HEADER VIRAL PROTEIN 09-AUG-22 8E15 TITLE A COMPUTATIONALLY STABILIZED HMPV F PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: F2 PROTEIN; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: F1 PROTEIN WITH FIBRITIN PEPTIDE; COMPND 7 CHAIN: G; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: 293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS, ENTEROBACTERIA PHAGE T2; SOURCE 10 ORGANISM_COMMON: BACTERIOPHAGE T2; SOURCE 11 ORGANISM_TAXID: 162145, 10664; SOURCE 12 GENE: F, WAC, ECT2_00172; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: 293 KEYWDS HUMAN METAPNEUMOVIRUS, FUSION PROTEIN, COMPUTATIONAL STABILIZATION, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,K.GONZALEZ,J.MOUSA,E.STRAUCH REVDAT 4 13-NOV-24 8E15 1 REMARK REVDAT 3 24-JUL-24 8E15 1 JRNL REVDAT 2 25-OCT-23 8E15 1 REMARK REVDAT 1 12-APR-23 8E15 0 JRNL AUTH K.J.GONZALEZ,J.HUANG,M.F.CRIADO,A.BANERJEE,S.M.TOMPKINS, JRNL AUTH 2 J.J.MOUSA,E.M.STRAUCH JRNL TITL A GENERAL COMPUTATIONAL DESIGN STRATEGY FOR STABILIZING JRNL TITL 2 VIRAL CLASS I FUSION PROTEINS. JRNL REF NAT COMMUN V. 15 1335 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38351001 JRNL DOI 10.1038/S41467-024-45480-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.J.GONZALEZ,J.HUANG,M.F.CRIADO,A.BANERJEE,S.TOMPKINS, REMARK 1 AUTH 2 J.J.MOUSA,E.M.STRAUCH REMARK 1 TITL A GENERAL COMPUTATIONAL DESIGN STRATEGY FOR STABILIZING REMARK 1 TITL 2 VIRAL CLASS I FUSION PROTEINS. REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 36993551 REMARK 1 DOI 10.1101/2023.03.16.532924 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6200 - 5.6700 1.00 2780 129 0.1642 0.1977 REMARK 3 2 5.6600 - 4.5000 1.00 2683 153 0.1659 0.1857 REMARK 3 3 4.4900 - 3.9300 1.00 2689 123 0.1701 0.2404 REMARK 3 4 3.9300 - 3.5700 1.00 2654 145 0.2001 0.2584 REMARK 3 5 3.5700 - 3.3100 1.00 2647 135 0.2237 0.2789 REMARK 3 6 3.3100 - 3.1200 1.00 2645 136 0.2548 0.2901 REMARK 3 7 3.1200 - 2.9600 1.00 2627 162 0.2573 0.3028 REMARK 3 8 2.9600 - 2.8300 1.00 2644 130 0.2731 0.3112 REMARK 3 9 2.8300 - 2.7300 1.00 2614 172 0.3079 0.3419 REMARK 3 10 2.7200 - 2.6300 1.00 2615 149 0.3032 0.3569 REMARK 3 11 2.6300 - 2.5500 1.00 2632 147 0.2998 0.3037 REMARK 3 12 2.5500 - 2.4800 1.00 2590 150 0.2849 0.3005 REMARK 3 13 2.4700 - 2.4100 1.00 2649 140 0.3109 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.336 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.647 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3475 REMARK 3 ANGLE : 1.017 4714 REMARK 3 CHIRALITY : 0.057 573 REMARK 3 PLANARITY : 0.008 604 REMARK 3 DIHEDRAL : 16.055 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000264835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 47.