HEADER HYDROLASE 03-AUG-22 8DY8 TITLE CRYSTAL STRUCTURE OF THE R178Q MUTANT OF UBIQUITIN CARBOXY TERMINAL TITLE 2 HYDROLASE L1 (UCH-L1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UCH-L1,NEURON CYTOPLASMIC PROTEIN 9.5,PGP 9.5,PGP9.5, COMPND 5 UBIQUITIN THIOESTERASE L1; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UCHL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, CYSTEINE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KENNY,K.J.BROWN,C.DAS REVDAT 2 22-MAY-24 8DY8 1 REMARK REVDAT 1 09-AUG-23 8DY8 0 JRNL AUTH S.KENNY,K.J.BROWN,C.DAS JRNL TITL ENHANCED CATALYTIC ACTIVITY OF THE UCHL1R178Q MUTANT IS DUE JRNL TITL 2 TO A MORE REACTIVE ACTIVE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 26475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9200 - 5.0600 1.00 2060 165 0.2068 0.2631 REMARK 3 2 5.0600 - 4.0200 1.00 1943 155 0.1603 0.2072 REMARK 3 3 4.0200 - 3.5100 1.00 1919 153 0.1771 0.2216 REMARK 3 4 3.5100 - 3.1900 1.00 1907 152 0.2246 0.2626 REMARK 3 5 3.1900 - 2.9600 1.00 1890 150 0.2646 0.3200 REMARK 3 6 2.9600 - 2.7900 1.00 1891 151 0.2834 0.3242 REMARK 3 7 2.7800 - 2.6500 1.00 1861 148 0.2930 0.2943 REMARK 3 8 2.6500 - 2.5300 1.00 1877 151 0.2954 0.3101 REMARK 3 9 2.5300 - 2.4300 0.99 1866 148 0.2577 0.3107 REMARK 3 10 2.4300 - 2.3500 0.97 1795 144 0.2775 0.3066 REMARK 3 11 2.3500 - 2.2800 0.91 1698 135 0.2910 0.2765 REMARK 3 12 2.2800 - 2.2100 0.84 1560 125 0.2979 0.3109 REMARK 3 13 2.2100 - 2.1500 0.71 1320 104 0.3457 0.3586 REMARK 3 14 2.1500 - 2.1000 0.50 932 75 0.3662 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3275 REMARK 3 ANGLE : 0.526 4438 REMARK 3 CHIRALITY : 0.040 505 REMARK 3 PLANARITY : 0.003 586 REMARK 3 DIHEDRAL : 4.997 446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7235 6.3487 18.4975 REMARK 3 T TENSOR REMARK 3 T11: 0.5007 T22: 0.3757 REMARK 3 T33: 0.4935 T12: 0.0403 REMARK 3 T13: 0.1435 T23: 0.1053 REMARK 3 L TENSOR REMARK 3 L11: 2.1456 L22: 4.0117 REMARK 3 L33: 6.1385 L12: -1.3237 REMARK 3 L13: 1.3081 L23: 1.3518 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: -0.2088 S13: -0.4594 REMARK 3 S21: 0.7529 S22: 0.1284 S23: 0.6001 REMARK 3 S31: 0.8402 S32: -0.2676 S33: 0.0023 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8275 15.4856 1.8651 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.4917 REMARK 3 T33: 0.3230 T12: -0.0718 REMARK 3 T13: 0.0213 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.8135 L22: 5.7287 REMARK 3 L33: 3.1262 L12: -0.4706 REMARK 3 L13: -1.0153 L23: -0.6804 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.9505 S13: 0.3546 REMARK 3 S21: -0.5139 S22: 0.2389 S23: -0.5182 REMARK 3 S31: 0.0176 S32: -0.1331 S33: -0.0719 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7496 23.4903 17.0487 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.2530 REMARK 3 T33: 0.3002 T12: 0.1277 REMARK 3 T13: 0.0155 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.4593 L22: 3.3122 REMARK 3 L33: 3.6051 L12: -0.2309 REMARK 3 L13: 0.6696 L23: -1.4812 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: -0.2511 S13: 0.2823 REMARK 3 S21: 0.5221 S22: 0.1344 S23: 0.2331 REMARK 3 S31: -0.4743 S32: -0.1732 S33: 0.0987 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9203 15.0836 28.