HEADER TRANSFERASE 02-AUG-22 8DXI TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT [1-(4- TITLE 2 FLUOROPHENYL)-5-METHYL-1H-PYRAZOL-4-YL]METHANOL AT MULTIPLE SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DXI 1 REMARK REVDAT 1 31-MAY-23 8DXI 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 91929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.180 REMARK 3 FREE R VALUE TEST SET COUNT : 3802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3200 - 5.8400 0.98 6468 145 0.1711 0.1858 REMARK 3 2 5.8300 - 4.6300 0.98 6414 140 0.1689 0.1647 REMARK 3 3 4.6300 - 4.0500 0.98 6370 143 0.1531 0.1814 REMARK 3 4 4.0500 - 3.6800 0.99 6500 142 0.1610 0.2201 REMARK 3 5 3.6800 - 3.4100 0.99 6533 144 0.1764 0.2026 REMARK 3 6 3.4100 - 3.2100 0.97 6342 142 0.1850 0.2109 REMARK 3 7 3.2100 - 3.0500 0.98 6412 143 0.1928 0.1930 REMARK 3 8 3.0500 - 2.9200 0.97 6381 143 0.1934 0.2323 REMARK 3 9 2.9200 - 2.8100 0.98 6433 145 0.1888 0.2189 REMARK 3 10 2.8100 - 2.7100 0.98 6419 143 0.1952 0.2343 REMARK 3 11 2.7100 - 2.6300 0.98 6427 144 0.2009 0.2167 REMARK 3 12 2.6300 - 2.5500 0.97 6376 143 0.2003 0.2430 REMARK 3 13 2.5500 - 2.4800 0.95 6244 137 0.2027 0.2236 REMARK 3 14 2.4800 - 2.4200 0.97 6341 140 0.2087 0.2528 REMARK 3 15 2.4200 - 2.3700 0.96 6378 144 0.2073 0.2776 REMARK 3 16 2.3700 - 2.3200 0.96 6236 142 0.2038 0.2418 REMARK 3 17 2.3200 - 2.2700 0.97 6257 139 0.2154 0.2388 REMARK 3 18 2.2700 - 2.2300 0.96 6322 141 0.2197 0.2277 REMARK 3 19 2.2300 - 2.1900 0.97 6429 141 0.2212 0.2589 REMARK 3 20 2.1900 - 2.1500 0.97 6315 140 0.2251 0.2764 REMARK 3 21 2.1500 - 2.1200 0.97 6235 138 0.2429 0.2518 REMARK 3 22 2.1200 - 2.0800 0.94 6226 134 0.2510 0.2573 REMARK 3 23 2.0800 - 2.0500 0.95 6218 140 0.2547 0.2801 REMARK 3 24 2.0500 - 2.0200 0.95 6176 136 0.2546 0.3122 REMARK 3 25 2.0200 - 2.0000 0.95 6358 144 0.2641 0.3056 REMARK 3 26 2.0000 - 1.9700 0.94 6129 139 0.2705 0.2946 REMARK 3 27 1.9700 - 1.9500 0.87 5725 130 0.2912 0.3389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.213 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.467 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 8347 REMARK 3 ANGLE : 1.229 11350 REMARK 3 CHIRALITY : 0.067 1222 REMARK 3 PLANARITY : 0.008 1456 REMARK 3 DIHEDRAL : 15.862 3181 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5789 -21.3750 52.7788 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2104 REMARK 3 T33: 0.2497 T12: -0.0016 REMARK 3 T13: 0.0060 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 0.1949 L22: 0.1555 REMARK 3 L33: 0.9786 L12: 0.1794 REMARK 3 L13: 0.3134 L23: 0.3204 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: -0.1187 S13: -0.1260 REMARK 3 S21: 0.1491 S22: 0.0551 S23: 0.0392 REMARK 3 S31: 0.1855 S32: -0.0810 S33: 0.1283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1449 -3.6338 11.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.2102 REMARK 3 T33: 0.2182 T12: 0.0063 REMARK 3 T13: 0.0225 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5597 L22: 0.1228 REMARK 3 L33: 0.5145 L12: -0.2806 REMARK 3 L13: 0.5881 L23: -0.2599 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.0653 S13: -0.1063 REMARK 3 S21: 0.0199 S22: 0.0798 S23: 0.1031 REMARK 3 S31: 0.0601 S32: -0.1334 S33: 0.0037 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1916 1.4748 36.7763 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.2596 REMARK 3 T33: 0.2041 T12: -0.0318 REMARK 3 T13: -0.0103 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.2866 L22: 0.2978 REMARK 3 L33: 0.1933 L12: -0.0704 REMARK 3 L13: 0.1660 L23: -0.0821 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0220 S13: -0.0237 REMARK 3 S21: 0.2008 S22: -0.0711 S23: -0.0333 REMARK 3 S31: -0.0714 S32: 0.1393 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.3042 15.4387 31.