HEADER VIRAL PROTEIN 12-AUG-22 8E21 TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ001023034 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 18-OCT-23 8E21 1 REMARK REVDAT 2 11-OCT-23 8E21 1 JRNL REVDAT 1 14-SEP-22 8E21 0 JRNL AUTH M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ001023034 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 8302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4400 - 3.7600 0.86 2538 115 0.1874 0.2356 REMARK 3 2 3.7600 - 2.9900 0.96 2690 131 0.2676 0.3199 REMARK 3 3 2.7300 - 2.6100 0.98 2684 144 0.3272 0.4066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.332 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.994 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1542 REMARK 3 ANGLE : 0.639 2083 REMARK 3 CHIRALITY : 0.042 218 REMARK 3 PLANARITY : 0.005 262 REMARK 3 DIHEDRAL : 8.354 225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4694 23.6266 3.5711 REMARK 3 T TENSOR REMARK 3 T11: 0.7628 T22: 0.7348 REMARK 3 T33: 0.8662 T12: -0.1223 REMARK 3 T13: 0.2718 T23: -0.1072 REMARK 3 L TENSOR REMARK 3 L11: 5.1336 L22: 5.5799 REMARK 3 L33: 8.0028 L12: 2.9305 REMARK 3 L13: 4.8635 L23: 1.1883 REMARK 3 S TENSOR REMARK 3 S11: 0.8898 S12: 1.6261 S13: 0.7278 REMARK 3 S21: 0.7320 S22: -0.6479 S23: 0.4002 REMARK 3 S31: 0.7748 S32: -0.1708 S33: -0.0441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1722 17.5830 4.4498 REMARK 3 T TENSOR REMARK 3 T11: 1.0311 T22: 0.7306 REMARK 3 T33: 0.7042 T12: -0.0595 REMARK 3 T13: 0.3350 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.9801 L22: 6.7263 REMARK 3 L33: 5.4151 L12: -3.6871 REMARK 3 L13: 1.4335 L23: 1.8723 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: 0.1350 S13: -0.8948 REMARK 3 S21: 0.6607 S22: -0.4115 S23: 0.0203 REMARK 3 S31: 1.6313 S32: 0.7018 S33: 0.6435 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2191 23.2891 14.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.6252 T22: 0.5621 REMARK 3 T33: 0.7789 T12: -0.1334 REMARK 3 T13: 0.3219 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.9457 L22: 3.4407 REMARK 3 L33: 6.5332 L12: 0.9659 REMARK 3 L13: 3.3324 L23: 2.7044 REMARK 3 S TENSOR REMARK 3 S11: -0.2069 S12: -0.0751 S13: -0.0703 REMARK 3 S21: 1.1338 S22: -0.1877 S23: 0.6014 REMARK 3 S31: 0.2429 S32: 0.5934 S33: 0.3280 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1915 28.4107 19.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.7846 T22: 0.8976 REMARK 3 T33: 0.9100 T12: -0.0854 REMARK 3 T13: 0.2325 T23: 0.2229 REMARK 3 L TENSOR REMARK 3 L11: 4.5807 L22: 1.6849 REMARK 3 L33: 4.2589 L12: -2.5959 REMARK 3 L13: -0.9046 L23: -0.3464 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: -0.3932 S13: 0.5703 REMARK 3 S21: -0.1293 S22: -0.0089 S23: -1.0507 REMARK 3 S31: -0.0335 S32: 0.6329 S33: -0.2233 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5434 19.2103 19.0271 REMARK 3 T TENSOR REMARK 3 T11: 0.9757 T22: 0.9704 REMARK 3 T33: 0.7255 T12: 0.2033 REMARK 3 T13: 0.1793 T23: 0.3246 REMARK 3 L TENSOR REMARK 3 L11: 7.4151 L22: 3.6143 REMARK 3 L33: 9.0495 L12: 3.2025 REMARK 3 L13: 5.5377 L23: 3.6652 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: -0.2065 S13: -0.9123 REMARK 3 S21: 1.0156 S22: 0.0550 S23: -1.6700 REMARK 3 S31: 0.4391 S32: 2.0959 S33: 0.4099 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5864 14.9910 23.4553 REMARK 3 T TENSOR REMARK 3 T11: 1.1587 T22: 