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.6401 T22: 0.6234 REMARK 3 T33: 0.3253 T12: 0.2059 REMARK 3 T13: 0.0617 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 9.9166 L22: 7.3809 REMARK 3 L33: 7.9596 L12: -3.9217 REMARK 3 L13: 1.8748 L23: 5.9181 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.2549 S13: -0.2013 REMARK 3 S21: 0.4949 S22: 0.0160 S23: -0.1325 REMARK 3 S31: 0.0351 S32: 0.3916 S33: -0.2451 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9522 15.7566 6.0698 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2625 REMARK 3 T33: 0.2394 T12: -0.0080 REMARK 3 T13: 0.0478 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 6.6672 L22: 5.6927 REMARK 3 L33: 4.0761 L12: -1.8632 REMARK 3 L13: 2.8837 L23: -1.4711 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.1550 S13: 0.0402 REMARK 3 S21: -0.0728 S22: -0.1087 S23: -0.0806 REMARK 3 S31: -0.1194 S32: 0.0275 S33: 0.0525 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5650 6.7307 1.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.4704 T22: 0.3524 REMARK 3 T33: 0.4367 T12: -0.0208 REMARK 3 T13: -0.0851 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 7.6911 L22: 6.7708 REMARK 3 L33: 8.3586 L12: 0.5058 REMARK 3 L13: 1.0956 L23: -2.3704 REMARK 3 S TENSOR REMARK 3 S11: 0.3763 S12: 0.5980 S13: -0.1681 REMARK 3 S21: -0.4272 S22: 0.1286 S23: 0.4975 REMARK 3 S31: -0.3360 S32: 0.0918 S33: -0.4310 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3411 3.8179 8.0236 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.2669 REMARK 3 T33: 0.4179 T12: -0.0424 REMARK 3 T13: 0.0857 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 9.1106 L22: 6.8839 REMARK 3 L33: 2.9522 L12: -5.0416 REMARK 3 L13: -2.4941 L23: 2.9967 REMARK 3 S TENSOR REMARK 3 S11: 0.4069 S12: 1.6904 S13: -0.3538 REMARK 3 S21: -0.4310 S22: -0.2399 S23: 0.0021 REMARK 3 S31: -0.3270 S32: -0.8482 S33: -0.1853 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2630 54.4007 31.6721 REMARK 3 T TENSOR REMARK 3 T11: 0.4234 T22: 0.4478 REMARK 3 T33: 0.4363 T12: 0.0902 REMARK 3 T13: -0.0785 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 4.8413 L22: 3.1836 REMARK 3 L33: 7.0064 L12: -0.3619 REMARK 3 L13: 1.2824 L23: -1.1537 REMARK 3 S TENSOR REMARK 3 S11: -0.2952 S12: -0.4940 S13: 0.5895 REMARK 3 S21: 0.4326 S22: 0.0268 S23: -0.4495 REMARK 3 S31: -0.5231 S32: 0.6083 S33: 0.1752 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6000 38.2767 19.