HEADER TRANSFERASE 02-AUG-22 8DXH TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 5- TITLE 2 FLUOROQUINAZOLIN-4-OL AT W266 SITE CAVEAT 8DXH JBQ A 601 HAS WRONG CHIRALITY AT ATOM C10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DXH 1 REMARK REVDAT 1 31-MAY-23 8DXH 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 115872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.720 REMARK 3 FREE R VALUE TEST SET COUNT : 3806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2500 - 5.3900 0.98 8208 145 0.1714 0.2049 REMARK 3 2 5.3900 - 4.2800 0.98 8107 147 0.1562 0.1944 REMARK 3 3 4.2800 - 3.7400 0.98 8153 141 0.1581 0.1592 REMARK 3 4 3.7400 - 3.4000 0.99 8163 143 0.1740 0.1982 REMARK 3 5 3.4000 - 3.1500 0.98 8126 143 0.1879 0.2060 REMARK 3 6 3.1500 - 2.9700 0.98 8160 146 0.1990 0.2164 REMARK 3 7 2.9700 - 2.8200 0.98 8112 140 0.1928 0.1832 REMARK 3 8 2.8200 - 2.7000 0.98 8079 146 0.1980 0.2056 REMARK 3 9 2.7000 - 2.5900 0.98 8153 143 0.2003 0.2590 REMARK 3 10 2.5900 - 2.5000 0.97 8074 140 0.1967 0.2395 REMARK 3 11 2.5000 - 2.4300 0.97 8011 145 0.2027 0.2213 REMARK 3 12 2.4300 - 2.3600 0.97 8072 141 0.2013 0.1930 REMARK 3 13 2.3600 - 2.2900 0.97 8031 143 0.1940 0.2295 REMARK 3 14 2.2900 - 2.2400 0.97 8018 139 0.2000 0.2350 REMARK 3 15 2.2400 - 2.1900 0.97 7994 138 0.2017 0.2409 REMARK 3 16 2.1900 - 2.1400 0.97 8058 145 0.2156 0.2412 REMARK 3 17 2.1400 - 2.1000 0.97 8127 141 0.2164 0.2981 REMARK 3 18 2.1000 - 2.0600 0.96 7868 135 0.2167 0.2333 REMARK 3 19 2.0600 - 2.0200 0.97 7965 139 0.2152 0.2504 REMARK 3 20 2.0200 - 1.9900 0.96 8138 144 0.2118 0.2132 REMARK 3 21 1.9900 - 1.9600 0.96 7880 139 0.2247 0.2438 REMARK 3 22 1.9600 - 1.9300 0.96 7959 145 0.2337 0.2542 REMARK 3 23 1.9300 - 1.9000 0.96 7954 135 0.2474 0.2540 REMARK 3 24 1.9000 - 1.8700 0.96 8068 134 0.2633 0.3254 REMARK 3 25 1.8700 - 1.8400 0.96 7977 139 0.2848 0.3493 REMARK 3 26 1.8400 - 1.8200 0.96 7978 141 0.3055 0.3038 REMARK 3 27 1.8200 - 1.8000 0.89 7409 129 0.3322 0.3984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 8311 REMARK 3 ANGLE : 1.333 11292 REMARK 3 CHIRALITY : 0.080 1224 REMARK 3 PLANARITY : 0.010 1432 REMARK 3 DIHEDRAL : 15.468 3152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4619 -21.6672 55.9784 REMARK 3 T TENSOR REMARK 3 T11: 0.3150 T22: 0.2525 REMARK 3 T33: 0.2499 T12: 0.0158 REMARK 3 T13: -0.0190 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.1472 L22: 0.1766 REMARK 3 L33: 1.1056 L12: 0.2665 REMARK 3 L13: 0.1073 L23: 0.2172 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.0995 S13: -0.1117 REMARK 3 S21: 0.1222 S22: 0.0681 S23: 0.0245 REMARK 3 S31: 0.1896 S32: 0.0043 S33: 0.0203 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5161 -5.8261 14.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.2168 REMARK 3 T33: 0.2445 T12: -0.0018 REMARK 3 T13: 0.0269 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.7466 L22: 0.2957 REMARK 3 L33: 0.5642 L12: -0.4651 REMARK 3 L13: 0.6295 L23: -0.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.0863 S13: -0.1403 REMARK 3 S21: 0.0424 S22: 0.0931 S23: 0.1250 REMARK 3 S31: 0.0528 S32: -0.1379 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1160 1.4296 36.6826 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.2627 REMARK 3 T33: 0.2149 T12: -0.0302 REMARK 3 T13: -0.0028 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.4593 L22: 0.6242 REMARK 3 L33: 0.4324 L12: -0.1039 REMARK 3 L13: 0.3405 L23: -0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0116 S13: 0.0029 REMARK 3 S21: 0.1247 S22: -0.0693 S23: -0.0074 REMARK 3 S31: -0.1097 S32: 0.1716 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6339 25.9866 33.