HEADER SIGNALING PROTEIN 08-AUG-22 8DZO TITLE CRYSTAL STRUCTURE OF HUMAN SAR1T39N MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN SAR1A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COPII-ASSOCIATED SMALL GTPASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAR1A, SAR1, SARA, SARA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SAR1, SAR1A, COPII, SMALL GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUANG REVDAT 3 25-OCT-23 8DZO 1 REMARK REVDAT 2 22-MAR-23 8DZO 1 JRNL REVDAT 1 30-NOV-22 8DZO 0 JRNL AUTH Q.HUANG,D.M.E.SZEBENYI JRNL TITL THE ALARMONE PPGPP SELECTIVELY INHIBITS THE ISOFORM A OF THE JRNL TITL 2 HUMAN SMALL GTPASE SAR1. JRNL REF PROTEINS V. 91 518 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 36369712 JRNL DOI 10.1002/PROT.26445 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4010 - 4.3367 0.98 2380 138 0.1663 0.2219 REMARK 3 2 4.3367 - 3.4430 1.00 2410 140 0.1476 0.1575 REMARK 3 3 3.4430 - 3.0080 1.00 2450 146 0.1578 0.2034 REMARK 3 4 3.0080 - 2.7331 1.00 2409 148 0.1719 0.1887 REMARK 3 5 2.7331 - 2.5373 1.00 2384 138 0.1660 0.1908 REMARK 3 6 2.5373 - 2.3877 1.00 2450 141 0.1594 0.1884 REMARK 3 7 2.3877 - 2.2681 1.00 2406 140 0.1633 0.2012 REMARK 3 8 2.2681 - 2.1694 1.00 2416 142 0.1587 0.1876 REMARK 3 9 2.1694 - 2.0859 1.00 2425 146 0.1588 0.1849 REMARK 3 10 2.0859 - 2.0139 1.00 2409 138 0.1498 0.1881 REMARK 3 11 2.0139 - 1.9510 1.00 2425 148 0.1552 0.1982 REMARK 3 12 1.9510 - 1.8952 1.00 2393 144 0.1525 0.2097 REMARK 3 13 1.8952 - 1.8453 1.00 2424 144 0.1549 0.2276 REMARK 3 14 1.8453 - 1.8003 1.00 2389 141 0.1741 0.2224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2681 REMARK 3 ANGLE : 0.920 3630 REMARK 3 CHIRALITY : 0.057 413 REMARK 3 PLANARITY : 0.004 441 REMARK 3 DIHEDRAL : 17.186 1566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4558 -24.2778 -10.5039 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.0602 REMARK 3 T33: 0.0994 T12: 0.0081 REMARK 3 T13: 0.0192 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.3130 L22: 0.2104 REMARK 3 L33: 0.1530 L12: -0.2587 REMARK 3 L13: 0.0122 L23: -0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0343 S13: -0.1117 REMARK 3 S21: 0.1158 S22: 0.0164 S23: -0.0577 REMARK 3 S31: 0.1623 S32: 0.0676 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1140 -17.0635 -7.8278 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1520 REMARK 3 T33: 0.1730 T12: 0.0068 REMARK 3 T13: 0.0147 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2152 L22: 0.4013 REMARK 3 L33: 0.2539 L12: -0.1334 REMARK 3 L13: 0.2172 L23: -0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.0330 S13: 0.0827 REMARK 3 S21: 0.0259 S22: 0.0059 S23: -0.1798 REMARK 3 S31: -0.0183 S32: 0.1321 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9309 -7.3891 -9.3649 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.1395 REMARK 3 T33: 0.1812 T12: -0.0045 REMARK 3 T13: 0.0130 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.1882 L22: 0.4174 REMARK 3 L33: 0.1150 L12: -0.2003 REMARK 3 L13: 0.0406 L23: -0.1952 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: 0.0209 S13: 0.1530 REMARK 3 S21: -0.0278 S22: 0.0195 S23: -0.2332 REMARK 3 S31: 0.0493 S32: 0.0161 S33: -0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3814 -14.7464 -12.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1246 REMARK 3 T33: 0.1190 T12: 0.0150 REMARK 3 T13: -0.0153 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9310 L22: 0.6059 REMARK 3 L33: 0.2976 L12: 0.2861 REMARK 3 L13: 0.1916 L23: 0.