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.6534 T22: 0.4647 REMARK 3 T33: 0.4021 T12: -0.0012 REMARK 3 T13: 0.0679 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.2978 L22: 2.8305 REMARK 3 L33: 2.9980 L12: -1.2004 REMARK 3 L13: -0.7259 L23: 1.6578 REMARK 3 S TENSOR REMARK 3 S11: -0.8028 S12: 0.6096 S13: -0.5107 REMARK 3 S21: -0.2561 S22: 0.3112 S23: -0.0114 REMARK 3 S31: 0.5059 S32: 0.3400 S33: 0.3731 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2153 39.4170 35.1387 REMARK 3 T TENSOR REMARK 3 T11: 0.7724 T22: 0.8448 REMARK 3 T33: 0.4722 T12: 0.4176 REMARK 3 T13: 0.0841 T23: 0.1485 REMARK 3 L TENSOR REMARK 3 L11: 1.9774 L22: 1.0128 REMARK 3 L33: 2.7663 L12: -0.7564 REMARK 3 L13: -0.7873 L23: -0.4203 REMARK 3 S TENSOR REMARK 3 S11: -0.4933 S12: -1.0434 S13: -0.6745 REMARK 3 S21: 0.5411 S22: -0.0493 S23: -0.2396 REMARK 3 S31: 0.9656 S32: 1.3663 S33: 0.3440 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3447 46.2284 33.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.3486 T22: 0.4206 REMARK 3 T33: 0.3074 T12: 0.0614 REMARK 3 T13: -0.0431 T23: -0.0561 REMARK 3 L TENSOR REMARK 3 L11: 3.4024 L22: 2.0882 REMARK 3 L33: 8.1439 L12: -0.3503 REMARK 3 L13: -1.5024 L23: -1.9656 REMARK 3 S TENSOR REMARK 3 S11: -0.2584 S12: -0.8169 S13: 0.3813 REMARK 3 S21: 0.2597 S22: 0.4588 S23: 0.0704 REMARK 3 S31: 0.0554 S32: 0.1017 S33: -0.1404 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0425 48.8680 17.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.4311 T22: 0.5685 REMARK 3 T33: 0.3035 T12: 0.0451 REMARK 3 T13: 0.0331 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 5.7060 L22: 7.9294 REMARK 3 L33: 5.2303 L12: -2.4349 REMARK 3 L13: -2.7872 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.5706 S13: 0.3491 REMARK 3 S21: -0.3414 S22: 0.0030 S23: -0.4568 REMARK 3 S31: 0.1198 S32: 0.3167 S33: 0.0217 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3714 56.7165 24.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.4533 T22: 0.4284 REMARK 3 T33: 0.5509 T12: 0.0228 REMARK 3 T13: -0.0115 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.2249 L22: 3.8400 REMARK 3 L33: 4.6710 L12: 1.6423 REMARK 3 L13: 1.9094 L23: 2.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.8012 S13: 0.1297 REMARK 3 S21: 0.2137 S22: 0.2633 S23: -0.0244 REMARK 3 S31: -0.1581 S32: 0.6107 S33: -0.6768 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000257811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ETL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.69250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.69250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.69250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.69250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.69250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.69250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.69250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.69250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 458 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 459 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 151 REMARK 465 CYS A 152 REMARK 465 ARG A 153 REMARK 465 VAL A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 223 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 CYS B 152 REMARK 465 ARG B 153 REMARK 465 VAL B 154 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 