data_8E54 # _entry.id 8E54 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8E54 pdb_00008e54 10.2210/pdb8e54/pdb WWPDB D_1000267834 ? ? EMDB EMD-27902 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'MicroED structure of triclinic lysozyme recorded on K3' _pdbx_database_related.db_id EMD-27902 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8E54 _pdbx_database_status.recvd_initial_deposition_date 2022-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Clabbers, M.T.B.' 1 0000-0002-5466-6508 'Martynowycz, M.W.' 2 0000-0003-0055-230X 'Hattne, J.' 3 0000-0002-8936-0912 'Nannenga, B.L.' 4 0000-0001-6859-3429 'Gonen, T.' 5 0000-0002-9254-4069 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Struct.Biol. _citation.journal_id_ASTM JSBIEM _citation.journal_id_CSD 0803 _citation.journal_id_ISSN 1095-8657 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 214 _citation.language ? _citation.page_first 107886 _citation.page_last 107886 _citation.title 'Electron-counting MicroED data with the K2 and K3 direct electron detectors.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jsb.2022.107886 _citation.pdbx_database_id_PubMed 36044956 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clabbers, M.T.B.' 1 ? primary 'Martynowycz, M.W.' 2 ? primary 'Hattne, J.' 3 ? primary 'Nannenga, B.L.' 4 ? primary 'Gonen, T.' 5 ? # _cell.angle_alpha 87.851 _cell.angle_alpha_esd ? _cell.angle_beta 108.849 _cell.angle_beta_esd ? _cell.angle_gamma 112.600 _cell.angle_gamma_esd ? _cell.entry_id 8E54 _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.380 _cell.length_a_esd ? _cell.length_b 30.760 _cell.length_b_esd ? _cell.length_c 33.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8E54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 16257.660 1 3.2.1.17 ? ? ? 2 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 3 water nat water 18.015 118 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C,Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id AAA _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 SER n 1 4 LEU n 1 5 LEU n 1 6 ILE n 1 7 LEU n 1 8 VAL n 1 9 LEU n 1 10 CYS n 1 11 PHE n 1 12 LEU n 1 13 PRO n 1 14 LEU n 1 15 ALA n 1 16 ALA n 1 17 LEU n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 PHE n 1 22 GLY n 1 23 ARG n 1 24 CYS n 1 25 GLU n 1 26 LEU n 1 27 ALA n 1 28 ALA n 1 29 ALA n 1 30 MET n 1 31 LYS n 1 32 ARG n 1 33 HIS n 1 34 GLY n 1 35 LEU n 1 36 ASP n 1 37 ASN n 1 38 TYR n 1 39 ARG n 1 40 GLY n 1 41 TYR n 1 42 SER n 1 43 LEU n 1 44 GLY n 1 45 ASN n 1 46 TRP n 1 47 VAL n 1 48 CYS n 1 49 ALA n 1 50 ALA n 1 51 LYS n 1 52 PHE n 1 53 GLU n 1 54 SER n 1 55 ASN n 1 56 PHE n 1 57 ASN n 1 58 THR n 1 59 GLN n 1 60 ALA n 1 61 THR n 1 62 ASN n 1 63 ARG n 1 64 ASN n 1 65 THR n 1 66 ASP n 1 67 GLY n 1 68 SER n 1 69 THR n 1 70 ASP n 1 71 TYR n 1 72 GLY n 1 73 ILE n 1 74 LEU n 1 75 GLN n 1 76 ILE n 1 77 ASN n 1 78 SER n 1 79 ARG n 1 80 TRP n 1 81 TRP n 1 82 CYS n 1 83 ASN n 1 84 ASP n 1 85 GLY n 1 86 ARG n 1 87 THR n 1 88 PRO n 1 89 GLY n 1 90 SER n 1 91 ARG n 1 92 ASN n 1 93 LEU n 1 94 CYS n 1 95 ASN n 1 96 ILE n 1 97 PRO n 1 98 CYS n 1 99 SER n 1 100 ALA n 1 101 LEU n 1 102 LEU n 1 103 SER n 1 104 SER n 1 105 ASP n 1 106 ILE n 1 107 THR n 1 108 ALA n 1 109 SER n 1 110 