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.1277 S13: -0.0514 REMARK 3 S21: -0.1398 S22: -0.0312 S23: 0.1457 REMARK 3 S31: -0.0305 S32: -0.1027 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5297 -26.3957 -13.0499 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1463 REMARK 3 T33: 0.1677 T12: 0.0007 REMARK 3 T13: -0.0133 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5817 L22: 0.6511 REMARK 3 L33: 0.3685 L12: 0.6235 REMARK 3 L13: 0.0267 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0546 S13: 0.0158 REMARK 3 S21: -0.0812 S22: 0.0029 S23: -0.1109 REMARK 3 S31: -0.1275 S32: 0.1305 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4057 -35.7088 -11.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1199 REMARK 3 T33: 0.1183 T12: -0.0022 REMARK 3 T13: 0.0043 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.0418 L22: 0.9070 REMARK 3 L33: 0.4499 L12: 0.3326 REMARK 3 L13: -0.1191 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.0891 S13: -0.0334 REMARK 3 S21: 0.0974 S22: -0.0344 S23: 0.0276 REMARK 3 S31: 0.0403 S32: -0.0513 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8DZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.16 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8DZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350 (W/V), 0.1M CACL2, 0.1M REMARK 280 MES-HCL BUFFER, PH6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.13467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.26933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.20200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 185.33667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.06733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 TRP A 7 REMARK 465 ILE A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 ASP A 47 REMARK 465 ASP A 48 REMARK 465 ARG A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 HIS A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 THR A 56 REMARK 465 LEU A 57 REMARK 465 HIS A 58 REMARK 465 PRO A 59 REMARK 465 HIS A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 VAL A 163 REMARK 465 THR A 164 REMARK 465 LEU A 165 REMARK 465 LYS A 166 REMARK 465 GLU A 167 REMARK 465 LEU A 168 REMARK 465 ASN A 169 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 TRP B 7 REMARK 465 ILE B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 PHE B 12 REMARK 465 ASP B 48 REMARK 465 ARG B 49 REMARK 465 LEU B 50 REMARK 465 GLY B 51 REMARK 465 GLN B 52 REMARK 465 HIS B 53 REMARK 465 VAL B 54 REMARK 465 PRO B 55 REMARK 465 THR B 56 REMARK 465 LEU B 57 REMARK 465 HIS B 58 REMARK 465 PRO B 59 REMARK 465 GLY B 78 REMARK 465 HIS B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 VAL B 163 REMARK 465 THR B 164 REMARK 465 LEU B 165 REMARK 465 LYS B 166 REMARK 465 GLU B 167 REMARK 465 LEU B 168 REMARK 465 ASN B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 347 O HOH B 421 2.14 REMARK 500 O HOH A 479 O HOH A 485 2.16 REMARK 500 O HOH A 396 O HOH A 405 2.16 REMARK 500 O HOH B 452 O HOH B 473 2.17 REMARK 500 O HOH B 335 O HOH B 359 2.17 REMARK 500 N SER A 14 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 346 O HOH B 337 1455 2.03 REMARK 500 O HOH A 405 O HOH B 412 6445 2.17 REMARK 500 O HOH A 346 O HOH B 316 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 4.23 81.08 REMARK 500 ALA A 67 -126.58 50.99 REMARK 500 ALA A 92 79.10 -116.41 REMARK 500 LYS A 135 36.02 72.34 REMARK 500 ASN B 35 4.62 80.10 REMARK 500 ALA B 67 -125.60 51.83 REMARK 500 LYS B 135 36.80 71.