ALA B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 VAL A 42 CG1 CG2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLN B 58 CG CD OE1 NE2 REMARK 470 HIS B 59 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ASP B 110 CG OD1 OD2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 ASP B 191 CG OD1 OD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 PHE B 204 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 65 CD CE NZ REMARK 480 GLU A 109 CD OE1 OE2 REMARK 480 LYS A 115 CD CE NZ REMARK 480 LYS A 123 CE NZ REMARK 480 LYS A 131 CD CE NZ REMARK 480 LYS A 135 CE NZ REMARK 480 LYS A 195 CD CE NZ REMARK 480 LYS A 199 CD CE NZ REMARK 480 LYS A 221 CD CE NZ REMARK 480 GLU B 69 CD OE1 OE2 REMARK 480 GLU B 109 OE1 OE2 REMARK 480 LYS B 131 CE NZ REMARK 480 LYS B 199 CD CE NZ REMARK 480 ARG B 207 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 70 52.81 -91.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 457 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 458 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH B 439 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B 440 DISTANCE = 8.65 ANGSTROMS DBREF 8DY8 A 1 223 UNP P09936 UCHL1_HUMAN 1 223 DBREF 8DY8 B 1 223 UNP P09936 UCHL1_HUMAN 1 223 SEQADV 8DY8 GLY A -4 UNP P09936 EXPRESSION TAG SEQADV 8DY8 PRO A -3 UNP P09936 EXPRESSION TAG SEQADV 8DY8 LEU A -2 UNP P09936 EXPRESSION TAG SEQADV 8DY8 GLY A -1 UNP P09936 EXPRESSION TAG SEQADV 8DY8 SER A 0 UNP P09936 EXPRESSION TAG SEQADV 8DY8 GLN A 178 UNP P09936 ARG 178 ENGINEERED MUTATION SEQADV 8DY8 GLY B -4 UNP P09936 EXPRESSION TAG SEQADV 8DY8 PRO B -3 UNP P09936 EXPRESSION TAG SEQADV 8DY8 LEU B -2 UNP P09936 EXPRESSION TAG SEQADV 8DY8 GLY B -1 UNP P09936 EXPRESSION TAG SEQADV 8DY8 SER B 0 UNP P09936 EXPRESSION TAG SEQADV 8DY8 GLN B 178 UNP P09936 ARG 178 ENGINEERED MUTATION SEQRES 1 A 228 GLY PRO LEU GLY SER MET GLN LEU LYS PRO MET GLU ILE SEQRES 2 A 228 ASN PRO GLU MET LEU ASN LYS VAL LEU SER ARG LEU GLY SEQRES 3 A 228 VAL ALA GLY GLN TRP ARG PHE VAL ASP VAL LEU GLY LEU SEQRES 4 A 228 GLU GLU GLU SER LEU GLY SER VAL PRO ALA PRO ALA CYS SEQRES 5 A 228 ALA LEU LEU LEU LEU PHE PRO LEU THR ALA GLN HIS GLU SEQRES 6 A 228 ASN PHE ARG LYS LYS GLN ILE GLU GLU LEU LYS GLY GLN SEQRES 7 A 228 GLU VAL SER PRO LYS VAL TYR PHE MET LYS GLN THR ILE SEQRES 8 A 228 GLY ASN SER CYS GLY THR ILE GLY LEU ILE HIS ALA VAL SEQRES 9 A 228 ALA ASN ASN GLN ASP LYS LEU GLY PHE GLU ASP GLY SER SEQRES 10 A 228 VAL LEU LYS GLN PHE LEU SER GLU THR GLU LYS MET SER SEQRES 11 A 228 PRO GLU ASP ARG ALA LYS CYS PHE GLU LYS ASN GLU ALA SEQRES 12 A 228 ILE GLN ALA ALA HIS ASP ALA VAL ALA GLN GLU GLY GLN SEQRES 13 A 228 CYS ARG VAL ASP ASP LYS VAL ASN PHE HIS PHE ILE LEU SEQRES 14 A 228 PHE ASN ASN VAL ASP GLY HIS LEU TYR GLU LEU ASP GLY SEQRES 15 A 228 GLN MET PRO PHE PRO VAL ASN HIS GLY ALA SER SER GLU SEQRES 16 A 228 ASP THR LEU LEU LYS ASP ALA ALA LYS VAL CYS ARG GLU SEQRES 17 A 228 PHE THR GLU ARG GLU GLN GLY GLU VAL ARG PHE SER ALA SEQRES 18 A 228 VAL ALA LEU CYS LYS ALA