VAL n 1 111 ASN n 1 112 CYS n 1 113 ALA n 1 114 LYS n 1 115 LYS n 1 116 ILE n 1 117 VAL n 1 118 SER n 1 119 ASP n 1 120 GLY n 1 121 ASN n 1 122 GLY n 1 123 MET n 1 124 ASN n 1 125 ALA n 1 126 TRP n 1 127 VAL n 1 128 ALA n 1 129 TRP n 1 130 ARG n 1 131 ASN n 1 132 ARG n 1 133 CYS n 1 134 LYS n 1 135 GLY n 1 136 THR n 1 137 ASP n 1 138 VAL n 1 139 GLN n 1 140 ALA n 1 141 TRP n 1 142 ILE n 1 143 ARG n 1 144 GLY n 1 145 CYS n 1 146 ARG n 1 147 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 147 _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8E54 _struct_ref_seq.pdbx_strand_id AAA _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -17 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8E54 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] 0.599 _refine.aniso_B[1][2] 0.678 _refine.aniso_B[1][3] -0.569 _refine.aniso_B[2][2] 1.349 _refine.aniso_B[2][3] 0.580 _refine.aniso_B[3][3] -2.225 _refine.B_iso_max ? _refine.B_iso_mean 12.937 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8E54 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.200 _refine.ls_d_res_low 31.076 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24512 _refine.ls_number_reflns_R_free 1186 _refine.ls_number_reflns_R_work 23326 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.839 _refine.ls_percent_reflns_R_free 4.838 _refine.ls_R_factor_all 0.184 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2420 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1813 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.068 _refine.pdbx_overall_ESU_R_Free 0.068 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.756 _refine.overall_SU_ML 0.069 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.021 0.013 1028 ? r_bond_refined_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.000 0.014 938 ? r_bond_other_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.142 1.634 1392 ? r_angle_refined_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.929 1.595 2136 ? r_angle_other_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 7.312 5.000 128 ? r_dihedral_angle_1_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 32.985 20.656 61 ? r_dihedral_angle_2_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 13.025 15.000 166 ? r_dihedral_angle_3_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 16.562 15.000 11 ? r_dihedral_angle_4_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.092 0.200 130 ? r_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.012 0.020 1214 ? r_gen_planes_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.002 0.020 280 ? r_gen_planes_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.242 0.200 386 ? r_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.222 0.200 1258 ? r_symmetry_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.212 0.200 587 ? r_nbtor_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.094 0.200 643 ? r_symmetry_nbtor_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.285 0.200 147 ? r_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.247 0.200 30 ? r_symmetry_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.221 0.200 84 ? r_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.150 0.200 25 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.809 