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.3452 REMARK 3 T33: 0.3928 T12: -0.2159 REMARK 3 T13: -0.0901 T23: 0.1308 REMARK 3 L TENSOR REMARK 3 L11: 0.6231 L22: 0.7298 REMARK 3 L33: 0.3167 L12: -0.2873 REMARK 3 L13: 0.3051 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: -0.1354 S12: 0.2825 S13: 0.3474 REMARK 3 S21: 0.1357 S22: 0.0437 S23: -0.3158 REMARK 3 S31: -0.1324 S32: 0.3904 S33: 0.0388 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1358 23.4372 9.3431 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.1892 REMARK 3 T33: 0.1847 T12: -0.0238 REMARK 3 T13: -0.0037 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.3828 L22: 0.5741 REMARK 3 L33: 0.5113 L12: 0.2897 REMARK 3 L13: 0.2196 L23: -0.2269 REMARK 3 S TENSOR REMARK 3 S11: -0.1527 S12: 0.1384 S13: 0.1922 REMARK 3 S21: 0.1271 S22: -0.0383 S23: -0.0492 REMARK 3 S31: -0.1709 S32: 0.1075 S33: -0.0063 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 384 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5698 9.0710 20.5471 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.1767 REMARK 3 T33: 0.2129 T12: -0.0039 REMARK 3 T13: -0.0089 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1005 L22: 0.1437 REMARK 3 L33: 0.1240 L12: 0.0343 REMARK 3 L13: 0.0106 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0403 S13: 0.0462 REMARK 3 S21: 0.1130 S22: -0.0572 S23: 0.0654 REMARK 3 S31: -0.0827 S32: -0.0664 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.21650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.41550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.21650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.41550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 122.78 -37.55 REMARK 500 MET A 184 -129.75 59.19 REMARK 500 LYS A 219 107.03 -55.22 REMARK 500 ILE A 270 -21.53 -142.64 REMARK 500 LYS A 287 44.18 -145.16 REMARK 500 ARG A 356 136.74 -39.07 REMARK 500 ASP B 67 39.83 80.58 REMARK 500 GLN B 85 155.27 -44.99 REMARK 500 ASP B 121 123.29 -38.60 REMARK 500 ASN B 136 15.37 59.91 REMARK 500 MET B 184 -122.47 53.15 REMARK 500 LYS B 347 70.34 -115.87 REMARK 500 ALA B 355 -16.58 -142.32 REMARK 500 ARG B 356 39.81 -85.26 REMARK 500 ALA B 360 34.51 -144.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 86.0 REMARK 620 3 HOH A 746 O 89.3 75.2 REMARK 620 4 HOH A 770 O 95.3 168.2 116.5 REMARK 620 5 HOH A 866 O 76.5 83.7 155.3 85.3 REMARK 620 N 1 2 3 4 DBREF 8DXI A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DXI B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DXI MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DXI VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DXI ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DXI ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DXI SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DXI SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET T27 A 601 28 HET DMS A 602 4 HET DMS A 603 4 HET DMS A 604 4 HET DMS A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET MG A 608 1 HET FMQ A 609 15 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET EDO B 504 4 HET FMQ B 505 15 HET SO4 B 506 5 HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM FMQ [1-(4-FLUOROPHENYL)-5-METHYL-1H-PYRAZOL-4-YL]METHANOL