HEADER TRANSFERASE 02-AUG-22 8DXL TITLE HIV-1 REVERSE TRANSCRIPTASE/RILPIVIRINE WITH BOUND FRAGMENT 4- TITLE 2 IODOPYRAZOLE AT MULTIPLE SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOPRA,F.X.RUIZ,J.D.BAUMAN,E.ARNOLD REVDAT 2 25-OCT-23 8DXL 1 REMARK REVDAT 1 31-MAY-23 8DXL 0 JRNL AUTH A.CHOPRA,J.D.BAUMAN,F.X.RUIZ,E.ARNOLD JRNL TITL HALO LIBRARY, A TOOL FOR RAPID IDENTIFICATION OF LIGAND JRNL TITL 2 BINDING SITES ON PROTEINS USING CRYSTALLOGRAPHIC FRAGMENT JRNL TITL 3 SCREENING. JRNL REF J.MED.CHEM. V. 66 6013 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37115705 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01681 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 57431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.470 REMARK 3 FREE R VALUE TEST SET COUNT : 3558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2000 - 6.5700 0.99 4526 167 0.1686 0.1876 REMARK 3 2 6.5700 - 5.2200 0.99 4460 161 0.1888 0.2090 REMARK 3 3 5.2200 - 4.5600 0.98 4483 163 0.1585 0.1726 REMARK 3 4 4.5600 - 4.1400 0.98 4495 161 0.1448 0.1623 REMARK 3 5 4.1400 - 3.8400 0.98 4388 158 0.1474 0.1787 REMARK 3 6 3.8400 - 3.6200 0.97 4468 161 0.1601 0.1928 REMARK 3 7 3.6200 - 3.4400 0.97 4431 159 0.1634 0.1874 REMARK 3 8 3.4400 - 3.2900 0.96 4338 152 0.1642 0.2254 REMARK 3 9 3.2900 - 3.1600 0.95 4320 157 0.1810 0.1902 REMARK 3 10 3.1600 - 3.0500 0.91 4145 154 0.1847 0.1998 REMARK 3 11 3.0500 - 2.9600 0.91 4138 151 0.1925 0.2243 REMARK 3 12 2.9600 - 2.8700 0.90 4066 149 0.1904 0.2113 REMARK 3 13 2.8700 - 2.8000 0.88 4008 136 0.1892 0.2399 REMARK 3 14 2.8000 - 2.7300 0.84 3872 142 0.1970 0.1902 REMARK 3 15 2.7300 - 2.6700 0.85 3853 138 0.2044 0.2377 REMARK 3 16 2.6700 - 2.6100 0.83 3743 141 0.2143 0.2552 REMARK 3 17 2.6100 - 2.5600 0.84 3871 142 0.2255 0.2781 REMARK 3 18 2.5600 - 2.5100 0.83 3723 138 0.2239 0.2651 REMARK 3 19 2.5100 - 2.4600 0.81 3686 125 0.2374 0.2924 REMARK 3 20 2.4600 - 2.4200 0.80 3655 132 0.2449 0.2829 REMARK 3 21 2.4200 - 2.3800 0.76 3424 123 0.2512 0.2969 REMARK 3 22 2.3800 - 2.3500 0.73 3320 118 0.2581 0.2651 REMARK 3 23 2.3500 - 2.3100 0.75 3446 119 0.2593 0.2771 REMARK 3 24 2.3100 - 2.2800 0.74 3346 113 0.2628 0.2899 REMARK 3 25 2.2800 - 2.2500 0.61 2833 98 0.2753 0.2786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 8295 REMARK 3 ANGLE : 1.472 11268 REMARK 3 CHIRALITY : 0.089 1210 REMARK 3 PLANARITY : 0.009 1431 REMARK 3 DIHEDRAL : 19.910 3143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7806 -21.6173 52.7271 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.1562 REMARK 3 T33: 0.2028 T12: 0.0021 REMARK 3 T13: 0.0074 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.3653 L22: 0.1637 REMARK 3 L33: 0.8721 L12: 0.1130 REMARK 3 L13: 0.1719 L23: 0.3018 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.0999 S13: -0.1035 REMARK 3 S21: 0.1797 S22: 0.0443 S23: 0.0472 REMARK 3 S31: 0.1678 S32: -0.0511 S33: 0.1306 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1228 -3.5915 11.8161 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1787 REMARK 3 T33: 0.1899 T12: 0.0049 REMARK 3 T13: 0.0165 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4202 L22: 0.3133 REMARK 3 L33: 0.3231 L12: -0.3357 REMARK 3 L13: 0.3323 L23: -0.1551 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.0556 S13: -0.0583 REMARK 3 S21: -0.0054 S22: 0.0531 S23: 0.0929 REMARK 3 S31: 0.0462 S32: -0.0894 S33: 0.0122 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4480 -0.0505 40.2306 