1.107 515 ? r_mcbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.729 1.102 514 ? r_mcbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.086 1.669 642 ? r_mcangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.109 1.676 643 ? r_mcangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.203 1.406 513 ? r_scbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.145 1.403 510 ? r_scbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.528 2.004 750 ? r_scangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.449 1.999 747 ? r_scangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.914 22.673 5206 ? r_lrange_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.630 22.164 5090 ? r_lrange_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.782 3.000 1966 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.200 1.231 2090 . 76 1682 84.1148 . 0.323 . 0.355 . 0.321 . . . . . 0.319 . 20 . 0.796 0.772 'ELECTRON CRYSTALLOGRAPHY' 1.231 1.265 2026 . 75 1678 86.5252 . 0.294 . 0.328 . 0.293 . . . . . 0.290 . 20 . 0.831 0.786 'ELECTRON CRYSTALLOGRAPHY' 1.265 1.301 1987 . 93 1624 86.4117 . 0.287 . 0.346 . 0.284 . . . . . 0.281 . 20 . 0.850 0.800 'ELECTRON CRYSTALLOGRAPHY' 1.301 1.341 1936 . 85 1626 88.3781 . 0.266 . 0.290 . 0.265 . . . . . 0.258 . 20 . 0.864 0.807 'ELECTRON CRYSTALLOGRAPHY' 1.341 1.385 1860 . 80 1566 88.4946 . 0.279 . 0.352 . 0.275 . . . . . 0.269 . 20 . 0.848 0.789 'ELECTRON CRYSTALLOGRAPHY' 1.385 1.434 1772 . 68 1497 88.3183 . 0.275 . 0.339 . 0.273 . . . . . 0.266 . 20 . 0.808 0.765 'ELECTRON CRYSTALLOGRAPHY' 1.434 1.488 1735 . 82 1450 88.2997 . 0.250 . 0.298 . 0.247 . . . . . 0.239 . 20 . 0.834 0.795 'ELECTRON CRYSTALLOGRAPHY' 1.488 1.548 1687 . 71 1427 88.7967 . 0.210 . 0.269 . 0.207 . . . . . 0.195 . 20 . 0.909 0.876 'ELECTRON CRYSTALLOGRAPHY' 1.548 1.617 1594 . 71 1333 88.0803 . 0.187 . 0.242 . 0.184 . . . . . 0.171 . 20 . 0.933 0.907 'ELECTRON CRYSTALLOGRAPHY' 1.617 1.696 1544 . 63 1306 88.6658 . 0.182 . 0.229 . 0.180 . . . . . 0.166 . 20 . 0.928 0.917 'ELECTRON CRYSTALLOGRAPHY' 1.696 1.787 1440 . 66 1198 87.7778 . 0.192 . 0.255 . 0.188 . . . . . 0.175 . 20 . 0.921 0.909 'ELECTRON CRYSTALLOGRAPHY' 1.787 1.895 1391 . 64 1162 88.1380 . 0.181 . 0.258 . 0.176 . . . . . 0.166 . 20 . 0.924 0.924 'ELECTRON CRYSTALLOGRAPHY' 1.895 2.025 1307 . 44 1087 86.5340 . 0.146 . 0.206 . 0.144 . . . . . 0.136 . 20 . 0.953 0.943 'ELECTRON CRYSTALLOGRAPHY' 2.025 2.187 1212 . 57 989 86.3036 . 0.146 . 0.257 . 0.140 . . . . . 0.138 . 20 . 0.956 0.931 'ELECTRON CRYSTALLOGRAPHY' 2.187 2.394 1098 . 41 883 84.1530 . 0.148 . 0.227 . 0.144 . . . . . 0.145 . 20 . 0.954 0.950 'ELECTRON CRYSTALLOGRAPHY' 2.394 2.675 1001 . 41 809 84.9151 . 0.144 . 0.174 . 0.142 . . . . . 0.143 . 20 . 0.959 0.948 'ELECTRON CRYSTALLOGRAPHY' 2.675 3.085 883 . 42 707 84.8245 . 0.147 . 0.205 . 0.143 . . . . . 0.151 . 20 . 0.959 0.946 'ELECTRON CRYSTALLOGRAPHY' 3.085 3.769 755 . 36 602 84.5033 . 0.139 . 0.156 . 0.138 . . . . . 0.155 . 20 . 0.963 0.960 'ELECTRON CRYSTALLOGRAPHY' 3.769 5.292 587 . 17 480 84.6678 . 0.136 . 0.213 . 0.132 . . . . . 0.150 . 20 . 0.961 0.951 'ELECTRON CRYSTALLOGRAPHY' 5.292 31.076 321 . 14 219 72.5857 . 0.200 . 0.262 . 0.196 . . . . . 0.221 . 20 . 