HETNAM SO4 SULFATE ION HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 T27 C22 H18 N6 FORMUL 4 DMS 7(C2 H6 O S) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 10 MG MG 2+ FORMUL 11 FMQ 2(C11 H11 F N2 O) FORMUL 17 SO4 O4 S 2- FORMUL 18 HOH *522(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 GLU A 89 GLY A 93 5 5 HELIX 4 AA4 HIS A 96 LEU A 100 5 5 HELIX 5 AA5 VAL A 111 SER A 117 1 7 HELIX 6 AA6 ASP A 121 ALA A 129 5 9 HELIX 7 AA7 SER A 134 GLU A 138 5 5 HELIX 8 AA8 GLY A 155 GLN A 174 1 20 HELIX 9 AA9 GLU A 194 LEU A 210 1 17 HELIX 10 AB1 ARG A 211 GLY A 213 5 3 HELIX 11 AB2 VAL A 254 SER A 268 1 15 HELIX 12 AB3 VAL A 276 LYS A 281 1 6 HELIX 13 AB4 LEU A 282 ARG A 284 5 3 HELIX 14 AB5 THR A 296 LEU A 310 1 15 HELIX 15 AB6 ASN A 363 GLY A 384 1 22 HELIX 16 AB7 GLN A 394 TYR A 405 1 12 HELIX 17 AB8 THR A 473 SER A 489 1 17 HELIX 18 AB9 SER A 499 ALA A 508 1 10 HELIX 19 AC1 SER A 515 LYS A 528 1 14 HELIX 20 AC2 GLY A 544 ALA A 554 1 11 HELIX 21 AC3 THR B 27 GLU B 44 1 18 HELIX 22 AC4 PHE B 77 THR B 84 1 8 HELIX 23 AC5 GLY B 99 LYS B 103 5 5 HELIX 24 AC6 GLY B 112 VAL B 118 5 7 HELIX 25 AC7 PHE B 124 ALA B 129 5 6 HELIX 26 AC8 SER B 134 GLU B 138 5 5 HELIX 27 AC9 LYS B 154 ASN B 175 1 22 HELIX 28 AD1 GLU B 194 LEU B 214 1 21 HELIX 29 AD2 HIS B 235 TRP B 239 5 5 HELIX 30 AD3 VAL B 254 SER B 268 1 15 HELIX 31 AD4 VAL B 276 LYS B 281 1 6 HELIX 32 AD5 LEU B 282 ARG B 284 5 3 HELIX 33 AD6 THR B 296 LEU B 310 1 15 HELIX 34 AD7 ASN B 363 GLY B 384 1 22 HELIX 35 AD8 GLN B 394 TRP B 402 1 9 HELIX 36 AD9 THR B 403 TYR B 405 5 3 HELIX 37 AE1 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 2 TRP A 252 THR A 253 0 SHEET 2 AA5 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 AA6 5 LYS A 347 ALA A 355 0 SHEET 2 AA6 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA6 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA6 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA6 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA7 2 HIS A 361 THR A 362 0 SHEET 2 AA7 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA8 5 GLN A 464 LEU A 469 0 SHEET 2 AA8 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA8 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA8 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA8 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N PHE B 130 O TYR B 144 SHEET 1 AB1 2 VAL B 60 ILE B 63 0 SHEET 2 AB1 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB2 4 VAL B 179 TYR B 183 0 SHEET 2 AB2 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB2 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB2 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB3 2 TRP B 252 THR B 253 0 SHEET 2 AB3 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB4 5 ASN B 348 TYR B 354 0 SHEET 2 AB4 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB4 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB4 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB4 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MG MG A 608 1555 1555 2.28 LINK OD1 ASP A 549 MG MG A 608 1555 1555 2.32 LINK MG MG A 608 O HOH A 746 1555 1555 2.25 LINK MG MG A 608 O HOH A 770 1555 1555 2.34 LINK MG MG A 608 O HOH A 866 1555 1555 2.31 CISPEP 1 PRO A 225 PRO A 226 0 -2.06 CISPEP 2 PRO A 420 PRO A 421 0 -0.67 CRYST1 162.433 72.831 109.626 90.00 100.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006156 0.000000 0.001156 0.00000 SCALE2 0.000000 0.013730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009281 0.00000