0.9762 REMARK 3 T33: 0.8896 T12: -0.1229 REMARK 3 T13: 0.2375 T23: 0.4493 REMARK 3 L TENSOR REMARK 3 L11: 8.4040 L22: 3.9257 REMARK 3 L33: 5.8209 L12: -3.4050 REMARK 3 L13: 1.9135 L23: 2.9240 REMARK 3 S TENSOR REMARK 3 S11: 0.5075 S12: -1.0250 S13: -1.6942 REMARK 3 S21: 2.1911 S22: -0.0987 S23: 0.6598 REMARK 3 S31: -1.1828 S32: -1.0332 S33: -0.4013 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9962 26.6724 28.4441 REMARK 3 T TENSOR REMARK 3 T11: 0.9009 T22: 0.9870 REMARK 3 T33: 0.7021 T12: -0.0545 REMARK 3 T13: 0.3095 T23: 0.2513 REMARK 3 L TENSOR REMARK 3 L11: 1.9996 L22: 7.8872 REMARK 3 L33: 1.6495 L12: -9.3967 REMARK 3 L13: -4.3003 L23: 3.6115 REMARK 3 S TENSOR REMARK 3 S11: -1.2678 S12: -3.0312 S13: 0.1672 REMARK 3 S21: 0.7199 S22: 0.0890 S23: -0.8883 REMARK 3 S31: 0.7853 S32: 0.7850 S33: -0.0136 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2209 18.0334 23.7122 REMARK 3 T TENSOR REMARK 3 T11: 0.7971 T22: 0.8398 REMARK 3 T33: 0.8636 T12: -0.1706 REMARK 3 T13: 0.4616 T23: 0.1583 REMARK 3 L TENSOR REMARK 3 L11: 6.5239 L22: 3.8850 REMARK 3 L33: 3.3657 L12: -3.4974 REMARK 3 L13: 2.1411 L23: -1.8651 REMARK 3 S TENSOR REMARK 3 S11: 0.5171 S12: -0.3427 S13: -2.0851 REMARK 3 S21: 0.2867 S22: -0.6153 S23: -0.6159 REMARK 3 S31: 1.1198 S32: 0.0542 S33: 0.1339 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1110 11.2141 27.4606 REMARK 3 T TENSOR REMARK 3 T11: 1.8226 T22: 1.0080 REMARK 3 T33: 0.8248 T12: -0.0571 REMARK 3 T13: 0.1952 T23: 0.2997 REMARK 3 L TENSOR REMARK 3 L11: 2.1636 L22: 5.7980 REMARK 3 L33: 5.4609 L12: 3.4423 REMARK 3 L13: 0.7147 L23: 0.8929 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: -0.0269 S13: 0.3692 REMARK 3 S21: 1.3991 S22: 0.3528 S23: 0.7633 REMARK 3 S31: 1.7586 S32: -0.3289 S33: -0.1336 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4614 17.3961 28.5413 REMARK 3 T TENSOR REMARK 3 T11: 1.0408 T22: 0.8615 REMARK 3 T33: 0.6683 T12: -0.2399 REMARK 3 T13: 0.5051 T23: 0.4690 REMARK 3 L TENSOR REMARK 3 L11: 8.0918 L22: 4.7579 REMARK 3 L33: 7.5820 L12: 2.6217 REMARK 3 L13: 3.9492 L23: 1.5900 REMARK 3 S TENSOR REMARK 3 S11: 1.3709 S12: -1.7165 S13: -0.2598 REMARK 3 S21: 0.6407 S22: -0.8693 S23: -0.8603 REMARK 3 S31: 0.6144 S32: 0.8403 S33: 0.5292 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1486 23.2294 30.4089 REMARK 3 T TENSOR REMARK 3 T11: 1.3119 T22: 0.9613 REMARK 3 T33: 0.7714 T12: -0.1583 REMARK 3 T13: 0.3446 T23: 0.1049 REMARK 3 L TENSOR REMARK 3 L11: 3.6913 L22: 1.8113 REMARK 3 L33: 7.4529 L12: -1.5722 REMARK 3 L13: 3.7797 L23: 0.4205 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: -0.9708 S13: -0.9552 REMARK 3 S21: 0.3133 S22: 0.3023 S23: 0.7220 REMARK 3 S31: 0.4810 S32: -0.2803 S33: 0.1402 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7451 28.3425 19.1889 REMARK 3 T TENSOR REMARK 3 T11: 0.6662 T22: 0.6706 REMARK 3 T33: 0.7636 T12: -0.1863 REMARK 3 T13: 0.3600 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 9.0857 L22: 2.9615 REMARK 3 L33: 9.5899 L12: -1.8920 REMARK 3 L13: 5.0215 L23: 0.5748 REMARK 3 S TENSOR REMARK 3 S11: -0.6178 S12: 0.6367 S13: 0.5008 REMARK 3 S21: -0.1260 S22: -0.0031 S23: 0.5507 REMARK 3 S31: -0.4301 S32: -0.6847 S33: 0.5119 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2173 16.1338 12.