0.908 0.858 # _struct.entry_id 8E54 _struct.title 'MicroED structure of triclinic lysozyme recorded on K3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8E54 _struct_keywords.text Hydrolase _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 22 ? HIS A 33 ? GLY AAA 4 HIS AAA 15 1 ? 12 HELX_P HELX_P2 AA2 ASN A 37 ? TYR A 41 ? ASN AAA 19 TYR AAA 23 5 ? 5 HELX_P HELX_P3 AA3 SER A 42 ? ASN A 55 ? SER AAA 24 ASN AAA 37 1 ? 14 HELX_P HELX_P4 AA4 PRO A 97 ? SER A 103 ? PRO AAA 79 SER AAA 85 5 ? 7 HELX_P HELX_P5 AA5 ILE A 106 ? ASP A 119 ? ILE AAA 88 ASP AAA 101 1 ? 14 HELX_P HELX_P6 AA6 GLY A 122 ? ALA A 125 ? GLY AAA 104 ALA AAA 107 5 ? 4 HELX_P HELX_P7 AA7 TRP A 126 ? CYS A 133 ? TRP AAA 108 CYS AAA 115 1 ? 8 HELX_P HELX_P8 AA8 ASP A 137 ? ILE A 142 ? ASP AAA 119 ILE AAA 124 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 145 SG ? ? AAA CYS 6 AAA CYS 127 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 133 SG ? ? AAA CYS 30 AAA CYS 115 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf3 disulf ? ? A CYS 82 SG ? ? ? 1_555 A CYS 98 SG ? ? AAA CYS 64 AAA CYS 80 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 112 SG ? ? AAA CYS 76 AAA CYS 94 1_555 ? ? ? ? ? ? ? 1.975 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 61 ? ARG A 63 ? THR AAA 43 ARG AAA 45 AA1 2 THR A 69 ? TYR A 71 ? THR AAA 51 TYR AAA 53 AA1 3 ILE A 76 ? ASN A 77 ? ILE AAA 58 ASN AAA 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 62 ? N ASN AAA 44 O ASP A 70 ? O ASP AAA 52 AA1 2 3 N TYR A 71 ? N TYR AAA 53 O ILE A 76 ? O ILE AAA 58 # _atom_sites.entry_id 8E54 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.037908 _atom_sites.fract_transf_matrix[1][2] 0.015779 _atom_sites.fract_transf_matrix[1][3] 0.014578 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035214 _atom_sites.fract_transf_matrix[2][3] 0.003510 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032179 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -17 ? ? ? AAA . n A 1 2 ARG 2 -16 ? ? ? AAA . n A 1 3 SER 3 -15 ? ? ? AAA . n A 1 4 LEU 4 -14 ? ? ? AAA . n A 1 5 LEU 5 -13 ? ? ? AAA . n A 1 6 ILE 6 -12 ? ? ? AAA . n A 1 7 LEU 7 -11 ? ? ? AAA . n A 1 8 VAL 8 -10 ? ? ? AAA . n A 1 9 LEU 9 -9 ? ? ? AAA . n A 1 10 CYS 10 -8 ? ? ? AAA . n A 1 11 PHE 11 -7 ? ? ? AAA . n A 1 12 LEU 12 -6 ? ? ? AAA . n A 1 13 PRO 13 -5 ? ? ? AAA . n A 1 14 LEU 14 -4 ? ? ? AAA . n A 1 15 ALA 15 -3 ? ? ? AAA . n A 1 16 ALA 16 -2 ? ? ? AAA . n A 1 17 LEU 17 -1 ? ? ? AAA . n A 1 18 GLY 18 0 ? ? ? AAA . n A 1 19 LYS 19 1 1 LYS LYS AAA . n A 1 20 VAL 20 2 2 VAL VAL AAA . n A 1 21 PHE 21 3 3 PHE PHE AAA . n A 1 22 GLY 22 4 4 GLY GLY AAA . n A 1 23 ARG 23 5 5 ARG ARG AAA . n A 1 24 CYS 24 6 6 CYS CYS AAA . n A 1 25 GLU 25 7 7 GLU GLU AAA . n A 1 26 LEU 26 8 8 LEU LEU AAA . n A 1 27 ALA 27 9 9 ALA ALA AAA . n A 1 28 ALA 28 10 10 ALA ALA AAA . n A 1 29 ALA 29 11 11 ALA ALA AAA . n A 1 30 MET 30 12 12 MET MET AAA . n A 1 31 LYS 31 13 13 LYS LYS AAA . n A 1 32 ARG 32 14 14 ARG ARG AAA . n A 1 33 HIS 33 15 15 HIS HIS AAA . n A 1 34 GLY 34 16 16 GLY GLY AAA . n A 1 35 LEU 35 17 17 LEU LEU AAA . n A 1 36 ASP 36 18 18 ASP ASP AAA . n A 1 37 ASN 37 19 19 ASN ASN AAA . n A 1 38 TYR 38 20 20 TYR TYR AAA . n A 1 39 ARG 39 21 21 ARG ARG AAA . n A 1 40 GLY 40 22 22 GLY GLY AAA . n A 1 41 TYR 