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 75 OD1 95.0 REMARK 620 3 ASP A 75 OD2 88.2 50.2 REMARK 620 4 G4P A 204 O2B 83.6 82.9 131.5 REMARK 620 5 HOH A 328 O 168.9 82.5 98.3 85.4 REMARK 620 6 HOH A 354 O 92.4 128.0 78.8 149.0 97.7 REMARK 620 7 HOH A 376 O 91.2 154.4 155.0 73.1 86.6 76.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 103 O REMARK 620 2 ASP A 140 OD2 92.0 REMARK 620 3 HOH A 307 O 3.7 94.2 REMARK 620 4 HOH A 444 O 5.8 94.1 2.5 REMARK 620 5 G4P B 204 O2C 6.7 91.1 4.8 3.3 REMARK 620 6 G4P B 204 O2D 6.4 93.7 3.2 0.8 2.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD2 REMARK 620 2 SER A 106 OG 89.4 REMARK 620 3 G4P B 204 O1C 25.2 84.4 REMARK 620 4 G4P B 204 O1D 26.4 81.5 3.0 REMARK 620 5 HOH B 363 O 27.6 85.8 3.0 4.9 REMARK 620 6 HOH B 370 O 28.8 82.9 3.7 3.2 3.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P A 204 O2C REMARK 620 2 G4P A 204 O2D 84.5 REMARK 620 3 HOH A 374 O 92.1 170.3 REMARK 620 4 HOH A 375 O 95.1 85.7 85.5 REMARK 620 5 ASP B 104 OD2 109.2 85.5 87.1 14.2 REMARK 620 6 SER B 106 OG 108.1 82.9 89.5 13.7 2.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P A 204 O1C REMARK 620 2 G4P A 204 O1D 84.2 REMARK 620 3 ALA B 103 O 75.0 58.5 REMARK 620 4 ASP B 140 OD2 72.5 61.9 4.1 REMARK 620 5 HOH B 442 O 94.4 92.6 38.3 36.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 34 OD2 REMARK 620 2 ASP B 75 OD1 96.8 REMARK 620 3 ASP B 75 OD2 87.8 50.8 REMARK 620 4 G4P B 204 O1B 85.3 83.5 132.5 REMARK 620 5 HOH B 332 O 170.9 81.7 98.1 85.6 REMARK 620 6 HOH B 369 O 91.6 153.2 155.4 71.9 86.0 REMARK 620 7 HOH B 425 O 93.0 127.9 78.8 148.4 95.0 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8DZM RELATED DB: PDB REMARK 900 MUTANT DBREF 8DZO A 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 DBREF 8DZO B 1 198 UNP Q9NR31 SAR1A_HUMAN 1 198 SEQADV 8DZO GLN A 39 UNP Q9NR31 THR 39 ENGINEERED MUTATION SEQADV 8DZO GLN B 39 UNP Q9NR31 THR 39 ENGINEERED MUTATION SEQRES 1 A 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 A 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 A 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS GLN SEQRES 4 A 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 A 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 A 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 A 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 A 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 A 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 A 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 A 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 A 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 A 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 A 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 A 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 A 198 TYR ILE ASP SEQRES 1 B 198 MET SER PHE ILE PHE GLU TRP ILE TYR ASN GLY PHE SER SEQRES 2 B 198 SER VAL LEU GLN PHE LEU GLY LEU TYR LYS LYS SER GLY SEQRES 3 B 198 LYS LEU VAL PHE LEU GLY LEU ASP ASN ALA GLY LYS GLN SEQRES 4 B 198 THR LEU LEU HIS MET LEU LYS ASP ASP ARG LEU GLY GLN SEQRES 5 B 198 HIS VAL PRO THR LEU HIS PRO THR SER GLU GLU LEU THR SEQRES 6 B 198 ILE ALA GLY MET THR PHE THR THR PHE ASP LEU GLY GLY SEQRES 7 B 198 HIS GLU GLN ALA ARG ARG VAL TRP LYS ASN TYR LEU PRO SEQRES 8 B 198 ALA ILE ASN GLY ILE VAL PHE LEU VAL ASP CYS ALA ASP SEQRES 9 B 198 HIS SER ARG LEU VAL GLU SER LYS VAL GLU LEU ASN ALA SEQRES 10 B 198 LEU MET THR ASP GLU THR ILE SER ASN VAL PRO ILE LEU SEQRES 11 B 198 ILE LEU GLY ASN LYS ILE ASP ARG THR ASP ALA ILE SER SEQRES 12 B 198 GLU GLU LYS LEU ARG GLU ILE PHE GLY LEU TYR GLY GLN SEQRES 13 B 198 THR THR GLY LYS