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.2551 REMARK 3 T33: 0.2178 T12: -0.0212 REMARK 3 T13: -0.0068 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.2267 L22: 0.3541 REMARK 3 L33: 0.2621 L12: -0.0864 REMARK 3 L13: 0.1559 L23: -0.2922 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.0037 S13: -0.0624 REMARK 3 S21: 0.2082 S22: -0.0504 S23: -0.0257 REMARK 3 S31: -0.0354 S32: 0.0695 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6562 13.8631 31.2903 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.3045 REMARK 3 T33: 0.2854 T12: -0.0864 REMARK 3 T13: -0.0603 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.0953 L22: 0.2011 REMARK 3 L33: 0.1317 L12: -0.1271 REMARK 3 L13: -0.0191 L23: 0.0842 REMARK 3 S TENSOR REMARK 3 S11: -0.1980 S12: 0.1913 S13: 0.1834 REMARK 3 S21: 0.0402 S22: -0.0390 S23: 0.1093 REMARK 3 S31: -0.1620 S32: 0.1811 S33: -0.0432 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.4854 13.6864 30.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.3597 REMARK 3 T33: 0.3366 T12: -0.1834 REMARK 3 T13: -0.0827 T23: 0.1379 REMARK 3 L TENSOR REMARK 3 L11: 0.5561 L22: 0.6917 REMARK 3 L33: 0.3696 L12: -0.3948 REMARK 3 L13: 0.4095 L23: -0.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.1274 S12: 0.3356 S13: 0.2291 REMARK 3 S21: 0.2496 S22: 0.0214 S23: -0.2862 REMARK 3 S31: 0.0158 S32: 0.3827 S33: 0.0387 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8407 25.2031 2.8169 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2567 REMARK 3 T33: 0.1931 T12: -0.0378 REMARK 3 T13: 0.0171 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.0290 L22: 0.0182 REMARK 3 L33: 0.0460 L12: 0.0240 REMARK 3 L13: 0.0029 L23: -0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.0368 S13: -0.0056 REMARK 3 S21: 0.1046 S22: -0.0208 S23: 0.0118 REMARK 3 S31: -0.0199 S32: 0.1117 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4510 25.0807 9.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.2082 REMARK 3 T33: 0.2213 T12: -0.0103 REMARK 3 T13: -0.0209 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.2120 L22: 0.4743 REMARK 3 L33: 0.4128 L12: 0.3040 REMARK 3 L13: 0.0278 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: 0.0913 S13: 0.1095 REMARK 3 S21: 0.1479 S22: -0.0053 S23: 0.0288 REMARK 3 S31: -0.1423 S32: 0.1252 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1717 10.2830 20.2149 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1690 REMARK 3 T33: 0.2029 T12: -0.0238 REMARK 3 T13: -0.0023 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.1233 L22: 0.2123 REMARK 3 L33: 0.1688 L12: 0.0150 REMARK 3 L13: 0.0658 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0843 S13: 0.0349 REMARK 3 S21: 0.0949 S22: -0.0852 S23: 0.0255 REMARK 3 S31: -0.0453 S32: 0.0164 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4G1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG 8000, 4% PEG 400, 100 MM REMARK 280 IMIDAZOLE PH 6.4-6.6, 15 MM MGSO4, 100 MM AMM SULFATE, 5 MM TCEP, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.15900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.65700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.15900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.65700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 63 -65.80 -106.34 REMARK 500 LYS A 64 -171.94 86.13 REMARK 500 LYS A 65 80.42 61.02 REMARK 500 LYS A 66 -37.12 -153.14 REMARK 500 ASP A 67 -103.00 -137.43 REMARK 500 SER A 68 36.46 -89.68 REMARK 500 THR A 69 13.98 59.31 REMARK 500 MET A 184 -127.14 59.26 REMARK 500 ILE A 270 -27.59 -143.00 REMARK 500 LYS A 287 15.50 -155.89 REMARK 500 ASP B 67 34.71 71.19 REMARK 500 TRP B 88 43.97 -96.36 REMARK 500 MET B 184 -122.42 48.01 REMARK 500 ALA B 355 -15.45 -150.13 REMARK 500 ALA B 360 28.21 -144.