41 23 23 TYR TYR AAA . n A 1 42 SER 42 24 24 SER SER AAA . n A 1 43 LEU 43 25 25 LEU LEU AAA . n A 1 44 GLY 44 26 26 GLY GLY AAA . n A 1 45 ASN 45 27 27 ASN ASN AAA . n A 1 46 TRP 46 28 28 TRP TRP AAA . n A 1 47 VAL 47 29 29 VAL VAL AAA . n A 1 48 CYS 48 30 30 CYS CYS AAA . n A 1 49 ALA 49 31 31 ALA ALA AAA . n A 1 50 ALA 50 32 32 ALA ALA AAA . n A 1 51 LYS 51 33 33 LYS LYS AAA . n A 1 52 PHE 52 34 34 PHE PHE AAA . n A 1 53 GLU 53 35 35 GLU GLU AAA . n A 1 54 SER 54 36 36 SER SER AAA . n A 1 55 ASN 55 37 37 ASN ASN AAA . n A 1 56 PHE 56 38 38 PHE PHE AAA . n A 1 57 ASN 57 39 39 ASN ASN AAA . n A 1 58 THR 58 40 40 THR THR AAA . n A 1 59 GLN 59 41 41 GLN GLN AAA . n A 1 60 ALA 60 42 42 ALA ALA AAA . n A 1 61 THR 61 43 43 THR THR AAA . n A 1 62 ASN 62 44 44 ASN ASN AAA . n A 1 63 ARG 63 45 45 ARG ARG AAA . n A 1 64 ASN 64 46 46 ASN ASN AAA . n A 1 65 THR 65 47 47 THR THR AAA . n A 1 66 ASP 66 48 48 ASP ASP AAA . n A 1 67 GLY 67 49 49 GLY GLY AAA . n A 1 68 SER 68 50 50 SER SER AAA . n A 1 69 THR 69 51 51 THR THR AAA . n A 1 70 ASP 70 52 52 ASP ASP AAA . n A 1 71 TYR 71 53 53 TYR TYR AAA . n A 1 72 GLY 72 54 54 GLY GLY AAA . n A 1 73 ILE 73 55 55 ILE ILE AAA . n A 1 74 LEU 74 56 56 LEU LEU AAA . n A 1 75 GLN 75 57 57 GLN GLN AAA . n A 1 76 ILE 76 58 58 ILE ILE AAA . n A 1 77 ASN 77 59 59 ASN ASN AAA . n A 1 78 SER 78 60 60 SER SER AAA . n A 1 79 ARG 79 61 61 ARG ARG AAA . n A 1 80 TRP 80 62 62 TRP TRP AAA . n A 1 81 TRP 81 63 63 TRP TRP AAA . n A 1 82 CYS 82 64 64 CYS CYS AAA . n A 1 83 ASN 83 65 65 ASN ASN AAA . n A 1 84 ASP 84 66 66 ASP ASP AAA . n A 1 85 GLY 85 67 67 GLY GLY AAA . n A 1 86 ARG 86 68 68 ARG ARG AAA . n A 1 87 THR 87 69 69 THR THR AAA . n A 1 88 PRO 88 70 70 PRO PRO AAA . n A 1 89 GLY 89 71 71 GLY GLY AAA . n A 1 90 SER 90 72 72 SER SER AAA . n A 1 91 ARG 91 73 73 ARG ARG AAA . n A 1 92 ASN 92 74 74 ASN ASN AAA . n A 1 93 LEU 93 75 75 LEU LEU AAA . n A 1 94 CYS 94 76 76 CYS CYS AAA . n A 1 95 ASN 95 77 77 ASN ASN AAA . n A 1 96 ILE 96 78 78 ILE ILE AAA . n A 1 97 PRO 97 79 79 PRO PRO AAA . n A 1 98 CYS 98 80 80 CYS CYS AAA . n A 1 99 SER 99 81 81 SER SER AAA . n A 1 100 ALA 100 82 82 ALA ALA AAA . n A 1 101 LEU 101 83 83 LEU LEU AAA . n A 1 102 LEU 102 84 84 LEU LEU AAA . n A 1 103 SER 103 85 85 SER SER AAA . n A 1 104 SER 104 86 86 SER SER AAA . n A 1 105 ASP 105 87 87 ASP ASP AAA . n A 1 106 ILE 106 88 88 ILE ILE AAA . n A 1 107 THR 107 89 89 THR THR AAA . n A 1 108 ALA 108 90 90 ALA ALA AAA . n A 1 109 SER 109 91 91 SER SER AAA . n A 1 110 VAL 110 92 92 VAL VAL AAA . n A 1 111 ASN 111 93 93 ASN ASN AAA . n A 1 112 CYS 112 94 94 CYS CYS AAA . n A 1 113 ALA 113 95 95 ALA ALA AAA . n A 1 114 LYS 114 96 96 LYS LYS AAA . n A 1 115 LYS 115 97 97 LYS LYS AAA . n A 1 116 ILE 116 98 98 ILE ILE AAA . n A 1 117 VAL 117 99 99 VAL VAL AAA . n A 1 118 SER 118 100 100 SER SER AAA . n A 1 119 ASP 119 101 101 ASP ASP AAA . n A 1 120 GLY 120 102 102 GLY GLY AAA . n A 1 121 ASN 121 103 103 ASN ASN AAA . n A 1 122 GLY 122 104 104 GLY GLY AAA . n A 1 123 MET 123 105 105 MET MET AAA . n A 1 124 ASN 124 106 106 ASN ASN AAA . n A 1 125 ALA 125 107 107 ALA ALA AAA . n A 1 126 TRP 126 108 108 TRP TRP AAA . n A 1 127 VAL 127 109 109 VAL VAL AAA . n A 1 128 ALA 128 110 110 ALA ALA AAA . n A 1 129 TRP 129 