ALA SEQRES 1 B 228 GLY PRO LEU GLY SER MET GLN LEU LYS PRO MET GLU ILE SEQRES 2 B 228 ASN PRO GLU MET LEU ASN LYS VAL LEU SER ARG LEU GLY SEQRES 3 B 228 VAL ALA GLY GLN TRP ARG PHE VAL ASP VAL LEU GLY LEU SEQRES 4 B 228 GLU GLU GLU SER LEU GLY SER VAL PRO ALA PRO ALA CYS SEQRES 5 B 228 ALA LEU LEU LEU LEU PHE PRO LEU THR ALA GLN HIS GLU SEQRES 6 B 228 ASN PHE ARG LYS LYS GLN ILE GLU GLU LEU LYS GLY GLN SEQRES 7 B 228 GLU VAL SER PRO LYS VAL TYR PHE MET LYS GLN THR ILE SEQRES 8 B 228 GLY ASN SER CYS GLY THR ILE GLY LEU ILE HIS ALA VAL SEQRES 9 B 228 ALA ASN ASN GLN ASP LYS LEU GLY PHE GLU ASP GLY SER SEQRES 10 B 228 VAL LEU LYS GLN PHE LEU SER GLU THR GLU LYS MET SER SEQRES 11 B 228 PRO GLU ASP ARG ALA LYS CYS PHE GLU LYS ASN GLU ALA SEQRES 12 B 228 ILE GLN ALA ALA HIS ASP ALA VAL ALA GLN GLU GLY GLN SEQRES 13 B 228 CYS ARG VAL ASP ASP LYS VAL ASN PHE HIS PHE ILE LEU SEQRES 14 B 228 PHE ASN ASN VAL ASP GLY HIS LEU TYR GLU LEU ASP GLY SEQRES 15 B 228 GLN MET PRO PHE PRO VAL ASN HIS GLY ALA SER SER GLU SEQRES 16 B 228 ASP THR LEU LEU LYS ASP ALA ALA LYS VAL CYS ARG GLU SEQRES 17 B 228 PHE THR GLU ARG GLU GLN GLY GLU VAL ARG PHE SER ALA SEQRES 18 B 228 VAL ALA LEU CYS LYS ALA ALA HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET MG B 302 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 MG MG 2+ FORMUL 7 HOH *99(H2 O) HELIX 1 AA1 ASN A 9 LEU A 20 1 12 HELIX 2 AA2 GLU A 35 VAL A 42 5 8 HELIX 3 AA3 THR A 56 LYS A 71 1 16 HELIX 4 AA4 SER A 89 ASN A 101 1 13 HELIX 5 AA5 SER A 112 THR A 121 1 10 HELIX 6 AA6 SER A 125 ASN A 136 1 12 HELIX 7 AA7 ASN A 136 GLN A 148 1 13 HELIX 8 AA8 SER A 189 ASP A 191 5 3 HELIX 9 AA9 THR A 192 ARG A 207 1 16 HELIX 10 AB1 ASN B 9 LEU B 20 1 12 HELIX 11 AB2 GLU B 36 GLY B 40 5 5 HELIX 12 AB3 THR B 56 GLU B 69 1 14 HELIX 13 AB4 SER B 89 ASN B 101 1 13 HELIX 14 AB5 SER B 112 THR B 121 1 10 HELIX 15 AB6 SER B 125 LYS B 135 1 11 HELIX 16 AB7 ASN B 136 GLN B 148 1 13 HELIX 17 AB8 SER B 189 ASP B 191 5 3 HELIX 18 AB9 THR B 192 GLU B 208 1 17 SHEET 1 AA1 2 VAL A 22 ALA A 23 0 SHEET 2 AA1 2 GLY A 107 PHE A 108 -1 O GLY A 107 N ALA A 23 SHEET 1 AA2 6 TRP A 26 VAL A 31 0 SHEET 2 AA2 6 SER A 215 LYS A 221 -1 O CYS A 220 N ARG A 27 SHEET 3 AA2 6 ALA A 46 PRO A 54 -1 N LEU A 52 O SER A 215 SHEET 4 AA2 6 PHE A 160 VAL A 168 -1 O PHE A 165 N LEU A 49 SHEET 5 AA2 6 HIS A 171 ASP A 176 -1 O LEU A 175 N LEU A 164 SHEET 6 AA2 6 VAL A 183 ALA A 187 -1 O HIS A 185 N LEU A 172 SHEET 1 AA3 2 VAL B 22 ALA B 23 0 SHEET 2 AA3 2 GLY B 107 PHE B 108 -1 O GLY B 107 N ALA B 23 SHEET 1 AA4 6 ARG B 27 ASP B 30 0 SHEET 2 AA4 6 SER B 215 CYS B 220 -1 O CYS B 220 N ARG B 27 SHEET 3 AA4 6 ALA B 46 PRO B 54 -1 N LEU B 52 O SER B 215 SHEET 4 AA4 6 PHE B 160 VAL B 168 -1 O PHE B 165 N LEU B 49 SHEET 5 AA4 6 HIS B 171 LEU B 175 -1 O LEU B 175 N LEU B 164 SHEET 6 AA4 6 VAL B 183 ALA B 187 -1 O HIS B 185 N LEU B 172 CISPEP 1 ALA A 44 PRO A 45 0 1.30 CISPEP 2 ALA B 44 PRO B 45 0 0.80 CRYST1 109.385 109.385 79.202 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012626 0.00000