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WB0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 2.0 M SODIUM FORMATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 89.09550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 89.09550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 89.09550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 89.09550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 89.09550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 43220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 TRP F 3 REMARK 465 LYS F 4 REMARK 465 VAL F 5 REMARK 465 VAL F 6 REMARK 465 ILE F 7 REMARK 465 ILE F 8 REMARK 465 PHE F 9 REMARK 465 SER F 10 REMARK 465 LEU F 11 REMARK 465 LEU F 12 REMARK 465 ILE F 13 REMARK 465 THR F 14 REMARK 465 PRO F 15 REMARK 465 GLN F 16 REMARK 465 HIS F 17 REMARK 465 GLY F 18 REMARK 465 GLU F 93 REMARK 465 GLN F 94 REMARK 465 ILE F 95 REMARK 465 GLU F 96 REMARK 465 ASN F 97 REMARK 465 PRO F 98 REMARK 465 ARG F 99 REMARK 465 ARG F 100 REMARK 465 ARG F 101 REMARK 465 ARG F 102 REMARK 465 ALA G 472 REMARK 465 LEU G 473 REMARK 465 VAL G 474 REMARK 465 ASP G 475 REMARK 465 GLN G 476 REMARK 465 SER G 477 REMARK 465 ASN G 478 REMARK 465 ARG G 479 REMARK 465 ILE G 480 REMARK 465 LEU G 481 REMARK 465 SER G 482 REMARK 465 SER G 483 REMARK 465 ALA G 484 REMARK 465 GLU G 485 REMARK 465 LYS G 486 REMARK 465 GLY G 487 REMARK 465 ASN G 488 REMARK 465 THR G 489 REMARK 465 GLY G 490 REMARK 465 SER G 491 REMARK 465 GLY G 492 REMARK 465 TYR G 493 REMARK 465 ILE G 494 REMARK 465 PRO G 495 REMARK 465 GLU G 496 REMARK 465 ALA G 497 REMARK 465 PRO G 498 REMARK 465 ARG G 499 REMARK 465 ASP G 500 REMARK 465 GLY G 501 REMARK 465 GLN G 502 REMARK 465 ALA G 503 REMARK 465 TYR G 504 REMARK 465 VAL G 505 REMARK 465 ARG G 506 REMARK 465 LYS G 507 REMARK 465 ASP G 508 REMARK 465 GLY G 509 REMARK 465 GLU G 510 REMARK 465 TRP G 511 REMARK 465 VAL G 512 REMARK 465 LEU G 513 REMARK 465 LEU G 514 REMARK 465 SER G 515 REMARK 465 THR G 516 REMARK 465 PHE G 517 REMARK 465 LEU G 518 REMARK 465 HIS G 519 REMARK 465 HIS G 520 REMARK 465 HIS G 521 REMARK 465 HIS G 522 REMARK 465 HIS G 523 REMARK 465 HIS G 524 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU G 131 CG CD OE1 OE2 REMARK 470 LYS G 143 CG CD CE NZ REMARK 470 LYS G 181 CG CD CE NZ REMARK 470 LYS G 324 CG CD CE NZ REMARK 470 LYS G 386 CG CD CE NZ REMARK 470 LYS G 438 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN G 233 O HOH G 701 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER F 27 11.72 -142.39 REMARK 500 ASP F 62 34.77 -97.97 REMARK 500 ASN G 172 -53.68 -124.77 REMARK 500 ILE G 352 -61.07 -122.39 REMARK 500 LYS G 401 141.51 -174.34 REMARK 500 ASP G 421 -113.10 55.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8E15 F 1 102 UNP Q8B9P0 Q8B9P0_9MONO 1 102 DBREF 8E15 G 103 490 UNP Q8B9P0 Q8B9P0_9MONO 103 490 DBREF 8E15 G 492 518 UNP Q76VI8 Q76VI8_BPT2 458 484 SEQADV 8E15 ASN F 90 UNP Q8B9P0 ALA 90 ENGINEERED MUTATION SEQADV 8E15 ARG F 100 UNP Q8B9P0 GLN 100 ENGINEERED MUTATION SEQADV 8E15 ARG F 101 UNP Q8B9P0 SER 101 ENGINEERED MUTATION SEQADV 8E15 GLU G 114 UNP Q8B9P0 THR 114 ENGINEERED MUTATION SEQADV 8E15 ASP G 130 UNP Q8B9P0 LEU 130 ENGINEERED MUTATION SEQADV 8E15 LEU G 159 UNP Q8B9P0 ALA 159 ENGINEERED MUTATION SEQADV 8E15 PRO G 185 UNP Q8B9P0 ALA 185 ENGINEERED MUTATION SEQADV 8E15 ILE G 203 UNP Q8B9P0 VAL 203 ENGINEERED MUTATION SEQADV 8E15 GLN G 430 UNP Q8B9P0 VAL 430 ENGINEERED MUTATION SEQADV 8E15 ASP G 449 UNP Q8B9P0 VAL 449 ENGINEERED MUTATION SEQADV 8E15 SER G 491 UNP Q8B9P0 LINKER SEQADV 8E15 HIS G 519 UNP Q76VI8 EXPRESSION TAG SEQADV 8E15 HIS G 520 UNP Q76VI8 EXPRESSION TAG SEQADV 8E15 HIS G 521 UNP Q76VI8 EXPRESSION TAG SEQADV 8E15 HIS G 522 UNP Q76VI8 EXPRESSION TAG SEQADV 8E15 HIS G 523 UNP Q76VI8 EXPRESSION TAG SEQADV 8E15 HIS G 524 UNP Q76VI8 EXPRESSION TAG SEQRES 1 F 102 MET SER TRP LYS VAL VAL ILE ILE PHE SER LEU LEU ILE SEQRES 2 F 102 THR PRO GLN HIS GLY LEU LYS GLU SER TYR LEU GLU GLU SEQRES 3 F 102 SER CYS SER THR ILE THR GLU GLY TYR LEU SER VAL LEU SEQRES 4 F 102 ARG THR GLY TRP TYR THR ASN VAL PHE THR LEU GLU VAL SEQRES 5 F 102 GLY ASP VAL GLU ASN LEU THR CYS ALA ASP GLY PRO SER SEQRES 6 F 102 LEU ILE LYS THR GLU LEU ASP LEU THR LYS SER ALA LEU SEQRES 7 F 102 ARG GLU LEU ARG THR VAL SER ALA ASP GLN LEU ASN ARG SEQRES 8 F 102 GLU GLU GLN ILE GLU ASN PRO ARG ARG ARG ARG SEQRES 1 G 422 PHE VAL LEU GLY ALA ILE ALA LEU GLY VAL ALA GLU ALA SEQRES 2 G 422 ALA ALA VAL THR ALA GLY VAL ALA ILE ALA LYS THR ILE SEQRES 3 G 422 ARG ASP GLU SER GLU VAL THR ALA ILE LYS ASN ALA LEU SEQRES 4 G 422 LYS LYS THR ASN GLU ALA VAL SER THR LEU GLY ASN GLY SEQRES 