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.8587 T22: 0.9077 REMARK 3 T33: 0.9788 T12: -0.4107 REMARK 3 T13: 0.3626 T23: -0.2168 REMARK 3 L TENSOR REMARK 3 L11: 9.1360 L22: 2.2968 REMARK 3 L33: 6.0502 L12: -2.8111 REMARK 3 L13: 7.2125 L23: -1.5078 REMARK 3 S TENSOR REMARK 3 S11: 1.0794 S12: -1.5690 S13: -1.1049 REMARK 3 S21: 0.4359 S22: -0.4794 S23: 1.2381 REMARK 3 S31: 1.4124 S32: -2.0438 S33: 0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 75.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.26150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.49150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.26150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.49150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.26150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.49150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.26150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.49150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.26150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.49150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.26150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.49150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.26150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.49150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.26150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.26150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.49150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 102 CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 172 NZ REMARK 470 GLN A 193 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -147.31 -104.01 REMARK 500 LYS A 139 -48.03 61.78 REMARK 500 SER A 140 83.22 -57.00 REMARK 500 GLU A 141 1.38 -65.11 REMARK 500 THR A 162 -70.24 61.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 107.1 REMARK 620 3 GLU A 119 OE2 166.7 85.1 REMARK 620 4 ILE A 120 O 100.7 88.6 84.7 REMARK 620 5 U9U A 203 O01 78.9 168.1 90.2 80.1 REMARK 620 6 U9U A 203 O30 96.1 105.7 75.0 153.8 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 95.6 REMARK 620 3 U9U A 203 O28 94.4 134.5 REMARK 620 4 HOH A 301 O 126.5 137.8 55.1 REMARK 620 5 HOH A 302 O 163.1 85.9 73.0 55.4 REMARK 620 N 1 2 3 4 DBREF 8E21 A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 8E21 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 8E21 MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 8E21 GLY A 51 UNP C6H0Y9 LINKER SEQADV 8E21 GLY A 52 UNP C6H0Y9 LINKER SEQADV 8E21 SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET U9U A 203 30 HET QQ4 A 204 41 HET SO4 A 205 5 HETNAM MN MANGANESE (II) ION HETNAM U9U 5-HYDROXY-6-OXO-N-[2-(PYRIDIN-4-YL)ETHYL]-2-{[2- HETNAM 2 U9U (TRIFLUOROMETHYL)PHENYL]METHYL}-3,6-DIHYDROPYRIMIDINE- HETNAM 3 U9U 4-CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 U9U C20 H17 F3 N4 O3 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.27 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.31 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.19 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.19 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.45 LINK O ILE A 120 MN MN A 201 1555 1555 2.01 LINK MN MN A 201 O01 U9U A 203 1555 1555 2.26 LINK MN MN A 201 O30 U9U A 203 1555 1555 1.95 LINK MN MN A 202 O28 U9U A 203 1555 1555 2.14 LINK MN MN A 202 O HOH A 301 1555 1555 2.73 LINK MN MN A 202 O HOH A 302 1555 1555 2.11 CRYST1 90.523 90.523 134.983 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007408 0.00000