111 111 TRP TRP AAA . n A 1 130 ARG 130 112 112 ARG ARG AAA . n A 1 131 ASN 131 113 113 ASN ASN AAA . n A 1 132 ARG 132 114 114 ARG ARG AAA . n A 1 133 CYS 133 115 115 CYS CYS AAA . n A 1 134 LYS 134 116 116 LYS LYS AAA . n A 1 135 GLY 135 117 117 GLY GLY AAA . n A 1 136 THR 136 118 118 THR THR AAA . n A 1 137 ASP 137 119 119 ASP ASP AAA . n A 1 138 VAL 138 120 120 VAL VAL AAA . n A 1 139 GLN 139 121 121 GLN GLN AAA . n A 1 140 ALA 140 122 122 ALA ALA AAA . n A 1 141 TRP 141 123 123 TRP TRP AAA . n A 1 142 ILE 142 124 124 ILE ILE AAA . n A 1 143 ARG 143 125 125 ARG ARG AAA . n A 1 144 GLY 144 126 126 GLY GLY AAA . n A 1 145 CYS 145 127 127 CYS CYS AAA . n A 1 146 ARG 146 128 128 ARG ARG AAA . n A 1 147 LEU 147 129 129 LEU LEU AAA . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email tgonen@g.ucla.edu _pdbx_contact_author.name_first Tamir _pdbx_contact_author.name_last Gonen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9254-4069 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 1 201 201 NO3 NO3 AAA . C 3 HOH 1 301 37 HOH HOH AAA . C 3 HOH 2 302 113 HOH HOH AAA . C 3 HOH 3 303 97 HOH HOH AAA . C 3 HOH 4 304 69 HOH HOH AAA . C 3 HOH 5 305 86 HOH HOH AAA . C 3 HOH 6 306 54 HOH HOH AAA . C 3 HOH 7 307 71 HOH HOH AAA . C 3 HOH 8 308 57 HOH HOH AAA . C 3 HOH 9 309 32 HOH HOH AAA . C 3 HOH 10 310 75 HOH HOH AAA . C 3 HOH 11 311 83 HOH HOH AAA . C 3 HOH 12 312 68 HOH HOH AAA . C 3 HOH 13 313 93 HOH HOH AAA . C 3 HOH 14 314 42 HOH HOH AAA . C 3 HOH 15 315 119 HOH HOH AAA . C 3 HOH 16 316 25 HOH HOH AAA . C 3 HOH 17 317 46 HOH HOH AAA . C 3 HOH 18 318 27 HOH HOH AAA . C 3 HOH 19 319 64 HOH HOH AAA . C 3 HOH 20 320 15 HOH HOH AAA . C 3 HOH 21 321 62 HOH HOH AAA . C 3 HOH 22 322 49 HOH HOH AAA . C 3 HOH 23 323 88 HOH HOH AAA . C 3 HOH 24 324 117 HOH HOH AAA . C 3 HOH 25 325 12 HOH HOH AAA . C 3 HOH 26 326 14 HOH HOH AAA . C 3 HOH 27 327 30 HOH HOH AAA . C 3 HOH 28 328 43 HOH HOH AAA . C 3 HOH 29 329 3 HOH HOH AAA . C 3 HOH 30 330 47 HOH HOH AAA . C 3 HOH 31 331 10 HOH HOH AAA . C 3 HOH 32 332 13 HOH HOH AAA . C 3 HOH 33 333 20 HOH HOH AAA . C 3 HOH 34 334 21 HOH HOH AAA . C 3 HOH 35 335 34 HOH HOH AAA . C 3 HOH 36 336 92 HOH HOH AAA . C 3 HOH 37 337 106 HOH HOH AAA . C 3 HOH 38 338 6 HOH HOH AAA . C 3 HOH 39 339 19 HOH HOH AAA . C 3 HOH 40 340 16 HOH HOH AAA . C 3 HOH 41 341 102 HOH HOH AAA . C 3 HOH 42 342 35 HOH HOH AAA . C 3 HOH 43 343 44 HOH HOH AAA . C 3 HOH 44 344 38 HOH HOH AAA . C 3 HOH 45 345 2 HOH HOH AAA . C 3 HOH 46 346 48 HOH HOH AAA . C 3 HOH 47 347 24 HOH HOH AAA . C 3 HOH 48 348 109 HOH HOH AAA . C 3 HOH 49 349 23 HOH HOH AAA . C 3 HOH 50 350 99 HOH HOH AAA . C 3 HOH 51 351 28 HOH HOH AAA . C 3 HOH 52 352 1 HOH HOH AAA . C 3 HOH 53 353 107 HOH HOH AAA . C 3 HOH 54 354 73 HOH HOH AAA . C 3 HOH 55 355 91 HOH HOH AAA . C 3 HOH 56 356 8 HOH HOH AAA . C 3 HOH 57 357 95 HOH HOH AAA . C 3 HOH 58 358 82 HOH HOH AAA . C 3 HOH 59 359 29 HOH HOH AAA . C 3 HOH 60 360 55 HOH HOH AAA . C 3 HOH 61 361 41 HOH HOH AAA . C 3 HOH 62 362 112 HOH HOH AAA . C 3 HOH 63 363 18 HOH HOH AAA . C 3 HOH 64 364 89 HOH HOH AAA . C 3 HOH 65 365 9 HOH HOH AAA . C 3 HOH 66 366 31 HOH HOH AAA . C 3 HOH 67 367 22 HOH HOH AAA . C 3 HOH 68 368 98 HOH HOH AAA . C 3 HOH 69 369 59 HOH HOH AAA . C 3 HOH 70 370 52 HOH