HEADER ELECTRON TRANSPORT 08-AUG-22 8DZL TITLE STRUCTURE OF THE K39Q MUTANT OF RAT SOMATIC CYTOCHROME C AT 1.36A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C, SOMATIC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CYCS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS COMPLEX IV, COMPLEX III, APOPTOSIS, ISCHEMIA, SKELETAL MUSCLE, KEYWDS 2 ACETYLATION, OXIDOREDUCTASE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.F.P.EDWARDS,M.HUETTEMANN,A.VAISHNAV,J.BRUNZELLE,P.MORSE,J.WAN REVDAT 4 06-NOV-24 8DZL 1 REMARK REVDAT 3 25-OCT-23 8DZL 1 REMARK REVDAT 2 26-JUL-23 8DZL 1 JRNL REVDAT 1 19-JUL-23 8DZL 0 JRNL AUTH P.T.MORSE,G.PEREZ-MEJIAS,J.WAN,A.A.TURNER,I.MARQUEZ, JRNL AUTH 2 H.A.KALPAGE,A.VAISHNAV,M.P.ZUREK,P.P.HUETTEMANN,K.KIM, JRNL AUTH 3 T.ARROUM,M.A.DE LA ROSA,D.D.CHOWDHURY,I.LEE,J.S.BRUNZELLE, JRNL AUTH 4 T.H.SANDERSON,M.H.MALEK,D.MEIERHOFER,B.F.P.EDWARDS, JRNL AUTH 5 I.DIAZ-MORENO,M.HUTTEMANN JRNL TITL CYTOCHROME C LYSINE ACETYLATION REGULATES CELLULAR JRNL TITL 2 RESPIRATION AND CELL DEATH IN ISCHEMIC SKELETAL MUSCLE. JRNL REF NAT COMMUN V. 14 4166 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37443314 JRNL DOI 10.1038/S41467-023-39820-8 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 83395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.1000 - 4.2300 1.00 2903 138 0.1422 0.1397 REMARK 3 2 4.2300 - 3.3500 1.00 2752 138 0.1298 0.1499 REMARK 3 3 3.3500 - 2.9300 1.00 2733 148 0.1559 0.1898 REMARK 3 4 2.9300 - 2.6600 0.99 2665 144 0.1533 0.1968 REMARK 3 5 2.6600 - 2.4700 1.00 2689 127 0.1464 0.1975 REMARK 3 6 2.4700 - 2.3300 1.00 2656 133 0.1532 0.2146 REMARK 3 7 2.3300 - 2.2100 1.00 2658 153 0.1459 0.2048 REMARK 3 8 2.2100 - 2.1100 1.00 2581 153 0.1294 0.1809 REMARK 3 9 2.1100 - 2.0300 1.00 2697 143 0.1270 0.1568 REMARK 3 10 2.0300 - 1.9600 1.00 2634 139 0.1292 0.1783 REMARK 3 11 1.9600 - 1.9000 1.00 2634 142 0.1286 0.1572 REMARK 3 12 1.9000 - 1.8500 1.00 2649 118 0.1293 0.1783 REMARK 3 13 1.8500 - 1.8000 1.00 2626 142 0.1280 0.1740 REMARK 3 14 1.8000 - 1.7500 1.00 2609 148 0.1291 0.1695 REMARK 3 15 1.7500 - 1.7100 1.00 2640 147 0.1237 0.2041 REMARK 3 16 1.7100 - 1.6800 1.00 2596 141 0.1306 0.1788 REMARK 3 17 1.6800 - 1.6400 0.99 2647 136 0.1326 0.1853 REMARK 3 18 1.6400 - 1.6100 1.00 2568 151 0.1236 0.1833 REMARK 3 19 1.6100 - 1.5800 1.00 2624 127 0.1259 0.1853 REMARK 3 20 1.5800 - 1.5600 1.00 2650 126 0.1312 0.1852 REMARK 3 21 1.5600 - 1.5300 0.99 2566 132 0.1334 0.1863 REMARK 3 22 1.5300 - 1.5100 1.00 2627 140 0.1440 0.1973 REMARK 3 23 1.5100 - 1.4900 1.00 2611 136 0.1468 0.1967 REMARK 3 24 1.4900 - 1.4700 1.00 2566 135 0.1457 0.1921 REMARK 3 25 1.4700 - 1.4500 1.00 2626 142 0.1554 0.2235 REMARK 3 26 1.4500 - 1.4300 1.00 2631 126 0.1567 0.2382 REMARK 3 27 1.4300 - 1.4100 1.00 2619 120 0.1723 0.2362 REMARK 3 28 1.4100 - 1.3900 1.00 2560 130 0.1741 0.2727 REMARK 3 29 1.3900 - 1.3800 1.00 2642 146 0.1860 0.2280 REMARK 3 30 1.3800 - 1.3600 1.00 2602 133 0.2068 0.2531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.116 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3488 REMARK 3 ANGLE : 1.467 4716 REMARK 3 CHIRALITY : 0.092 452 REMARK 3 PLANARITY : 0.016 588 REMARK 3 DIHEDRAL : 12.997 472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12713 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 58.