HEADER TRANSFERASE 02-AUG-22 8DXE TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 2-AMINO-6- TITLE 2 FLUOROBENZONITRILE AT THE NNRTI ADJACENT SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DXE 1 REMARK REVDAT 1 31-MAY-23 8DXE 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 106428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0600 - 5.5400 0.98 7520 140 0.1735 0.1579 REMARK 3 2 5.5400 - 4.4000 0.98 7552 146 0.1630 0.1937 REMARK 3 3 4.4000 - 3.8400 0.98 7473 142 0.1540 0.2006 REMARK 3 4 3.8400 - 3.4900 0.98 7551 146 0.1693 0.1908 REMARK 3 5 3.4900 - 3.2400 0.98 7496 142 0.1847 0.1903 REMARK 3 6 3.2400 - 3.0500 0.98 7483 143 0.1902 0.2070 REMARK 3 7 3.0500 - 2.9000 0.97 7422 143 0.1954 0.2402 REMARK 3 8 2.9000 - 2.7700 0.97 7426 145 0.1945 0.2229 REMARK 3 9 2.7700 - 2.6600 0.97 7387 143 0.2002 0.2549 REMARK 3 10 2.6600 - 2.5700 0.97 7428 144 0.2049 0.2479 REMARK 3 11 2.5700 - 2.4900 0.96 7327 138 0.2087 0.2948 REMARK 3 12 2.4900 - 2.4200 0.96 7400 141 0.2048 0.2579 REMARK 3 13 2.4200 - 2.3600 0.95 7306 140 0.2054 0.2746 REMARK 3 14 2.3600 - 2.3000 0.94 7242 144 0.2044 0.2353 REMARK 3 15 2.3000 - 2.2500 0.95 7359 138 0.2043 0.2609 REMARK 3 16 2.2500 - 2.2000 0.95 7221 135 0.2086 0.2541 REMARK 3 17 2.2000 - 2.1600 0.96 7327 143 0.2038 0.2480 REMARK 3 18 2.1600 - 2.1100 0.95 7281 139 0.2115 0.2436 REMARK 3 19 2.1100 - 2.0800 0.94 7273 139 0.2176 0.2321 REMARK 3 20 2.0800 - 2.0400 0.94 7337 137 0.2238 0.2239 REMARK 3 21 2.0400 - 2.0100 0.95 7251 137 0.2244 0.2547 REMARK 3 22 2.0100 - 1.9800 0.94 7178 143 0.2289 0.2458 REMARK 3 23 1.9800 - 1.9500 0.93 7138 143 0.2388 0.3058 REMARK 3 24 1.9500 - 1.9200 0.93 7137 136 0.2463 0.2564 REMARK 3 25 1.9200 - 1.9000 0.93 7168 137 0.2652 0.2870 REMARK 3 26 1.9000 - 1.8700 0.94 7250 137 0.2748 0.2608 REMARK 3 27 1.8700 - 1.8500 0.76 5815 107 0.2961 0.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.203 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 8306 REMARK 3 ANGLE : 1.151 11289 REMARK 3 CHIRALITY : 0.079 1219 REMARK 3 PLANARITY : 0.008 1427 REMARK 3 DIHEDRAL : 17.435 3148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8876 -21.3972 52.8371 REMARK 3 T TENSOR REMARK 3 T11: 0.3664 T22: 0.2458 REMARK 3 T33: 0.2739 T12: 0.0161 REMARK 3 T13: -0.0034 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.1294 L22: 0.1087 REMARK 3 L33: 1.0798 L12: 0.3474 REMARK 3 L13: 0.0435 L23: 0.4246 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: -0.1278 S13: -0.1320 REMARK 3 S21: 0.1586 S22: 0.0415 S23: 0.0539 REMARK 3 S31: 0.1883 S32: -0.0524 S33: 0.0764 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1358 -3.6336 11.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.2406 REMARK 3 T33: 0.2559 T12: 0.0050 REMARK 3 T13: 0.0346 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.8983 L22: 0.1066 REMARK 3 L33: 0.6485 L12: -0.4399 REMARK 3 L13: 0.8065 L23: -0.3201 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0898 S13: -0.1277 REMARK 3 S21: 0.0384 S22: 0.0865 S23: 0.1040 REMARK 3 S31: 0.0756 S32: -0.1367 S33: 0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1731 1.4088 36.7921 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.2809 REMARK 3 T33: 0.2208 T12: -0.0272 REMARK 3 T13: -0.0067 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5757 L22: 0.6489 REMARK 3 L33: 0.4387 L12: -0.0081 REMARK 3 L13: 0.2900 L23: -0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0175 S13: -0.0183 REMARK 3 S21: 0.1793 S22: -0.0735 S23: 0.0030 REMARK 3 S31: -0.0768 S32: 0.1413 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2596 15.3667 31.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.2793 T22: 0.4135 REMARK 3 T33: 0.3996 T12: -0.3007 REMARK 3 T13: -0.0995 T23: 0.1428 REMARK 3 L TENSOR REMARK 3 L11: 1.1258 L22: 0.7306 REMARK 3 L33: 0.4045 L12: -0.6838 REMARK 3 L13: 0.8793 L23: -0.2705 REMARK 3 S TENSOR REMARK 3 S11: -0.3183 S12: 0.4836 S13: 0.4305 REMARK 3 S21: 0.3244 S22: 0.1248 S23: -0.4795 REMARK 3 S31: -0.0913 S32: 0.5641 S33: 0.0090 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8656 24.8094 7.7343 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.2210 REMARK 3 T33: 0.2262 T12: -0.0295 REMARK 3 T13: 0.0136 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.3573 L22: 0.9372 REMARK 3 L33: 0.9862 L12: 0.3423 REMARK 3 L13: 0.2833 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: 0.1084 S13: 0.2218 REMARK 3 S21: 0.1577 S22: 0.0173 S23: 0.0213 REMARK 3 S31: -0.2181 S32: 0.0923 S33: -0.0022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9547 10.4160 19.