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 75.5 REMARK 620 3 HOH A 708 O 75.2 81.7 REMARK 620 4 HOH A 727 O 77.3 148.0 75.2 REMARK 620 5 HOH A 758 O 66.7 104.9 137.7 79.1 REMARK 620 6 HOH A 979 O 161.4 95.4 87.6 105.4 131.8 REMARK 620 N 1 2 3 4 5 DBREF 8DXL A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8DXL B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8DXL MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8DXL VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8DXL ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8DXL ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8DXL SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8DXL SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET T27 A 601 28 HET DMS A 602 4 HET DMS A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET MG A 607 1 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET PYZ A 611 6 HET PYZ A 612 6 HET DMS B 501 4 HET DMS B 502 4 HET DMS B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET SO4 B 506 5 HET PYZ B 507 6 HETNAM T27 4-{[4-({4-[(E)-2-CYANOETHENYL]-2,6- HETNAM 2 T27 DIMETHYLPHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}BENZONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM PYZ 4-IODOPYRAZOLE HETSYN T27 RILPIVIRINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 T27 C22 H18 N6 FORMUL 4 DMS 5(C2 H6 O S) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 9 MG MG 2+ FORMUL 10 SO4 4(O4 S 2-) FORMUL 13 PYZ 3(C3 H3 I N2) FORMUL 22 HOH *756(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 VAL A 111 PHE A 116 1 6 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 282 1 7 HELIX 11 AB2 THR A 296 LEU A 310 1 15 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 SER A 489 1 17 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 527 1 13 HELIX 17 AB8 GLY A 544 ALA A 554 1 11 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 THR B 84 1 8 HELIX 20 AC2 GLY B 99 LYS B 103 5 5 HELIX 21 AC3 GLY B 112 VAL B 118 5 7 HELIX 22 AC4 PHE B 124 ALA B 129 5 6 HELIX 23 AC5 SER B 134 GLU B 138 5 5 HELIX 24 AC6 LYS B 154 ASN B 175 1 22 HELIX 25 AC7 GLU B 194 LEU B 214 1 21 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 VAL B 254 SER B 268 1 15 HELIX 28 AD1 VAL B 276 LYS B 281 1 6 HELIX 29 AD2 THR B 296 LEU B 310 1 15 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 406 1 13 HELIX 32 AD5 VAL B 423 GLN B 428 1 6 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 ALA A 62 0 SHEET 2 AA2 2 LYS A 73 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N TRP A 337 O TYR A 354 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 LYS B 347 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MG MG A 607 1555 1555 2.66 LINK OD1 ASP A 549 MG MG A 607 1555 1555 2.47 LINK MG MG A 607 O HOH A 708 1555 1555 2.40 LINK MG MG A 607 O HOH A 727 1555 1555 2.32 LINK MG MG A 607 O HOH A 758 1555 1555 2.22 LINK MG MG A 607 O HOH A 979 1555 1555 2.23 CISPEP 1 PRO A 225 PRO A 226 0 -0.22 CISPEP 2 PRO A 420 PRO A 421 0 1.11 CRYST1 162.318 73.314 109.398 90.00 100.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006161 0.000000 0.001155 0.00000 SCALE2 0.000000 0.013640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009300 0.00000