HOH AAA . C 3 HOH 71 371 17 HOH HOH AAA . C 3 HOH 72 372 56 HOH HOH AAA . C 3 HOH 73 373 50 HOH HOH AAA . C 3 HOH 74 374 60 HOH HOH AAA . C 3 HOH 75 375 118 HOH HOH AAA . C 3 HOH 76 376 36 HOH HOH AAA . C 3 HOH 77 377 101 HOH HOH AAA . C 3 HOH 78 378 11 HOH HOH AAA . C 3 HOH 79 379 72 HOH HOH AAA . C 3 HOH 80 380 85 HOH HOH AAA . C 3 HOH 81 381 4 HOH HOH AAA . C 3 HOH 82 382 26 HOH HOH AAA . C 3 HOH 83 383 7 HOH HOH AAA . C 3 HOH 84 384 45 HOH HOH AAA . C 3 HOH 85 385 53 HOH HOH AAA . C 3 HOH 86 386 51 HOH HOH AAA . C 3 HOH 87 387 40 HOH HOH AAA . C 3 HOH 88 388 63 HOH HOH AAA . C 3 HOH 89 389 61 HOH HOH AAA . C 3 HOH 90 390 87 HOH HOH AAA . C 3 HOH 91 391 39 HOH HOH AAA . C 3 HOH 92 392 67 HOH HOH AAA . C 3 HOH 93 393 111 HOH HOH AAA . C 3 HOH 94 394 110 HOH HOH AAA . C 3 HOH 95 395 108 HOH HOH AAA . C 3 HOH 96 396 90 HOH HOH AAA . C 3 HOH 97 397 65 HOH HOH AAA . C 3 HOH 98 398 70 HOH HOH AAA . C 3 HOH 99 399 81 HOH HOH AAA . C 3 HOH 100 400 58 HOH HOH AAA . C 3 HOH 101 401 66 HOH HOH AAA . C 3 HOH 102 402 78 HOH HOH AAA . C 3 HOH 103 403 84 HOH HOH AAA . C 3 HOH 104 404 76 HOH HOH AAA . C 3 HOH 105 405 103 HOH HOH AAA . C 3 HOH 106 406 74 HOH HOH AAA . C 3 HOH 107 407 94 HOH HOH AAA . C 3 HOH 108 408 96 HOH HOH AAA . C 3 HOH 109 409 104 HOH HOH AAA . C 3 HOH 110 410 79 HOH HOH AAA . C 3 HOH 111 411 115 HOH HOH AAA . C 3 HOH 112 412 105 HOH HOH AAA . C 3 HOH 113 413 114 HOH HOH AAA . C 3 HOH 114 414 116 HOH HOH AAA . C 3 HOH 115 415 80 HOH HOH AAA . C 3 HOH 116 416 100 HOH HOH AAA . C 3 HOH 117 417 33 HOH HOH AAA . C 3 HOH 118 418 77 HOH HOH AAA . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-21 2 'Structure model' 1 1 2022-10-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author 'Garib N. Murshudov' _software.contact_author_email garib@mrc-lmb.cam.ac.uk _software.date 2020-24-08 _software.description '(un)restrained refinement or idealisation of macromolecular structures' _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0267 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8E54 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 8E54 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 12.94 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Maximum likelihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8E54 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Lysozyme _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 8E54 _em_image_scans.id 1 _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 5 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 8E54 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 77 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 95 _em_vitrification.instrument 'LEICA PLUNGER' _em_vitrification.entry_id 8E54 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8E54 _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O AAA HOH 330 ? ? O AAA HOH 380 ? ? 1.81 2 1 OD1 AAA ASP 87 ? ? O AAA HOH 301 ? ? 1.92 3 1 O AAA HOH 385 ? ? O AAA HOH 414 ? ? 1.98 4 1 O AAA HOH 366 ? ? O AAA HOH 396 ? ? 2.06 5 1 O AAA HOH 380 ? ? O AAA HOH 392 ? ? 2.06 6 1 O AAA HOH 379 ? ? O AAA HOH 406 ? ? 2.09 7 1 OXT AAA LEU 129 ? ? O AAA HOH 302 ? ? 2.10 8 1 O AAA HOH 393 ? ? O AAA HOH 416 ? ? 2.11 9 1 O AAA HOH 313 ? ? O AAA HOH 404 ? ? 