HEADER DNA BINDING PROTEIN 23-AUG-22 8E7B TITLE CRYSTAL STRUCTURE OF THE P53 (Y107H) CORE DOMAIN MONOCLINIC P FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: S94-T312; COMPND 5 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,L.LIU,K.P.BATTAILE,S.MILLER,J.KARANICOLAS REVDAT 3 25-OCT-23 8E7B 1 REMARK REVDAT 2 19-JUL-23 8E7B 1 JRNL REVDAT 1 17-MAY-23 8E7B 0 JRNL AUTH A.INDEGLIA,J.C.LEUNG,S.A.MILLER,J.I.LEU,J.F.DOUGHERTY, JRNL AUTH 2 N.L.CLARKE,N.A.KIRVEN,C.SHAO,L.KE,S.LOVELL,T.BARNOUD,D.Y.LU, JRNL AUTH 3 C.LIN,T.KANNAN,K.P.BATTAILE,T.H.L.YANG,I.BATISTA OLIVA, JRNL AUTH 4 D.T.CLAIBORNE,P.VOGEL,L.LIU,Q.LIU,Y.NEFEDOVA,J.CASSEL, JRNL AUTH 5 N.AUSLANDER,A.V.KOSSENKOV,J.KARANICOLAS,M.E.MURPHY JRNL TITL AN AFRICAN-SPECIFIC VARIANT OF TP53 REVEALS PADI4 AS A JRNL TITL 2 REGULATOR OF P53-MEDIATED TUMOR SUPPRESSION. JRNL REF CANCER DISCOV V. 13 1696 2023 JRNL REFN ESSN 2159-8290 JRNL PMID 37140445 JRNL DOI 10.1158/2159-8290.CD-22-1315 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1300 - 4.2700 0.99 2604 144 0.1920 0.2163 REMARK 3 2 4.2700 - 3.3900 0.97 2543 121 0.1908 0.2694 REMARK 3 3 3.3900 - 2.9600 1.00 2598 124 0.2430 0.3200 REMARK 3 4 2.9600 - 2.6900 1.00 2569 128 0.2714 0.3426 REMARK 3 5 2.6900 - 2.5000 1.00 2594 133 0.2552 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2337 0.7296 -4.2513 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1761 REMARK 3 T33: 0.1768 T12: 0.0134 REMARK 3 T13: 0.0030 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.9503 L22: 0.5833 REMARK 3 L33: -0.2026 L12: -0.2192 REMARK 3 L13: -0.0709 L23: 0.4539 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.1149 S13: -0.0028 REMARK 3 S21: -0.1171 S22: 0.0552 S23: -0.0039 REMARK 3 S31: 0.0047 S32: -0.1516 S33: 0.0109 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0933 -14.5345 -3.5169 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.1713 REMARK 3 T33: 0.3213 T12: 0.0505 REMARK 3 T13: 0.0239 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.2721 L22: 0.0779 REMARK 3 L33: 1.6367 L12: 0.4588 REMARK 3 L13: 0.5461 L23: 0.4767 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.2422 S13: -0.2459 REMARK 3 S21: 0.0431 S22: 0.0880 S23: -0.1731 REMARK 3 S31: -0.3988 S32: 0.2545 S33: 0.2573 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2886 -15.4176 -2.4469 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1330 REMARK 3 T33: 0.1839 T12: -0.0156 REMARK 3 T13: 0.0089 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.8751 L22: 0.4978 REMARK 3 L33: 0.4344 L12: -0.1314 REMARK 3 L13: 0.0076 L23: -0.6069 REMARK 3 S TENSOR REMARK 3 S11: -0.2040 S12: 0.0887 S13: -0.0376 REMARK 3 S21: -0.0577 S22: 0.0551 S23: -0.0306 REMARK 3 S31: 0.2374 S32: 0.0366 S33: -0.2868 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6038 -4.1714 4.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1842 REMARK 3 T33: 0.2638 T12: -0.0780 REMARK 3 T13: -0.0056 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 0.8581 L22: 0.9259 REMARK 3 L33: 0.6671 L12: -0.2303 REMARK 3 L13: 0.1409 L23: 0.3790 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.5503 S13: 0.1388 REMARK 3 S21: 0.1727 S22: -0.2842 S23: 0.5070 REMARK 3 S31: 0.1339 S32: -0.0087 S33: -0.2325 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4647 -6.1012 -5.1333 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.1450 REMARK 3 T33: 0.1724 T12: 0.0113 REMARK 3 T13: -0.0096 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.1805 L22: 1.0765 REMARK 3 L33: 0.9630 L12: -0.2781 REMARK 3 L13: 0.1627 L23: -0.0750 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.0608 S13: -0.2702 REMARK 3 S21: 0.1634 S22: 0.0027 S23: -0.1274 REMARK 3 S31: 0.1215 S32: 0.0483 S33: -0.0316 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5844 5.6281 -6.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.0736 REMARK 3 T33: 0.2221 T12: 0.0351 REMARK 3 T13: 0.0009 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.3429 L22: 0.6661 REMARK 3 L33: 0.7657 L12: 0.3802 REMARK 3 L13: -0.3124 L23: 0.3633 REMARK 3 S TENSOR REMARK 3 S11: 0.3323 S12: -0.4113 S13: 0.5614 REMARK 3 S21: -0.1948 S22: -0.2827 S23: 0.2738 REMARK 3 S31: -0.0463 S32: -0.0550 S33: 0.3750 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4421 -28.3620 -36.3888 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.2095 REMARK 3 T33: 0.1859 T12: -0.0529 REMARK 3 T13: -0.0157 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.4563 L22: -0.0613 REMARK 3 L33: 1.0792 L12: -0.5442 REMARK 3 L13: -0.2349 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.3429 S12: -0.2259 S13: -0.2684 REMARK 3 S21: -0.0707 