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.5916 T22: 0.2644 REMARK 3 T33: 0.6507 T12: -0.1381 REMARK 3 T13: -0.1459 T23: 0.1379 REMARK 3 L TENSOR REMARK 3 L11: 0.0877 L22: 0.0311 REMARK 3 L33: 0.0144 L12: -0.0260 REMARK 3 L13: -0.0238 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: 0.1925 S13: 0.2656 REMARK 3 S21: 0.1506 S22: -0.0301 S23: 0.0912 REMARK 3 S31: -0.0764 S32: 0.0979 S33: -0.0487 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.4223 13.6826 30.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.2059 T22: 0.4471 REMARK 3 T33: 0.3554 T12: -0.2757 REMARK 3 T13: -0.0836 T23: 0.1276 REMARK 3 L TENSOR REMARK 3 L11: 0.9702 L22: 0.8439 REMARK 3 L33: 0.3961 L12: -0.5163 REMARK 3 L13: 0.6653 L23: -0.1887 REMARK 3 S TENSOR REMARK 3 S11: -0.2528 S12: 0.4682 S13: 0.3075 REMARK 3 S21: 0.2813 S22: 0.1051 S23: -0.4751 REMARK 3 S31: -0.0176 S32: 0.5275 S33: 0.0607 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7729 25.0366 2.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.2160 T22: 0.2996 REMARK 3 T33: 0.2401 T12: -0.0295 REMARK 3 T13: 0.0155 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0384 L22: 0.1679 REMARK 3 L33: 0.1152 L12: 0.0175 REMARK 3 L13: -0.0612 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: 0.0030 S13: 0.0536 REMARK 3 S21: 0.0774 S22: -0.0070 S23: -0.1533 REMARK 3 S31: 0.0390 S32: 0.2576 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3871 25.0254 9.3552 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.1927 REMARK 3 T33: 0.2357 T12: -0.0174 REMARK 3 T13: -0.0105 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.3078 L22: 0.7038 REMARK 3 L33: 0.8083 L12: 0.3480 REMARK 3 L13: 0.1572 L23: -0.0407 REMARK 3 S TENSOR REMARK 3 S11: -0.1142 S12: 0.0892 S13: 0.1864 REMARK 3 S21: 0.1254 S22: -0.0144 S23: 0.0374 REMARK 3 S31: -0.1818 S32: 0.1444 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1488 10.2566 20.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.1941 REMARK 3 T33: 0.2185 T12: -0.0182 REMARK 3 T13: 0.0063 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.3403 L22: 0.4437 REMARK 3 L33: 0.2864 L12: -0.0795 REMARK 3 L13: 0.0759 L23: -0.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.1047 S13: 0.0530 REMARK 3 S21: 0.0454 S22: -0.1028 S23: 0.0067 REMARK 3 S31: -0.0361 S32: 0.0091 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.99950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.99950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 85 157.87 -44.47 REMARK 500 ASP A 121 120.64 -37.11 REMARK 500 PRO A 176 1.47 -69.02 REMARK 500 MET A 184 -129.74 59.24 REMARK 500 LYS A 219 97.53 -60.69 REMARK 500 ILE A 270 -20.45 -143.86 REMARK 500 LYS A 287 45.50 -143.67 REMARK 500 GLU A 413 124.59 -38.88 REMARK 500 MET B 16 118.61 -162.09 REMARK 500 ASP B 67 31.85 79.64 REMARK 500 GLN B 85 153.70 -49.86 REMARK 500 ASN B 136 18.08 59.10 REMARK 500 MET B 184 -121.37 51.24 REMARK 500 LYS B 347 70.48 -117.71 REMARK 500 ALA B 355 -21.73 -150.28 REMARK 500 ARG B 356 39.23 -75.97 REMARK 500 ALA B 360 29.46 -141.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 84.7 REMARK 620 3 HOH A 704 O 105.8 93.3 REMARK 620 4 HOH A 812 O 148.8 71.5 95.7 REMARK 620 5 HOH A 859 O 80.5 79.2 169.8 75.5 REMARK 620 6 HOH A 992 O 107.5 152.5 106.3 87.3 78.7 REMARK 620 N 1 2 3 4 5 DBREF 8DXH A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DXH B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DXH MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DXH VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DXH ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DXH ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DXH SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DXH SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET JBQ A 601 12 HET T27 A 602 28 HET DMS A 603 4 HET DMS A 604 4 HET DMS A 605 4 HET DMS A 606 4 HET DMS A 607 4 HET EDO A 608 4 HET MG A 609 1 HET SO4 A 610 5 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET DMS B 504 4 HET DMS B 505 4 HET DMS B 506 4 HET DMS B 507 4 HET EDO B 508 4 HET SO4 B 509 5 HETNAM JBQ 5-FLUORANYL-3,4-DIHYDROQUINAZOLIN-4-OL HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 JBQ C8 H7 F N2 O FORMUL 4 T27 C22 H18 N6 FORMUL 5 DMS 12(C2 H6 O S) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 11 MG MG 2+ FORMUL 12 SO4 2(O4 S 2-) FORMUL 22 HOH *705(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 GLU A 89 GLY A 93 5 5 HELIX 4 AA4 HIS A 96 LEU A 100 5 5 HELIX 5 AA5 VAL A 111 PHE A 116 1 6 HELIX 6 AA6 PHE A 124 ALA A 129 5 6 HELIX 7 AA7 SER A 134 GLU A 138 5 5 HELIX 8 AA8 GLY A 155 GLN A 174 1 20 HELIX 9 AA9 GLU A 194 ARG A 211 1 18 HELIX 10 AB1 VAL A 254 SER A 268 1 15 HELIX 11 AB2 VAL A 276 LEU A 282 1 7 HELIX 12 AB3 THR A 296 LEU A 310 1 15 HELIX 13 AB4 ASN A 363 GLY A 384 1 22 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 ALA A 508 1 10 HELIX 17 AB8 SER A 515 LYS A 527 1 13 HELIX 18 AB9 GLY A 544 ALA A 554 1 11 HELIX 19 AC1 THR B 27 GLU B 44 1 18 HELIX 20 AC2 PHE B 77 THR B 84 1 8 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 PHE B 124 ALA B 129 5 6 HELIX 24 AC6 SER B 134 GLU B 138 5 5 HELIX 25 AC7 LYS B 154 ASN B 175 1 22 HELIX 26 AC8 GLU B 194 LEU B 214 1 21 HELIX 27 AC9 HIS B 235 TRP B 239 5 5 HELIX 28 AD1 VAL B 254 SER B 268 1 15 HELIX 29 AD2 VAL B 276 LYS B 281 1 6 HELIX 30 AD3 LEU B 282 ARG B 284 5 3 HELIX 31 AD4 THR B 296 LEU B 310 1 15 HELIX 32 AD5 ASN B 363 GLY B 384 1 22 HELIX 33 AD6 GLN B 394 TRP B 402 1 9 HELIX 34 AD7 THR B 403 TYR B 405 5 3 HELIX 35 AD8 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 2 TRP A 252 THR A 253 0 SHEET 2 AA5 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 AA6 5 LYS A 347 ALA A 355 0 SHEET 2 AA6 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA6 5 ILE A 326 GLY A 333 -1 N GLN A 332 O GLN A 336 SHEET 4 AA6 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA6 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA7 2 HIS A 361 THR A 362 0 SHEET 2 AA7 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA8 5 GLN A 464 LEU A 469 0 SHEET 2 AA8 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA8 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA8 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA8 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AB1 2 VAL B 60 ILE B 63 0 SHEET 2 AB1 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB2 4 VAL B 179 TYR B 183 0 SHEET 2 AB2 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB2 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB2 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB3 2 TRP B 252 THR B 253 0 SHEET 2 AB3 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB4 5 ASN B 348 TYR B 354 0 SHEET 2 AB4 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB4 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB4 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB4 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MG MG A 609 1555 1555 2.26 LINK OD1 ASP A 549 MG MG A 609 1555 1555 2.42 LINK MG MG A 609 O HOH A 704 1555 1555 2.27 LINK MG MG A 609 O HOH A 812 1555 1555 2.25 LINK MG MG A 609 O HOH A 859 1555 1555 2.39 LINK MG MG A 609 O HOH A 992 1555 1555 2.31 CISPEP 1 PRO A 225 PRO A 226 0 -2.99 CISPEP 2 PRO A 420 PRO A 421 0 2.85 CRYST1 161.999 72.760 109.393 90.00 100.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006173 0.000000 0.001154 0.00000 SCALE2 0.000000 0.013744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009300 0.00000