2.16 10 1 O AAA HOH 327 ? ? O AAA HOH 412 ? ? 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 AAA _pdbx_validate_rmsd_angle.auth_comp_id_1 TYR _pdbx_validate_rmsd_angle.auth_seq_id_1 23 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 AAA _pdbx_validate_rmsd_angle.auth_comp_id_2 TYR _pdbx_validate_rmsd_angle.auth_seq_id_2 23 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 AAA _pdbx_validate_rmsd_angle.auth_comp_id_3 TYR _pdbx_validate_rmsd_angle.auth_seq_id_3 23 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.01 _pdbx_validate_rmsd_angle.angle_target_value 121.00 _pdbx_validate_rmsd_angle.angle_deviation -3.99 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id AAA _pdbx_validate_torsion.auth_seq_id 101 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -86.22 _pdbx_validate_torsion.psi 30.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 AAA MET -17 ? A MET 1 2 1 Y 1 AAA ARG -16 ? A ARG 2 3 1 Y 1 AAA SER -15 ? A SER 3 4 1 Y 1 AAA LEU -14 ? A LEU 4 5 1 Y 1 AAA LEU -13 ? A LEU 5 6 1 Y 1 AAA ILE -12 ? A ILE 6 7 1 Y 1 AAA LEU -11 ? A LEU 7 8 1 Y 1 AAA VAL -10 ? A VAL 8 9 1 Y 1 AAA LEU -9 ? A LEU 9 10 1 Y 1 AAA CYS -8 ? A CYS 10 11 1 Y 1 AAA PHE -7 ? A PHE 11 12 1 Y 1 AAA LEU -6 ? A LEU 12 13 1 Y 1 AAA PRO -5 ? A PRO 13 14 1 Y 1 AAA LEU -4 ? A LEU 14 15 1 Y 1 AAA ALA -3 ? A ALA 15 16 1 Y 1 AAA ALA -2 ? A ALA 16 17 1 Y 1 AAA LEU -1 ? A LEU 17 18 1 Y 1 AAA GLY 0 ? A GLY 18 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 87.85 _em_3d_crystal_entity.angle_beta 108.85 _em_3d_crystal_entity.angle_gamma 112.60 _em_3d_crystal_entity.length_a 26.38 _em_3d_crystal_entity.length_b 30.76 _em_3d_crystal_entity.length_c 33 _em_3d_crystal_entity.space_group_name P-1 _em_3d_crystal_entity.space_group_num 2 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 373 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 37.64 _em_diffraction_shell.high_resolution 0.87 _em_diffraction_shell.low_resolution 0.90 _em_diffraction_shell.multiplicity 2.1 _em_diffraction_shell.num_structure_factors 2783 _em_diffraction_shell.phase_residual 30 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 87.58 _em_diffraction_stats.high_resolution 0.87 _em_diffraction_stats.num_intensities_measured 569407 _em_diffraction_stats.num_structure_factors 64974 _em_diffraction_stats.overall_phase_error 30 _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria None _em_diffraction_stats.r_merge 0.236 _em_diffraction_stats.r_sym 0.073 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.0144 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9031 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Gallus gallus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.001 _em_image_recording.average_exposure_time 0.1 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images 5600 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1 _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? AIMLESS ? 1 ? ? 12 RECONSTRUCTION ? REFMAC 5.8.0267 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0267 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 10 _em_specimen.details 'Protein crystal lamellae' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136508 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #