -0.2183 REMARK 3 S21: 0.0869 S22: 0.0625 S23: 0.1057 REMARK 3 S31: 0.1339 S32: 0.1277 S33: 0.0952 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7293 -25.8492 40.0787 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.2934 REMARK 3 T33: 0.3270 T12: -0.0061 REMARK 3 T13: 0.0010 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.3542 L22: 0.4897 REMARK 3 L33: 0.4144 L12: 0.3288 REMARK 3 L13: 0.2609 L23: 0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.2448 S12: -0.1721 S13: -0.2605 REMARK 3 S21: 0.3166 S22: 0.0489 S23: -0.0056 REMARK 3 S31: 0.1505 S32: -0.0749 S33: 0.0966 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3502 -15.6698 17.4153 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2623 REMARK 3 T33: 0.3297 T12: 0.0052 REMARK 3 T13: -0.0032 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2405 L22: 0.6379 REMARK 3 L33: 0.5854 L12: -0.0527 REMARK 3 L13: 0.1397 L23: -0.2551 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.0314 S13: -0.1176 REMARK 3 S21: -0.0307 S22: 0.0799 S23: 0.1974 REMARK 3 S31: 0.0072 S32: -0.1392 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0066 6.8769 6.6257 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.4111 REMARK 3 T33: 0.3364 T12: 0.0152 REMARK 3 T13: 0.0215 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.4764 L22: 0.2717 REMARK 3 L33: 0.3689 L12: -0.1572 REMARK 3 L13: 0.3516 L23: 0.0366 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.1386 S13: -0.1230 REMARK 3 S21: 0.0293 S22: 0.0751 S23: 0.0351 REMARK 3 S31: 0.0904 S32: -0.0547 S33: 0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2241 17.5235 4.0811 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.4706 REMARK 3 T33: 0.3191 T12: 0.0580 REMARK 3 T13: 0.0633 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.0780 L22: 0.1019 REMARK 3 L33: 0.0786 L12: 0.0621 REMARK 3 L13: -0.0393 L23: -0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: -0.1776 S13: -0.0820 REMARK 3 S21: 0.0287 S22: 0.0228 S23: 0.0254 REMARK 3 S31: -0.0567 S32: -0.2757 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7234 1.6198 36.5554 REMARK 3 T TENSOR REMARK 3 T11: 0.3246 T22: 0.3351 REMARK 3 T33: 0.3081 T12: -0.0304 REMARK 3 T13: -0.0284 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.5047 L22: 0.3463 REMARK 3 L33: 0.2541 L12: -0.0048 REMARK 3 L13: 0.2509 L23: -0.1363 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.0267 S13: 0.0656 REMARK 3 S21: 0.1321 S22: -0.0306 S23: -0.0130 REMARK 3 S31: -0.0435 S32: 0.1832 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.6138 15.7276 30.7366 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.4124 REMARK 3 T33: 0.4773 T12: -0.2519 REMARK 3 T13: -0.0997 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 0.6160 L22: 0.6118 REMARK 3 L33: 0.4866 L12: -0.2962 REMARK 3 L13: 0.3214 L23: 0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.1822 S12: 0.1875 S13: 0.3079 REMARK 3 S21: 0.2091 S22: 0.0779 S23: -0.3583 REMARK 3 S31: -0.0896 S32: 0.4469 S33: -0.1016 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6834 25.3243 7.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.3389 T22: 0.3089 REMARK 3 T33: 0.2867 T12: -0.0230 REMARK 3 T13: 0.0082 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.2804 L22: 0.6008 REMARK 3 L33: 0.5402 L12: 0.2735 REMARK 3 L13: 0.2141 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: 0.0917 S13: 0.1588 REMARK 3 S21: 0.1387 S22: -0.0017 S23: 0.0355 REMARK 3 S31: -0.1549 S32: 0.0337 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0789 10.6961 20.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.2430 REMARK 3 T33: 0.3122 T12: -0.0189 REMARK 3 T13: -0.0012 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.2283 L22: 0.3716 REMARK 3 L33: 0.1422 L12: 0.0420 REMARK 3 L13: 0.0248 L23: 0.1067 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.0131 S13: 0.0573 REMARK 3 S21: 0.0899 S22: -0.1110 S23: 0.0377 REMARK 3 S31: -0.1027 S32: 0.0046 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.99200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.49700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.99200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.49700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 184 -126.37 59.70 REMARK 500 LYS A 219 96.56 -59.04 REMARK 500 ILE A 270 -23.73 -141.40 REMARK 500 HIS A 539 34.22 70.57 REMARK 500 ASP B 67 35.45 91.68 REMARK 500 GLN B 85 155.22 -39.51 REMARK 500 LYS B 101 8.14 -68.16 REMARK 500 MET B 184 -125.67 51.17 REMARK 500 VAL B 241 -167.62 -119.22 REMARK 500 ARG B 284 132.15 -33.78 REMARK 500 THR B 286 60.27 -118.97 REMARK 500 LYS B 347 71.17 -117.52 REMARK 500 ALA B 355 -10.80 -156.59 REMARK 500 MET B 357 104.30 -59.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 8DX3 A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DX3 B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DX3 MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DX3 VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DX3 ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DX3 ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DX3 SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DX3 SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET 4JH A 701 9 HET T27 A 702 28 HET DMS A 703 4 HET DMS A 704 4 HET DMS A 705 4 HET DMS A 706 4 HET DMS A 707 4 HET EDO A 708 4 HET MG A 709 1 HET SO4 A 710 5 HET SO4 A 711 5 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET DMS B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET SO4 B 507 5 HETNAM 4JH 1-(3-BROMOPHENYL)METHANAMINE HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 4JH C7 H8 BR N FORMUL 4 T27 C22 H18 N6 FORMUL 5 DMS 9(C2 H6 O S) FORMUL 10 EDO 3(C2 H6 O2) FORMUL 11 MG MG 2+ FORMUL 12 SO4 3(O4 S 2-) FORMUL 21 HOH *357(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 GLY A 112 VAL A 118 5 7 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 GLN A 174 1 20 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 282 1 7 HELIX 11 AB2 THR A 296 LEU A 310 1 15 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 SER A 489 1 17 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 GLY A 544 SER A 553 1 10 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 THR B 84 1 8 HELIX 20 AC2 GLY B 99 LYS B 103 5 5 HELIX 21 AC3 GLY B 112 VAL B 118 5 7 HELIX 22 AC4 PHE B 124 ALA B 129 5 6 HELIX 23 AC5 SER B 134 GLU B 138 5 5 HELIX 24 AC6 LYS B 154 ASN B 175 1 22 HELIX 25 AC7 GLU B 194 LEU B 214 1 21 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 VAL B 254 SER B 268 1 15 HELIX 28 AD1 VAL B 276 LEU B 282 1 7 HELIX 29 AD2 THR B 296 LEU B 310 1 15 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 THR B 403 TYR B 405 5 3 HELIX 33 AD6 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LEU A 349 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 LYS B 64 0 SHEET 2 AA9 2 TRP B 71 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 ASN B 348 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LEU B 349 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 CISPEP 1 PRO A 225 PRO A 226 0 0.74 CISPEP 2 PRO A 420 PRO A 421 0 -3.23 CRYST1 161.984 72.994 109.357 90.00 100.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006173 0.000000 0.001090 0.00000 SCALE2 0.000000 0.013700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009286 0.00000