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5C0Z REMARK 200 REMARK 200 REMARK: RED CRYSTALS: 0.2 X 0.1 RECTANGLAR BRICKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD CRYO 2#30: 40% PEG 600, 100MM REMARK 280 SODIUM CITRATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.78900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.03250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.57650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.03250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.78900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.57650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 398 O HOH C 325 1.97 REMARK 500 O HIS D 26 O HOH D 301 2.09 REMARK 500 O HOH B 371 O HOH B 395 2.10 REMARK 500 O HOH B 384 O HOH B 394 2.11 REMARK 500 NE2 HIS D 26 O ALA D 44 2.14 REMARK 500 NE2 HIS C 26 O ALA C 44 2.14 REMARK 500 NE2 GLN B 39 O HOH B 301 2.15 REMARK 500 O HOH D 429 O HOH D 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN D 16 CG GLN D 16 CD 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 2 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -134.26 -122.82 REMARK 500 ASN A 70 88.54 -163.23 REMARK 500 LYS B 27 -136.29 -116.54 REMARK 500 ASN B 70 87.31 -162.54 REMARK 500 LYS C 27 -138.39 -120.72 REMARK 500 ASN C 70 88.93 -165.30 REMARK 500 LYS D 27 -140.79 -119.11 REMARK 500 ASN D 70 88.90 -166.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 416 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH D 438 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH D 439 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 88.2 REMARK 620 3 HEC A 201 NB 87.8 89.6 REMARK 620 4 HEC A 201 NC 89.6 177.6 91.1 REMARK 620 5 HEC A 201 ND 90.8 89.4 178.3 89.8 REMARK 620 6 MET A 80 SD 175.7 88.0 94.0 94.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 88.8 REMARK 620 3 HEC B 201 NB 88.6 90.3 REMARK 620 4 HEC B 201 NC 88.7 177.4 90.3 REMARK 620 5 HEC B 201 ND 90.1 90.7 178.4 88.7 REMARK 620 6 MET B 80 SD 174.4 86.4 94.2 96.1 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 18 NE2 REMARK 620 2 HEC C 201 NA 89.3 REMARK 620 3 HEC C 201 NB 87.9 90.3 REMARK 620 4 HEC C 201 NC 89.7 178.5 90.8 REMARK 620 5 HEC C 201 ND 91.1 89.4 178.9 89.5 REMARK 620 6 MET C 80 SD 174.3 85.4 94.2 95.6 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 18 NE2 REMARK 620 2 HEC D 201 NA 89.2 REMARK 620 3 HEC D 201 NB 87.5 90.6 REMARK 620 4 HEC D 201 NC 89.6 178.7 89.7 REMARK 620 5 HEC D 201 ND 90.8 90.2 178.1 89.5 REMARK 620 6 MET D 80 SD 174.8 86.0 94.4 95.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DVX RELATED DB: PDB REMARK 900 PIG CYTOCHROME C (ALY39) DBREF 8DZL A 1 104 UNP P62898 CYC_RAT 2 105 DBREF 8DZL B 1 104 UNP P62898 CYC_RAT 2 105 DBREF 8DZL C 1 104 UNP P62898 CYC_RAT 2 105 DBREF 8DZL D 1 104 UNP P62898 CYC_RAT 2 105 SEQADV 8DZL GLN A 39 UNP P62898 LYS 40 ENGINEERED MUTATION SEQADV 8DZL GLN B 39 UNP P62898 LYS 40 ENGINEERED MUTATION SEQADV 8DZL GLN C 39 UNP P62898 LYS 40 ENGINEERED MUTATION SEQADV 8DZL GLN D 39 UNP P62898 LYS 40 ENGINEERED MUTATION SEQRES 1 A 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 A 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 A 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG GLN SEQRES 4 A 104 THR GLY GLN ALA ALA GLY PHE SER TYR THR ASP ALA ASN SEQRES 5 A 104 LYS ASN LYS GLY ILE THR TRP GLY GLU ASP THR LEU MET SEQRES 6 A 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 