S22: 0.1107 S23: 0.1374 REMARK 3 S31: 0.2483 S32: -0.3459 S33: 0.9216 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5825 -26.7983 -35.5638 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.1849 REMARK 3 T33: 0.1964 T12: -0.0129 REMARK 3 T13: 0.0069 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.1117 L22: 0.0078 REMARK 3 L33: 0.5986 L12: -0.1952 REMARK 3 L13: 0.0756 L23: 0.3373 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0430 S13: -0.0993 REMARK 3 S21: -0.0293 S22: 0.0297 S23: -0.1015 REMARK 3 S31: -0.1349 S32: 0.0031 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3664 -16.4202 -26.4484 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.3349 REMARK 3 T33: 0.2209 T12: -0.0093 REMARK 3 T13: 0.0591 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5939 L22: 0.5190 REMARK 3 L33: 0.1198 L12: -0.7371 REMARK 3 L13: 0.1405 L23: -0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.3024 S13: 0.0568 REMARK 3 S21: 0.2714 S22: 0.0015 S23: 0.1121 REMARK 3 S31: -0.4335 S32: -0.1875 S33: -0.0007 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3011 -9.1465 -22.3728 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.2483 REMARK 3 T33: 0.2920 T12: 0.0582 REMARK 3 T13: -0.0559 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: -0.0040 L22: -0.0703 REMARK 3 L33: 0.1731 L12: -0.0681 REMARK 3 L13: -0.0738 L23: 0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.2544 S12: 0.1170 S13: 0.1604 REMARK 3 S21: -0.0857 S22: 0.1992 S23: 0.1845 REMARK 3 S31: -0.2078 S32: -0.3918 S33: -0.0006 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0876 -9.9278 -33.7905 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.2695 REMARK 3 T33: 0.2506 T12: -0.0082 REMARK 3 T13: -0.0018 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.1125 L22: 0.3813 REMARK 3 L33: 0.0494 L12: 0.3021 REMARK 3 L13: -0.1336 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.0609 S13: 0.1215 REMARK 3 S21: 0.1752 S22: -0.1382 S23: 0.0361 REMARK 3 S31: -0.0147 S32: 0.1546 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1792 -19.4025 -34.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1923 REMARK 3 T33: 0.1534 T12: -0.0053 REMARK 3 T13: -0.0060 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.7198 L22: 1.1905 REMARK 3 L33: 0.5547 L12: -0.0983 REMARK 3 L13: 0.8378 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.0453 S13: 0.0268 REMARK 3 S21: -0.0278 S22: -0.1344 S23: -0.1165 REMARK 3 S31: -0.1327 S32: 0.1389 S33: -0.0200 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7852 -24.9021 -30.6593 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.2097 REMARK 3 T33: 0.2716 T12: -0.0621 REMARK 3 T13: 0.0132 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.1464 L22: 0.1497 REMARK 3 L33: 0.3184 L12: -0.0413 REMARK 3 L13: -0.2696 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.1532 S12: -0.1108 S13: -0.1878 REMARK 3 S21: 0.0055 S22: 0.0429 S23: 0.2611 REMARK 3 S31: 0.3185 S32: -0.3255 S33: -0.0189 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 278 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4544 -37.5319 -20.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.4200 T22: 0.2616 REMARK 3 T33: 0.2594 T12: -0.0222 REMARK 3 T13: 0.1318 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.1249 L22: 0.3506 REMARK 3 L33: 0.2300 L12: -0.1012 REMARK 3 L13: 0.1928 L23: 0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.2087 S13: 0.1105 REMARK 3 S21: 0.5346 S22: 0.1042 S23: 0.6818 REMARK 3 S31: 0.0529 S32: -0.2744 S33: 0.0104 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1TSR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 % (W/V) PEG 2000 MME, 100 MM BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.31800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 93 REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 SER A 96 REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 MET B 93 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 SER B 96 REMARK 465 ARG B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 139 CE NZ REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 MET A 243 CG SD CE REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 470 MET B 243 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 214 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 183 44.90 -109.60 REMARK 500 PHE A 212 -1.93 70.63 REMARK 500 CYS A 242 97.31 -47.99 REMARK 500 MET A 243 77.01 -69.06 REMARK 500 TYR B 103 107.41 -161.54 REMARK 500 ALA B 138 -6.95 83.25 REMARK 500 CYS B 182 -156.66 -73.40 REMARK 500 GLU B 224 136.31 -35.85 REMARK 500 CYS B 242 104.12 -39.