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.2143 REMARK 3 T33: 0.2305 T12: -0.0136 REMARK 3 T13: 0.0166 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3080 L22: 0.5163 REMARK 3 L33: 0.2843 L12: -0.0255 REMARK 3 L13: 0.1550 L23: -0.0938 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.1170 S13: 0.0510 REMARK 3 S21: 0.0606 S22: -0.1187 S23: 0.0244 REMARK 3 S31: -0.1183 S32: 0.0231 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.11300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.35850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.11300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.35850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1022 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 85 155.37 -47.60 REMARK 500 ASP A 121 117.61 -37.81 REMARK 500 MET A 184 -121.47 58.37 REMARK 500 ILE A 270 -22.62 -142.54 REMARK 500 LYS A 287 40.22 -146.29 REMARK 500 ASP B 67 44.49 78.40 REMARK 500 GLN B 85 153.22 -43.48 REMARK 500 VAL B 90 -74.36 -137.85 REMARK 500 ILE B 94 119.29 67.19 REMARK 500 MET B 184 -121.34 53.24 REMARK 500 LYS B 347 71.69 -115.20 REMARK 500 ALA B 355 -30.29 -155.75 REMARK 500 ALA B 360 36.04 -149.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 85.9 REMARK 620 3 HOH A 706 O 81.6 84.7 REMARK 620 4 HOH A 717 O 78.6 100.4 159.1 REMARK 620 5 HOH A 791 O 88.1 167.8 84.0 88.8 REMARK 620 N 1 2 3 4 DBREF 8DXE A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DXE B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DXE MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DXE VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DXE ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DXE ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DXE SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DXE SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET 0IF A 601 10 HET T27 A 602 28 HET DMS A 603 4 HET DMS A 604 4 HET DMS A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET MG A 608 1 HET SO4 A 609 5 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET DMS B 504 4 HET EDO B 505 4 HET SO4 B 506 5 HETNAM 0IF 2-AMINO-6-FLUOROBENZONITRILE HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 0IF C7 H5 F N2 FORMUL 4 T27 C22 H18 N6 FORMUL 5 DMS 7(C2 H6 O S) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 10 MG MG 2+ FORMUL 11 SO4 2(O4 S 2-) FORMUL 18 HOH *652(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 VAL A 111 PHE A 116 1 6 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LYS A 281 1 6 HELIX 11 AB2 LEU A 282 ARG A 284 5 3 HELIX 12 AB3 THR A 296 LEU A 310 1 15 HELIX 13 AB4 ASN A 363 GLY A 384 1 22 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 ALA A 508 1 10 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 GLY A 544 SER A 553 1 10 HELIX 19 AC1 THR B 27 GLU B 44 1 18 HELIX 20 AC2 PHE B 77 THR B 84 1 8 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 PHE B 124 ALA B 129 5 6 HELIX 24 AC6 SER B 134 GLU B 138 5 5 HELIX 25 AC7 LYS B 154 ASN B 175 1 22 HELIX 26 AC8 GLU B 194 LEU B 214 1 21 HELIX 27 AC9 HIS B 235 TRP B 239 5 5 HELIX 28 AD1 VAL B 254 SER B 268 1 15 HELIX 29 AD2 VAL B 276 LYS B 281 1 6 HELIX 30 AD3 LEU B 282 ARG B 284 5 3 HELIX 31 AD4 THR B 296 LEU B 310 1 15 HELIX 32 AD5 ASN B 363 GLY B 384 1 22 HELIX 33 AD6 GLN B 394 TRP B 406 1 13 HELIX 34 AD7 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 390 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 AA7 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 ASN B 348 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MG MG A 608 1555 1555 2.44 LINK OD1 ASP A 549 MG MG A 608 1555 1555 2.31 LINK MG MG A 608 O HOH A 706 1555 1555 2.24 LINK MG MG A 608 O HOH A 717 1555 1555 2.23 LINK MG MG A 608 O HOH A 791 1555 1555 2.22 CISPEP 1 PRO A 225 PRO A 226 0 2.00 CISPEP 2 PRO A 420 PRO A 421 0 3.93 CRYST1 162.226 72.717 109.555 90.00 100.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006164 0.000000 0.001143 0.00000 SCALE2 0.000000 0.013752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009284 0.00000