5 G 422 VAL ARG VAL LEU LEU THR ALA VAL ARG GLU LEU LYS ASP SEQRES 6 G 422 PHE VAL SER LYS ASN LEU THR ARG ALA ILE ASN LYS ASN SEQRES 7 G 422 LYS CYS ASP ILE PRO ASP LEU LYS MET ALA VAL SER PHE SEQRES 8 G 422 SER GLN PHE ASN ARG ARG PHE LEU ASN ILE VAL ARG GLN SEQRES 9 G 422 PHE SER ASP ASN ALA GLY ILE THR PRO ALA ILE SER LEU SEQRES 10 G 422 ASP LEU MET THR ASP ALA GLU LEU ALA ARG ALA VAL SER SEQRES 11 G 422 ASN MET PRO THR SER ALA GLY GLN ILE LYS LEU MET LEU SEQRES 12 G 422 GLU ASN ARG ALA MET VAL ARG ARG LYS GLY PHE GLY ILE SEQRES 13 G 422 LEU ILE GLY VAL TYR GLY SER SER VAL ILE TYR MET VAL SEQRES 14 G 422 GLN LEU PRO ILE PHE GLY VAL ILE ASP THR PRO CYS TRP SEQRES 15 G 422 ILE VAL LYS ALA ALA PRO SER CYS SER GLU LYS LYS GLY SEQRES 16 G 422 ASN TYR ALA CYS LEU LEU ARG GLU ASP GLN GLY TRP TYR SEQRES 17 G 422 CYS GLN ASN ALA GLY SER THR VAL TYR TYR PRO ASN GLU SEQRES 18 G 422 LYS ASP CYS GLU THR ARG GLY ASP HIS VAL PHE CYS ASP SEQRES 19 G 422 THR ALA ALA GLY ILE ASN VAL ALA GLU GLN SER LYS GLU SEQRES 20 G 422 CYS ASN ILE ASN ILE SER THR THR ASN TYR PRO CYS LYS SEQRES 21 G 422 VAL SER THR GLY ARG HIS PRO ILE SER MET VAL ALA LEU SEQRES 22 G 422 SER PRO LEU GLY ALA LEU VAL ALA CYS TYR LYS GLY VAL SEQRES 23 G 422 SER CYS SER ILE GLY SER ASN ARG VAL GLY ILE ILE LYS SEQRES 24 G 422 GLN LEU ASN LYS GLY CYS SER TYR ILE THR ASN GLN ASP SEQRES 25 G 422 ALA ASP THR VAL THR ILE ASP ASN THR VAL TYR GLN LEU SEQRES 26 G 422 SER LYS GLN GLU GLY GLU GLN HIS VAL ILE LYS GLY ARG SEQRES 27 G 422 PRO VAL SER SER SER PHE ASP PRO ASP LYS PHE PRO GLU SEQRES 28 G 422 ASP GLN PHE ASN VAL ALA LEU ASP GLN VAL PHE GLU SER SEQRES 29 G 422 ILE GLU ASN SER GLN ALA LEU VAL ASP GLN SER ASN ARG SEQRES 30 G 422 ILE LEU SER SER ALA GLU LYS GLY ASN THR GLY SER GLY SEQRES 31 G 422 TYR ILE PRO GLU ALA PRO ARG ASP GLY GLN ALA TYR VAL SEQRES 32 G 422 ARG LYS ASP GLY GLU TRP VAL LEU LEU SER THR PHE LEU SEQRES 33 G 422 HIS HIS HIS HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET NAG F 601 14 HET NAG G 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 6 HOH *11(H2 O) HELIX 1 AA1 SER F 65 THR F 83 1 19 HELIX 2 AA2 VAL G 104 LEU G 110 1 7 HELIX 3 AA3 GLY G 111 ARG G 129 1 19 HELIX 4 AA4 ASP G 130 LEU G 141 1 12 HELIX 5 AA5 ARG G 163 ASN G 172 1 10 HELIX 6 AA6 ASN G 172 ILE G 177 1 6 HELIX 7 AA7 LEU G 187 ASN G 210 1 24 HELIX 8 AA8 THR G 223 ASN G 233 1 11 HELIX 9 AA9 SER G 237 ASN G 247 1 11 HELIX 10 AB1 ASN G 247 GLY G 255 1 9 HELIX 11 AB2 ASN G 322 