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 103.5 REMARK 620 3 CYS A 238 SG 106.5 123.7 REMARK 620 4 CYS A 242 SG 110.9 118.8 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 95.8 REMARK 620 3 CYS B 238 SG 117.0 112.9 REMARK 620 4 CYS B 242 SG 111.1 98.9 117.5 REMARK 620 N 1 2 3 DBREF 8E7B A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 8E7B B 94 312 UNP P04637 P53_HUMAN 94 312 SEQADV 8E7B MET A 93 UNP P04637 INITIATING METHIONINE SEQADV 8E7B HIS A 107 UNP P04637 TYR 107 VARIANT SEQADV 8E7B MET B 93 UNP P04637 INITIATING METHIONINE SEQADV 8E7B HIS B 107 UNP P04637 TYR 107 VARIANT SEQRES 1 A 220 MET SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 A 220 SER HIS GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 A 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 A 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 A 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL SEQRES 6 A 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 A 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 A 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 A 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 A 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 A 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 A 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 A 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 A 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 A 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 A 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 A 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 220 MET SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 B 220 SER HIS GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 B 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 B 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 B 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL SEQRES 6 B 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 B 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 B 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 B 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 B 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 B 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 B 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 B 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 B 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 B 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 B 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 B 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *29(H2 O) HELIX 1 AA1 GLN A 165 MET A 169 5 5 HELIX 2 AA2 CYS A 176 ARG A 181 1 6 HELIX 3 AA3 CYS A 277 ASN A 288 1 12 HELIX 4 AA4 GLN B 165 MET B 169 5 5 HELIX 5 AA5 CYS B 176 ARG B 181 1 6 HELIX 6 AA6 CYS B 277 LEU B 289 1 13 SHEET 1 AA1 4 ARG A 110 GLY A 112 0 SHEET 2 AA1 4 CYS A 141 TRP A 146 -1 O TRP A 146 N ARG A 110 SHEET 3 AA1 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA1 4 ILE A 195 VAL A 197 -1 N ARG A 196 O ASN A 235 SHEET 1 AA2 7 CYS A 124 SER A 127 0 SHEET 2 AA2 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AA2 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AA2 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 AA2 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 AA2 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 AA2 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 AA3 4 ARG B 110 GLY B 112 0 SHEET 2 AA3 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 AA3 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 AA3 4 ILE B 195 GLU B 198 -1 N GLU B 198 O HIS B 233 SHEET 1 AA4 7 CYS B 124 SER B 127 0 SHEET 2 AA4 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 AA4 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 AA4 7 ILE B 251 GLU B 258 -1 N LEU B 257 O GLY B 266 SHEET 5 AA4 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 AA4 7 HIS B 214 PRO B 219 -1 O VAL B 218 N VAL B 157 SHEET 7 AA4 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 LINK SG CYS A 176 ZN ZN A 401 1555 1555 2.33 LINK ND1 HIS A 179 ZN ZN A 401 1555 1555 2.03 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 242 ZN ZN A 401 1555 1555 2.32 LINK SG CYS B 176 ZN ZN B 401 1555 1555 2.30 LINK ND1 HIS B 179 ZN ZN B 401 1555 1555 2.00 LINK SG CYS B 238 ZN ZN B 401 1555 1555 2.29 LINK SG CYS B 242 ZN ZN B 401 1555 1555 2.31 CRYST1 43.394 68.636 66.951 90.00 96.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023045 0.000000 0.002552 0.00000 SCALE2 0.000000 0.014570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015028 0.00000