GLY ASN VAL THR LEU LYS GLU LEU ASN SEQRES 14 B 198 ALA ARG PRO MET GLU VAL PHE MET CYS SER VAL LEU LYS SEQRES 15 B 198 ARG GLN GLY TYR GLY GLU GLY PHE ARG TRP LEU SER GLN SEQRES 16 B 198 TYR ILE ASP HET MG A 201 1 HET CA A 202 1 HET CA A 203 1 HET G4P A 204 36 HET CA B 201 1 HET CA B 202 1 HET CA B 203 1 HET G4P B 204 36 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 3 MG MG 2+ FORMUL 4 CA 5(CA 2+) FORMUL 6 G4P 2(C10 H17 N5 O17 P4) FORMUL 11 HOH *370(H2 O) HELIX 1 AA1 SER A 14 LEU A 19 1 6 HELIX 2 AA2 GLY A 37 LYS A 46 1 10 HELIX 3 AA3 ARG A 84 LEU A 90 1 7 HELIX 4 AA4 ASP A 104 SER A 106 5 3 HELIX 5 AA5 ARG A 107 THR A 120 1 14 HELIX 6 AA6 ASP A 121 SER A 125 5 5 HELIX 7 AA7 SER A 143 GLY A 152 1 10 HELIX 8 AA8 GLY A 185 GLN A 195 1 11 HELIX 9 AA9 SER B 14 LEU B 19 1 6 HELIX 10 AB1 GLY B 37 ASP B 47 1 11 HELIX 11 AB2 ARG B 83 LEU B 90 1 8 HELIX 12 AB3 ASP B 104 SER B 106 5 3 HELIX 13 AB4 ARG B 107 ASP B 121 1 15 HELIX 14 AB5 GLU B 122 SER B 125 5 4 HELIX 15 AB6 SER B 143 GLY B 152 1 10 HELIX 16 AB7 GLY B 185 GLN B 195 1 11 SHEET 1 AA1 6 GLU A 63 ILE A 66 0 SHEET 2 AA1 6 MET A 69 THR A 73 -1 O PHE A 71 N LEU A 64 SHEET 3 AA1 6 GLY A 26 LEU A 31 1 N LEU A 28 O THR A 70 SHEET 4 AA1 6 GLY A 95 ASP A 101 1 O VAL A 97 N VAL A 29 SHEET 5 AA1 6 ILE A 129 ASN A 134 1 O LEU A 130 N ILE A 96 SHEET 6 AA1 6 MET A 173 MET A 177 1 O GLU A 174 N ILE A 131 SHEET 1 AA2 6 GLU B 63 ILE B 66 0 SHEET 2 AA2 6 MET B 69 LEU B 76 -1 O PHE B 71 N LEU B 64 SHEET 3 AA2 6 GLY B 26 LEU B 33 1 N LEU B 28 O THR B 70 SHEET 4 AA2 6 GLY B 95 ASP B 101 1 O VAL B 97 N VAL B 29 SHEET 5 AA2 6 ILE B 129 ASN B 134 1 O LEU B 130 N ILE B 96 SHEET 6 AA2 6 MET B 173 MET B 177 1 O GLU B 174 N ILE B 131 LINK OD1 ASP A 34 MG MG A 201 1555 1555 2.19 LINK OD1 ASP A 75 MG MG A 201 1555 1555 2.69 LINK OD2 ASP A 75 MG MG A 201 1555 1555 2.47 LINK O ALA A 103 CA CA B 203 1555 6445 2.26 LINK OD2 ASP A 104 CA CA B 202 1555 6445 2.30 LINK OG SER A 106 CA CA B 202 1555 6445 2.45 LINK OD2 ASP A 140 CA CA B 203 1555 6445 2.36 LINK MG MG A 201 O2B G4P A 204 1555 1555 2.35 LINK MG MG A 201 O HOH A 328 1555 1555 2.35 LINK MG MG A 201 O HOH A 354 1555 1555 2.34 LINK MG MG A 201 O HOH A 376 1555 1555 2.54 LINK CA CA A 202 O2C G4P A 204 1555 1555 2.34 LINK CA CA A 202 O2D G4P A 204 1555 1555 2.32 LINK CA CA A 202 O HOH A 374 1555 1555 2.33 LINK CA CA A 202 O HOH A 375 1555 1555 2.37 LINK CA CA A 202 OD2 ASP B 104 5654 1555 2.31 LINK CA CA A 202 OG SER B 106 5654 1555 2.43 LINK CA CA A 203 O1C G4P A 204 1555 1555 2.32 LINK CA CA A 203 O1D G4P A 204 1555 1555 2.28 LINK CA CA A 203 O ALA B 103 5654 1555 2.26 LINK CA CA A 203 OD2 ASP B 140 5654 1555 2.18 LINK CA CA A 203 O HOH B 442 1555 6445 2.35 LINK O HOH A 307 CA CA B 203 5654 1555 2.26 LINK O HOH A 444 CA CA B 203 5654 1555 2.37 LINK OD2 ASP B 34 CA CA B 201 1555 1555 2.24 LINK OD1 ASP B 75 CA CA B 201 1555 1555 2.65 LINK OD2 ASP B 75 CA CA B 201 1555 1555 2.47 LINK CA CA B 201 O1B G4P B 204 1555 1555 2.35 LINK CA CA B 201 O HOH B 332 1555 1555 2.41 LINK CA CA B 201 O HOH B 369 1555 1555 2.46 LINK CA CA B 201 O HOH B 425 1555 1555 2.38 LINK CA CA B 202 O1C G4P B 204 1555 1555 2.33 LINK CA CA B 202 O1D G4P B 204 1555 1555 2.33 LINK CA CA B 202 O HOH B 363 1555 1555 2.33 LINK CA CA B 202 O HOH B 370 1555 1555 2.36 LINK CA CA B 203 O2C G4P B 204 1555 1555 2.31 LINK CA CA B 203 O2D G4P B 204 1555 1555 2.29 CRYST1 55.605 55.605 222.404 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017984 0.010383 0.000000 0.00000 SCALE2 0.000000 0.020766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004496 0.00000