LYS G 324 5 3 HELIX 12 AB3 ALA G 338 GLY G 340 5 3 HELIX 13 AB4 ALA G 344 ILE G 352 5 9 HELIX 14 AB5 PRO G 441 PHE G 446 5 6 HELIX 15 AB6 ASP G 447 PHE G 451 5 5 HELIX 16 AB7 LEU G 460 GLN G 471 1 12 SHEET 1 AA1 7 CYS G 326 ARG G 329 0 SHEET 2 AA1 7 HIS G 332 ASP G 336 -1 O PHE G 334 N GLU G 327 SHEET 3 AA1 7 SER F 29 ARG F 40 1 N ARG F 40 O CYS G 335 SHEET 4 AA1 7 VAL G 278 ALA G 288 -1 O VAL G 278 N LEU F 39 SHEET 5 AA1 7 GLY G 308 ASN G 313 -1 O GLN G 312 N PRO G 282 SHEET 6 AA1 7 SER G 316 TYR G 320 -1 O TYR G 320 N TRP G 309 SHEET 7 AA1 7 ILE G 341 VAL G 343 -1 O ILE G 341 N TYR G 319 SHEET 1 AA2 5 CYS G 326 ARG G 329 0 SHEET 2 AA2 5 HIS G 332 ASP G 336 -1 O PHE G 334 N GLU G 327 SHEET 3 AA2 5 SER F 29 ARG F 40 1 N ARG F 40 O CYS G 335 SHEET 4 AA2 5 LYS F 20 LEU F 24 -1 N SER F 22 O ILE F 31 SHEET 5 AA2 5 GLU G 433 ILE G 437 1 O ILE G 437 N TYR F 23 SHEET 1 AA3 6 GLU G 146 THR G 150 0 SHEET 2 AA3 6 ARG G 156 VAL G 162 -1 O LEU G 159 N ALA G 147 SHEET 3 AA3 6 TYR F 44 GLU F 51 1 N GLU F 51 O VAL G 162 SHEET 4 AA3 6 SER G 266 LEU G 273 -1 O TYR G 269 N PHE F 48 SHEET 5 AA3 6 PHE G 256 TYR G 263 -1 N TYR G 263 O SER G 266 SHEET 6 AA3 6 ILE G 213 THR G 214 -1 N THR G 214 O GLY G 257 SHEET 1 AA4 4 SER G 291 LYS G 295 0 SHEET 2 AA4 4 ASN G 298 ARG G 304 -1 O LEU G 302 N SER G 291 SHEET 3 AA4 4 LYS G 362 GLY G 366 -1 O GLY G 366 N CYS G 301 SHEET 4 AA4 4 VAL G 458 ALA G 459 -1 O VAL G 458 N VAL G 363 SHEET 1 AA5 3 MET G 372 SER G 376 0 SHEET 2 AA5 3 GLY G 379 CYS G 384 -1 O ALA G 383 N MET G 372 SHEET 3 AA5 3 GLY G 406 THR G 411 -1 O ILE G 410 N ALA G 380 SHEET 1 AA6 4 GLY G 398 GLN G 402 0 SHEET 2 AA6 4 CYS G 390 SER G 394 -1 N ILE G 392 O ILE G 400 SHEET 3 AA6 4 THR G 417 ILE G 420 -1 O THR G 419 N SER G 391 SHEET 4 AA6 4 THR G 423 GLN G 426 -1 O TYR G 425 N VAL G 418 SSBOND 1 CYS F 28 CYS G 407 1555 1555 2.04 SSBOND 2 CYS F 60 CYS G 182 1555 1555 2.04 SSBOND 3 CYS G 283 CYS G 311 1555 1555 2.09 SSBOND 4 CYS G 292 CYS G 301 1555 1555 2.10 SSBOND 5 CYS G 326 CYS G 335 1555 1555 2.10 SSBOND 6 CYS G 350 CYS G 361 1555 1555 2.06 SSBOND 7 CYS G 384 CYS G 390 1555 1555 2.08 LINK ND2 ASN F 57 C1 NAG F 601 1555 1555 1.46 LINK ND2 ASN G 172 C1 NAG G 601 1555 1555 1.44 LINK ND2 ASN G 353 C1 NAG A 1 1555 1555 1.46 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.46 CRYST1 178.191 178.191 178.191 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005612 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005612 0.00000