A 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS GLY GLU ARG SEQRES 8 A 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU SEQRES 1 B 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 B 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 B 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG GLN SEQRES 4 B 104 THR GLY GLN ALA ALA GLY PHE SER TYR THR ASP ALA ASN SEQRES 5 B 104 LYS ASN LYS GLY ILE THR TRP GLY GLU ASP THR LEU MET SEQRES 6 B 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 B 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS GLY GLU ARG SEQRES 8 B 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU SEQRES 1 C 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 C 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 C 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG GLN SEQRES 4 C 104 THR GLY GLN ALA ALA GLY PHE SER TYR THR ASP ALA ASN SEQRES 5 C 104 LYS ASN LYS GLY ILE THR TRP GLY GLU ASP THR LEU MET SEQRES 6 C 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 C 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS GLY GLU ARG SEQRES 8 C 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU SEQRES 1 D 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 D 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 D 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG GLN SEQRES 4 D 104 THR GLY GLN ALA ALA GLY PHE SER TYR THR ASP ALA ASN SEQRES 5 D 104 LYS ASN LYS GLY ILE THR TRP GLY GLU ASP THR LEU MET SEQRES 6 D 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 D 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS GLY GLU ARG SEQRES 8 D 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU HET HEC A 201 43 HET HEC B 201 43 HET HEC C 201 43 HET HEC D 201 43 HETNAM HEC HEME C FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 9 HOH *484(H2 O) HELIX 1 AA1 ASP A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 54 1 6 HELIX 3 AA3 GLY A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 ASP B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 ASN B 54 1 6 HELIX 8 AA8 GLY B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 HELIX 11 AB2 ASP C 2 CYS C 14 1 13 HELIX 12 AB3 THR C 49 ASN C 54 1 6 HELIX 13 AB4 GLY C 60 ASN C 70 1 11 HELIX 14 AB5 ASN C 70 ILE C 75 1 6 HELIX 15 AB6 LYS C 87 THR C 102 1 16 HELIX 16 AB7 ASP D 2 CYS D 14 1 13 HELIX 17 AB8 THR D 49 ASN D 54 1 6 HELIX 18 AB9 GLY D 60 ASN D 70 1 11 HELIX 19 AC1 ASN D 70 ILE D 75 1 6 HELIX 20 AC2 LYS D 87 THR D 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.76 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.83 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.76 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.82 LINK SG CYS C 14 CAB HEC C 201 1555 1555 1.76 LINK SG CYS C 17 CAC HEC C 201 1555 1555 1.83 LINK SG CYS D 14 CAB HEC D 201 1555 1555 1.77 LINK SG CYS D 17 CAC HEC D 201 1555 1555 1.84 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.00 LINK SD MET A 80 FE HEC A 201 1555 1555 2.28 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 1.94 LINK SD MET B 80 FE HEC B 201 1555 1555 2.32 LINK NE2 HIS C 18 FE HEC C 201 1555 1555 1.99 LINK SD MET C 80 FE HEC C 201 1555 1555 2.33 LINK NE2 HIS D 18 FE HEC D 201 1555 1555 1.97 LINK SD MET D 80 FE HEC D 201 1555 1555 2.28 CRYST1 33.578 61.153 186.065 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005374 0.00000